Wall clock time and date at job start Sun Mar 29 2020 22:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99987 * 2 1 4 4 H 1.48494 * 109.46937 * 265.21580 * 3 2 1 5 5 H 1.48500 * 109.46969 * 25.21284 * 3 2 1 6 6 H 1.48497 * 109.47359 * 145.21130 * 3 2 1 7 7 C 1.37877 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99480 * 354.09376 * 7 2 1 9 9 C 1.50693 * 120.00455 * 174.09500 * 7 2 1 10 10 H 1.09000 * 109.47260 * 55.37624 * 9 7 2 11 11 O 1.45210 * 109.46793 * 295.37879 * 9 7 2 12 12 C 1.34773 * 116.99858 * 150.00170 * 11 9 7 13 13 O 1.21543 * 120.00262 * 359.97438 * 12 11 9 14 14 C 1.47271 * 120.00034 * 180.02562 * 12 11 9 15 15 C 1.36177 * 126.46103 * 180.02562 * 14 12 11 16 16 O 1.34230 * 106.94203 * 180.29360 * 15 14 12 17 17 C 1.34061 * 108.23913 * 359.57445 * 16 15 14 18 18 N 1.29918 * 109.26141 * 0.43670 * 17 16 15 19 19 C 1.52995 * 109.47423 * 175.38182 * 9 7 2 20 20 C 1.53005 * 117.49745 * 253.99319 * 19 9 7 21 21 C 1.53001 * 117.50246 * 185.33198 * 19 9 7 22 22 H 0.96999 * 120.00012 * 0.02562 * 1 2 3 23 23 H 1.08005 * 126.52761 * 0.03125 * 15 14 12 24 24 H 1.07997 * 125.36338 * 180.16981 * 17 16 15 25 25 H 1.09008 * 115.55269 * 39.65880 * 19 9 7 26 26 H 1.08995 * 117.49663 * 359.97438 * 20 19 9 27 27 H 1.09001 * 117.49603 * 145.01794 * 20 19 9 28 28 H 1.08993 * 117.50132 * 214.97704 * 21 19 9 29 29 H 1.09003 * 117.49573 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5978 1.9880 -1.3952 5 1 1.3997 2.6798 0.5964 6 1 3.4924 1.4716 0.7988 7 6 2.0046 -1.1940 0.0005 8 1 1.4689 -2.1268 0.0972 9 6 3.5055 -1.1975 -0.1337 10 1 3.9415 -0.5714 0.6448 11 8 3.8760 -0.6768 -1.4377 12 6 5.0587 -0.0368 -1.5274 13 8 5.7610 0.0834 -0.5427 14 6 5.4996 0.5181 -2.8184 15 6 6.6625 1.1849 -3.0578 16 8 6.6613 1.5191 -4.3578 17 6 5.5281 1.0601 -4.9080 18 7 4.8212 0.4616 -3.9970 19 6 4.0272 -2.6285 0.0110 20 6 4.7340 -2.9940 1.3179 21 6 5.5439 -2.8291 0.0294 22 1 -0.4850 0.8400 -0.0004 23 1 7.4363 1.4068 -2.3377 24 1 5.2455 1.1741 -5.9440 25 1 3.4234 -3.3997 -0.4674 26 1 4.8276 -2.2149 2.0743 27 1 4.5954 -4.0057 1.6990 28 1 5.9378 -3.7323 -0.4364 29 1 6.1701 -1.9416 -0.0620 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350311368.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:46 Heat of formation + Delta-G solvation = -29.557228 kcal Electronic energy + Delta-G solvation = -16829.697851 eV Core-core repulsion = 13914.266095 eV Total energy + Delta-G solvation = -2915.431755 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.36232 -39.54512 -36.69771 -35.07102 -34.74894 -32.71309 -30.40527 -28.60049 -24.61629 -23.05128 -22.65652 -21.74189 -20.67672 -19.40762 -18.16091 -17.07343 -16.74370 -16.70654 -15.65683 -15.60135 -14.87763 -14.48902 -13.86813 -13.63341 -13.35186 -12.56822 -12.09840 -11.66293 -11.31057 -11.27831 -10.89691 -10.79732 -10.65305 -10.32968 -10.01911 -9.74648 -9.47298 -9.41645 -9.16801 -9.03160 -8.75036 -6.33279 -4.39179 1.13206 2.15460 2.66603 3.23354 3.26332 3.36381 3.43705 3.53300 4.18405 4.29443 4.54783 4.84352 5.01963 5.43649 5.50184 5.52792 5.62338 5.66366 5.82443 6.09682 6.18221 6.30266 6.48928 6.61659 6.74393 6.95116 7.34223 7.49749 7.60150 8.25179 8.61502 8.74359 9.28340 10.76072 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.010944 C = 0.008229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.139824 B = 2557.855157 C = 3401.598077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.093 3.907 3 Si 0.866 3.134 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.505 4.505 8 H 0.090 0.910 9 C 0.201 3.799 10 H 0.053 0.947 11 O -0.327 6.327 12 C 0.532 3.468 13 O -0.521 6.521 14 C -0.048 4.048 15 C 0.007 3.993 16 O -0.203 6.203 17 C 0.167 3.833 18 N -0.440 5.440 19 C -0.139 4.139 20 C -0.169 4.169 21 C -0.202 4.202 22 H 0.271 0.729 23 H 0.231 0.769 24 H 0.256 0.744 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.542 1.905 -6.710 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.115 4.115 3 Si 0.692 3.308 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.541 4.541 8 H 0.108 0.892 9 C 0.150 3.850 10 H 0.070 0.930 11 O -0.242 6.242 12 C 0.376 3.624 13 O -0.414 6.414 14 C -0.166 4.166 15 C -0.066 4.066 16 O -0.089 6.089 17 C -0.062 4.062 18 N -0.168 5.168 19 C -0.158 4.158 20 C -0.206 4.206 21 C -0.238 4.238 22 H 0.081 0.919 23 H 0.248 0.752 24 H 0.271 0.729 25 H 0.121 0.879 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.922 1.722 -6.486 13.681 hybrid contribution 0.891 1.143 0.014 1.449 sum 12.813 2.865 -6.472 14.638 Atomic orbital electron populations 1.69902 1.06401 1.27935 1.46229 1.25035 0.94722 0.99490 0.92235 0.86953 0.80846 0.83323 0.79658 1.19317 1.20981 1.18278 1.20991 0.87991 0.95441 1.49665 0.89173 1.20853 0.96054 0.88684 0.79368 0.92969 1.87224 1.31978 1.63111 1.41922 1.19749 0.81658 0.75795 0.85199 1.90753 1.55757 1.57923 1.36922 1.21316 0.94538 1.07025 0.93743 1.25290 1.00062 0.98149 0.83116 1.84415 1.40977 1.61605 1.21870 1.28266 0.80925 0.96006 1.01007 1.70948 1.29714 1.17395 0.98747 1.22624 0.92946 0.99490 1.00717 1.22807 1.04639 1.01771 0.91368 1.23168 0.95424 1.03055 1.02199 0.91896 0.75231 0.72872 0.87873 0.88999 0.89385 0.89968 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.96 55.43 0.77 -25.34 15 2 C 0.09 2.71 5.47 -17.82 -0.10 2.61 15 3 Si 0.87 22.56 25.98 -169.99 -4.42 18.14 15 4 H -0.27 -7.07 7.11 56.52 0.40 -6.67 15 5 H -0.28 -7.10 7.11 56.52 0.40 -6.70 15 6 H -0.26 -6.69 6.52 56.52 0.37 -6.32 15 7 C -0.51 -14.46 9.32 -34.44 -0.32 -14.79 15 8 H 0.09 2.70 7.99 -52.48 -0.42 2.28 15 9 C 0.20 5.12 1.52 -27.89 -0.04 5.08 15 10 H 0.05 1.39 5.58 -51.93 -0.29 1.10 15 11 O -0.33 -8.33 8.56 -40.69 -0.35 -8.68 15 12 C 0.53 12.00 6.72 34.40 0.23 12.23 15 13 O -0.52 -11.81 13.88 -19.30 -0.27 -12.08 15 14 C -0.05 -0.90 7.04 -83.04 -0.58 -1.49 15 15 C 0.01 0.10 11.95 29.99 0.36 0.46 15 16 O -0.20 -2.45 10.72 6.56 0.07 -2.38 15 17 C 0.17 2.03 13.19 51.95 0.69 2.71 15 18 N -0.44 -7.93 11.36 -11.50 -0.13 -8.06 15 19 C -0.14 -3.04 5.29 -90.62 -0.48 -3.52 15 20 C -0.17 -3.14 10.18 -26.69 -0.27 -3.41 15 21 C -0.20 -3.81 9.83 -26.69 -0.26 -4.07 15 22 H 0.27 7.59 8.31 -40.82 -0.34 7.25 15 23 H 0.23 2.37 8.06 -52.48 -0.42 1.95 15 24 H 0.26 1.58 8.06 -52.49 -0.42 1.15 15 25 H 0.10 2.22 8.14 -51.92 -0.42 1.80 15 26 H 0.09 1.72 8.08 -51.93 -0.42 1.30 15 27 H 0.09 1.41 8.14 -51.93 -0.42 0.99 15 28 H 0.08 1.36 8.14 -51.93 -0.42 0.93 15 29 H 0.10 2.05 5.57 -51.93 -0.29 1.76 15 LS Contribution 261.79 15.07 3.95 3.95 Total: -1.00 -33.95 261.79 -3.86 -37.81 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -2.70 Total: 0.82 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.78 Total: -4.18 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.64 Total: -33.40 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.55 Total: -23.14 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.42 Total: 18.14 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.95 -3.86 -37.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311368.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.253 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds