Wall clock time and date at job start Sun Mar 29 2020 22:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31447 * 1 3 3 Si 1.86800 * 119.99414 * 2 1 4 4 H 1.48505 * 109.47038 * 239.99678 * 3 2 1 5 5 H 1.48497 * 109.47313 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47193 * 120.00214 * 3 2 1 7 7 C 1.38749 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99766 * 180.02562 * 7 2 1 9 9 O 1.34921 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.34307 * 117.00043 * 180.02562 * 9 7 2 11 11 O 1.21215 * 119.99946 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00035 * 180.02562 * 10 9 7 13 13 O 1.42902 * 109.47205 * 180.02562 * 12 10 9 14 14 C 1.42898 * 114.00186 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47171 * 180.02562 * 14 13 12 16 16 C 1.38650 * 120.78792 * 269.71759 * 15 14 13 17 17 C 1.38207 * 119.16129 * 179.79528 * 16 15 14 18 18 N 1.31868 * 120.76474 * 0.49389 * 17 16 15 19 19 C 1.31874 * 121.72157 * 359.73831 * 18 17 16 20 20 C 1.38199 * 120.77057 * 0.02562 * 19 18 17 21 21 H 0.96994 * 120.00312 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47017 * 60.00351 * 12 10 9 23 23 H 1.08999 * 109.47472 * 300.00028 * 12 10 9 24 24 H 1.09002 * 109.47259 * 300.00293 * 14 13 12 25 25 H 1.09001 * 109.47074 * 60.00315 * 14 13 12 26 26 H 1.07998 * 120.42060 * 0.02562 * 16 15 14 27 27 H 1.07997 * 119.61581 * 180.20726 * 17 16 15 28 28 H 1.07998 * 119.61429 * 180.02562 * 19 18 17 29 29 H 1.07991 * 120.42226 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1021 1.6965 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1021 1.6966 1.2124 7 6 2.0083 -1.2016 -0.0005 8 1 3.0883 -1.2015 -0.0001 9 8 1.3337 -2.3701 -0.0005 10 6 2.0652 -3.4964 -0.0005 11 8 3.2757 -3.4329 -0.0001 12 6 1.3812 -4.8392 -0.0011 13 8 2.3654 -5.8752 -0.0004 14 6 1.8193 -7.1957 -0.0003 15 6 2.9403 -8.2030 0.0011 16 6 3.4653 -8.6822 -1.1893 17 6 4.4959 -9.6021 -1.1488 18 7 4.9726 -10.0308 0.0036 19 6 4.4945 -9.6005 1.1548 20 6 3.4671 -8.6769 1.1929 21 1 -0.4850 0.8400 -0.0004 22 1 0.7588 -4.9295 -0.8914 23 1 0.7580 -4.9299 0.8886 24 1 1.2051 -7.3349 0.8894 25 1 1.2060 -7.3354 -0.8906 26 1 3.0764 -8.3381 -2.1363 27 1 4.9126 -9.9777 -2.0716 28 1 4.9106 -9.9742 2.0787 29 1 3.0796 -8.3286 2.1388 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346230588.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:10 Heat of formation + Delta-G solvation = -85.109273 kcal Electronic energy + Delta-G solvation = -15566.395822 eV Core-core repulsion = 12648.555149 eV Total energy + Delta-G solvation = -2917.840673 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.27316 -39.08316 -37.57220 -35.05781 -33.24960 -32.16956 -31.32996 -28.60415 -26.45194 -24.88589 -23.58770 -22.10376 -20.36339 -17.79067 -17.25974 -16.73371 -16.41543 -16.17163 -15.69008 -15.66040 -14.72320 -14.33789 -14.21505 -13.85936 -13.73320 -13.36781 -12.35295 -12.31722 -11.66865 -11.64953 -11.51989 -11.14931 -10.47557 -10.40942 -9.87866 -9.84981 -9.62762 -9.61992 -9.26152 -8.98419 -8.59702 -6.43396 -4.11692 1.01953 1.02582 3.12028 3.13869 3.20417 3.35272 3.48675 3.79131 4.11456 4.33760 4.49900 4.57825 4.94001 4.98615 5.00248 5.08424 5.22285 5.24831 5.47932 5.50026 5.64005 5.67210 5.83363 6.20033 6.52652 6.56183 7.20523 7.37813 7.82788 7.92808 8.69205 9.05315 9.80836 10.74530 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.059778 B = 0.004073 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.288641 B = 6873.307406 C = 7042.917693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.042 3.958 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.382 4.382 8 H 0.096 0.904 9 O -0.214 6.214 10 C 0.398 3.602 11 O -0.536 6.536 12 C 0.082 3.918 13 O -0.358 6.358 14 C 0.098 3.902 15 C -0.040 4.040 16 C -0.150 4.150 17 C 0.094 3.906 18 N -0.485 5.485 19 C 0.094 3.906 20 C -0.150 4.150 21 H 0.270 0.730 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.137 0.863 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 -15.930 0.001 15.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.162 4.162 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.458 4.458 8 H 0.114 0.886 9 O -0.121 6.121 10 C 0.243 3.757 11 O -0.432 6.432 12 C 0.004 3.996 13 O -0.277 6.277 14 C 0.021 3.979 15 C -0.048 4.048 16 C -0.170 4.170 17 C -0.063 4.063 18 N -0.195 5.195 19 C -0.063 4.063 20 C -0.170 4.170 21 H 0.080 0.920 22 H 0.099 0.901 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.174 0.826 28 H 0.174 0.826 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.229 -16.303 0.002 16.455 hybrid contribution -0.608 1.400 0.000 1.526 sum 1.621 -14.903 0.002 14.991 Atomic orbital electron populations 1.69980 1.05980 1.27854 1.46567 1.25339 0.95863 0.98821 0.96153 0.85705 0.78590 0.79242 0.79404 1.19450 1.20342 1.19446 1.21184 0.92436 0.79524 1.52656 0.88641 1.83839 1.39146 1.13071 1.76092 1.22644 0.86807 0.86726 0.79571 1.90592 1.15512 1.87768 1.49293 1.21541 0.90166 0.85005 1.02869 1.88050 1.31758 1.12356 1.95511 1.21337 0.92914 0.81916 1.01695 1.20030 0.96319 0.94979 0.93520 1.22117 0.97819 0.98178 0.98896 1.22752 0.93274 0.93962 0.96294 1.67653 1.27889 1.25291 0.98661 1.22752 0.93289 0.93933 0.96316 1.22114 0.97826 0.98169 0.98889 0.91986 0.90059 0.90067 0.91708 0.91701 0.84498 0.82605 0.82606 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.27 13.67 55.48 0.76 -24.51 15 2 C 0.04 1.19 5.49 -17.53 -0.10 1.09 15 3 Si 0.95 21.37 29.55 -169.99 -5.02 16.35 15 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 7 C -0.38 -11.39 9.64 30.92 0.30 -11.09 15 8 H 0.10 2.88 6.86 -52.49 -0.36 2.52 15 9 O -0.21 -6.13 9.75 -20.69 -0.20 -6.33 15 10 C 0.40 10.06 7.98 36.00 0.29 10.35 15 11 O -0.54 -15.28 15.74 -25.79 -0.41 -15.69 15 12 C 0.08 1.48 6.53 36.00 0.24 1.72 15 13 O -0.36 -6.38 9.86 -55.15 -0.54 -6.93 15 14 C 0.10 1.21 6.11 36.01 0.22 1.43 15 15 C -0.04 -0.50 5.55 -104.32 -0.58 -1.08 15 16 C -0.15 -1.71 9.82 -39.44 -0.39 -2.10 15 17 C 0.09 1.05 11.18 -17.55 -0.20 0.85 15 18 N -0.49 -6.09 10.36 -13.25 -0.14 -6.23 15 19 C 0.09 1.05 11.18 -17.55 -0.20 0.85 15 20 C -0.15 -1.71 9.82 -39.44 -0.39 -2.10 15 21 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 22 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 23 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 24 H 0.06 0.66 8.10 -51.93 -0.42 0.24 15 25 H 0.06 0.66 8.10 -51.93 -0.42 0.24 15 26 H 0.14 1.30 8.06 -52.49 -0.42 0.88 15 27 H 0.16 1.28 8.06 -52.49 -0.42 0.86 15 28 H 0.16 1.28 8.06 -52.49 -0.42 0.86 15 29 H 0.14 1.30 8.06 -52.49 -0.42 0.88 15 LS Contribution 273.43 15.07 4.12 4.12 Total: -1.00 -35.87 273.43 -5.11 -40.97 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -2.87 Total: -1.68 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.80 Total: -0.08 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 0.62 Total: -30.74 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -1.15 Total: -28.95 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -35.87 -5.11 -40.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346230588.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.135 kcal (2) G-P(sol) polarization free energy of solvation -35.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds