Wall clock time and date at job start Sun Mar 29 2020 22:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31447 * 1 3 3 Si 1.86800 * 119.99414 * 2 1 4 4 H 1.48505 * 109.47038 * 239.99678 * 3 2 1 5 5 H 1.48497 * 109.47313 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47193 * 120.00214 * 3 2 1 7 7 C 1.38749 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99766 * 180.02562 * 7 2 1 9 9 O 1.34921 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.34307 * 117.00043 * 180.02562 * 9 7 2 11 11 O 1.21215 * 119.99946 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00035 * 180.02562 * 10 9 7 13 13 O 1.42902 * 109.47205 * 180.02562 * 12 10 9 14 14 C 1.42898 * 114.00186 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47171 * 180.02562 * 14 13 12 16 16 C 1.38650 * 120.78792 * 269.71759 * 15 14 13 17 17 C 1.38207 * 119.16129 * 179.79528 * 16 15 14 18 18 N 1.31868 * 120.76474 * 0.49389 * 17 16 15 19 19 C 1.31874 * 121.72157 * 359.73831 * 18 17 16 20 20 C 1.38199 * 120.77057 * 0.02562 * 19 18 17 21 21 H 0.96994 * 120.00312 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47017 * 60.00351 * 12 10 9 23 23 H 1.08999 * 109.47472 * 300.00028 * 12 10 9 24 24 H 1.09002 * 109.47259 * 300.00293 * 14 13 12 25 25 H 1.09001 * 109.47074 * 60.00315 * 14 13 12 26 26 H 1.07998 * 120.42060 * 0.02562 * 16 15 14 27 27 H 1.07997 * 119.61581 * 180.20726 * 17 16 15 28 28 H 1.07998 * 119.61429 * 180.02562 * 19 18 17 29 29 H 1.07991 * 120.42226 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1021 1.6965 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1021 1.6966 1.2124 7 6 2.0083 -1.2016 -0.0005 8 1 3.0883 -1.2015 -0.0001 9 8 1.3337 -2.3701 -0.0005 10 6 2.0652 -3.4964 -0.0005 11 8 3.2757 -3.4329 -0.0001 12 6 1.3812 -4.8392 -0.0011 13 8 2.3654 -5.8752 -0.0004 14 6 1.8193 -7.1957 -0.0003 15 6 2.9403 -8.2030 0.0011 16 6 3.4653 -8.6822 -1.1893 17 6 4.4959 -9.6021 -1.1488 18 7 4.9726 -10.0308 0.0036 19 6 4.4945 -9.6005 1.1548 20 6 3.4671 -8.6769 1.1929 21 1 -0.4850 0.8400 -0.0004 22 1 0.7588 -4.9295 -0.8914 23 1 0.7580 -4.9299 0.8886 24 1 1.2051 -7.3349 0.8894 25 1 1.2060 -7.3354 -0.8906 26 1 3.0764 -8.3381 -2.1363 27 1 4.9126 -9.9777 -2.0716 28 1 4.9106 -9.9742 2.0787 29 1 3.0796 -8.3286 2.1388 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346230588.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:10 Heat of formation + Delta-G solvation = -109.653939 kcal Electronic energy + Delta-G solvation = -15567.460158 eV Core-core repulsion = 12648.555149 eV Total energy + Delta-G solvation = -2918.905009 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.21035 -40.98466 -38.92550 -37.12591 -34.34872 -34.20643 -32.15598 -30.08864 -27.75599 -26.75924 -24.42559 -22.99276 -22.26867 -19.92643 -18.81138 -17.77240 -17.65395 -17.55816 -17.06468 -16.67958 -16.42959 -16.15903 -15.80401 -14.91293 -14.72563 -14.56519 -13.95752 -13.58313 -13.57323 -13.02581 -12.80326 -12.50202 -12.36119 -12.16820 -12.05453 -11.07973 -10.81839 -10.74165 -10.71574 -10.48794 -10.09453 -8.56642 -6.37105 0.11176 0.19235 1.28707 1.33343 1.49052 1.60481 1.89163 2.32767 2.85250 2.94300 3.25241 3.58316 3.78015 3.80248 4.09572 4.14581 4.19090 4.25791 4.42876 4.44073 4.62113 4.68902 4.88262 4.97626 5.13075 5.34506 5.74352 5.79805 5.98285 6.62610 6.88255 6.98241 7.70104 8.63436 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.059778 B = 0.004073 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.288641 B = 6873.307406 C = 7042.917693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.001 4.001 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.257 1.257 6 H -0.263 1.263 7 C -0.424 4.424 8 H 0.079 0.921 9 O -0.238 6.238 10 C 0.391 3.609 11 O -0.577 6.577 12 C 0.096 3.904 13 O -0.391 6.391 14 C 0.094 3.906 15 C -0.062 4.062 16 C -0.158 4.158 17 C 0.085 3.915 18 N -0.509 5.509 19 C 0.085 3.915 20 C -0.158 4.158 21 H 0.281 0.719 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.153 0.847 27 H 0.180 0.820 28 H 0.180 0.820 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 -16.090 -0.002 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.202 4.202 3 Si 0.836 3.164 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.187 1.187 7 C -0.500 4.500 8 H 0.097 0.903 9 O -0.147 6.147 10 C 0.239 3.761 11 O -0.474 6.474 12 C 0.019 3.981 13 O -0.311 6.311 14 C 0.019 3.981 15 C -0.070 4.070 16 C -0.177 4.177 17 C -0.071 4.071 18 N -0.219 5.219 19 C -0.071 4.071 20 C -0.177 4.177 21 H 0.090 0.910 22 H 0.131 0.869 23 H 0.131 0.869 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.171 0.829 27 H 0.197 0.803 28 H 0.197 0.803 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.779 -16.499 -0.001 16.595 hybrid contribution -0.459 1.301 0.000 1.379 sum 1.320 -15.199 0.000 15.256 Atomic orbital electron populations 1.70048 1.07492 1.29602 1.46478 1.26519 0.96955 1.02172 0.94538 0.84687 0.77632 0.74314 0.79726 1.18737 1.18060 1.18727 1.21355 0.92152 0.80995 1.55454 0.90315 1.83854 1.39936 1.13867 1.77008 1.24145 0.86738 0.88311 0.76940 1.90552 1.17562 1.88518 1.50740 1.21548 0.89516 0.81252 1.05788 1.87996 1.32931 1.14270 1.95918 1.21628 0.93328 0.79104 1.04047 1.20269 0.97014 0.95491 0.94264 1.22377 0.97803 0.98110 0.99445 1.23195 0.93198 0.93802 0.96923 1.67696 1.28648 1.26077 0.99449 1.23193 0.93209 0.93770 0.96948 1.22374 0.97817 0.98113 0.99436 0.91008 0.86906 0.86917 0.89339 0.89326 0.82944 0.80258 0.80263 0.82960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.36 13.67 21.62 0.30 -52.06 15 2 C 0.00 -0.07 5.49 84.87 0.47 0.40 15 3 Si 1.02 43.31 29.55 68.60 2.03 45.34 15 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 15 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 15 7 C -0.42 -25.91 9.64 67.94 0.66 -25.25 15 8 H 0.08 4.93 6.86 -2.91 -0.02 4.91 15 9 O -0.24 -13.93 9.75 14.90 0.15 -13.79 15 10 C 0.39 20.00 7.98 71.24 0.57 20.57 15 11 O -0.58 -33.68 15.74 27.19 0.43 -33.25 15 12 C 0.10 3.31 6.53 71.24 0.47 3.78 15 13 O -0.39 -13.35 9.86 -129.94 -1.28 -14.63 15 14 C 0.09 2.09 6.11 71.24 0.44 2.53 15 15 C -0.06 -1.44 5.55 -19.67 -0.11 -1.55 15 16 C -0.16 -3.37 9.82 22.36 0.22 -3.15 15 17 C 0.09 1.80 11.18 84.68 0.95 2.75 15 18 N -0.51 -12.27 10.36 -195.85 -2.03 -14.30 15 19 C 0.09 1.80 11.18 84.68 0.95 2.75 15 20 C -0.16 -3.38 9.82 22.36 0.22 -3.16 15 21 H 0.28 14.78 8.31 -92.71 -0.77 14.01 15 22 H 0.11 3.20 8.14 -2.39 -0.02 3.18 15 23 H 0.11 3.20 8.14 -2.39 -0.02 3.18 15 24 H 0.09 1.53 8.10 -2.39 -0.02 1.51 15 25 H 0.09 1.53 8.10 -2.39 -0.02 1.51 15 26 H 0.15 2.63 8.06 -2.91 -0.02 2.61 15 27 H 0.18 2.68 8.06 -2.91 -0.02 2.66 15 28 H 0.18 2.69 8.06 -2.91 -0.02 2.66 15 29 H 0.15 2.64 8.06 -2.91 -0.02 2.62 15 Total: -1.00 -79.24 273.43 5.56 -73.68 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.16 Total: 9.35 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 4.81 Total: -0.35 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -1.73 Total: -66.36 kcal Atomic # 8 Polarization: -60.95 SS G_CDS: -0.71 Total: -61.66 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -79.24 5.56 -73.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346230588.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.975 kcal (2) G-P(sol) polarization free energy of solvation -79.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds