Wall clock time and date at job start Sun Mar 29 2020 22:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99987 * 2 1 4 4 H 1.48494 * 109.46937 * 265.21580 * 3 2 1 5 5 H 1.48500 * 109.46969 * 25.21284 * 3 2 1 6 6 H 1.48497 * 109.47359 * 145.21130 * 3 2 1 7 7 C 1.37877 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99480 * 354.09376 * 7 2 1 9 9 C 1.50693 * 120.00455 * 174.09500 * 7 2 1 10 10 H 1.09000 * 109.47260 * 55.37624 * 9 7 2 11 11 O 1.45210 * 109.46793 * 295.37879 * 9 7 2 12 12 C 1.34773 * 116.99858 * 150.00170 * 11 9 7 13 13 O 1.21543 * 120.00262 * 359.97438 * 12 11 9 14 14 C 1.47271 * 120.00034 * 180.02562 * 12 11 9 15 15 C 1.36177 * 126.46103 * 180.02562 * 14 12 11 16 16 O 1.34230 * 106.94203 * 180.29360 * 15 14 12 17 17 C 1.34061 * 108.23913 * 359.57445 * 16 15 14 18 18 N 1.29918 * 109.26141 * 0.43670 * 17 16 15 19 19 C 1.52995 * 109.47423 * 175.38182 * 9 7 2 20 20 C 1.53005 * 117.49745 * 253.99319 * 19 9 7 21 21 C 1.53001 * 117.50246 * 185.33198 * 19 9 7 22 22 H 0.96999 * 120.00012 * 0.02562 * 1 2 3 23 23 H 1.08005 * 126.52761 * 0.03125 * 15 14 12 24 24 H 1.07997 * 125.36338 * 180.16981 * 17 16 15 25 25 H 1.09008 * 115.55269 * 39.65880 * 19 9 7 26 26 H 1.08995 * 117.49663 * 359.97438 * 20 19 9 27 27 H 1.09001 * 117.49603 * 145.01794 * 20 19 9 28 28 H 1.08993 * 117.50132 * 214.97704 * 21 19 9 29 29 H 1.09003 * 117.49573 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5978 1.9880 -1.3952 5 1 1.3997 2.6798 0.5964 6 1 3.4924 1.4716 0.7988 7 6 2.0046 -1.1940 0.0005 8 1 1.4689 -2.1268 0.0972 9 6 3.5055 -1.1975 -0.1337 10 1 3.9415 -0.5714 0.6448 11 8 3.8760 -0.6768 -1.4377 12 6 5.0587 -0.0368 -1.5274 13 8 5.7610 0.0834 -0.5427 14 6 5.4996 0.5181 -2.8184 15 6 6.6625 1.1849 -3.0578 16 8 6.6613 1.5191 -4.3578 17 6 5.5281 1.0601 -4.9080 18 7 4.8212 0.4616 -3.9970 19 6 4.0272 -2.6285 0.0110 20 6 4.7340 -2.9940 1.3179 21 6 5.5439 -2.8291 0.0294 22 1 -0.4850 0.8400 -0.0004 23 1 7.4363 1.4068 -2.3377 24 1 5.2455 1.1741 -5.9440 25 1 3.4234 -3.3997 -0.4674 26 1 4.8276 -2.2149 2.0743 27 1 4.5954 -4.0057 1.6990 28 1 5.9378 -3.7323 -0.4364 29 1 6.1701 -1.9416 -0.0620 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350311368.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:46 Heat of formation + Delta-G solvation = -55.478022 kcal Electronic energy + Delta-G solvation = -16830.821861 eV Core-core repulsion = 13914.266095 eV Total energy + Delta-G solvation = -2916.555765 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.46113 -41.31421 -38.37181 -36.83156 -35.92445 -34.90155 -31.63377 -30.57051 -26.17620 -24.90050 -23.73646 -23.24054 -22.10205 -21.20272 -19.64000 -19.14372 -18.25640 -17.93910 -17.35029 -17.05919 -16.34364 -15.96540 -15.56474 -15.20293 -14.82774 -14.53157 -13.94619 -13.49058 -13.33187 -12.88361 -12.56355 -12.35358 -12.15726 -11.95445 -11.85077 -11.61986 -11.33595 -11.07837 -11.01272 -10.80913 -10.31656 -8.56611 -6.66229 -0.08565 0.95539 1.16069 1.17084 1.25362 1.56741 1.89283 2.01686 2.14091 2.86083 2.96498 3.25556 3.73129 3.82473 3.93785 4.04066 4.22101 4.37912 4.42311 4.58179 4.73251 4.80463 4.96350 5.09960 5.24018 5.25859 5.29374 5.70572 6.06660 6.40749 6.45869 6.88587 7.04929 8.57250 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.010944 C = 0.008229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.139824 B = 2557.855157 C = 3401.598077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.049 3.951 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.209 3.791 10 H 0.038 0.962 11 O -0.351 6.351 12 C 0.526 3.474 13 O -0.532 6.532 14 C -0.106 4.106 15 C 0.052 3.948 16 O -0.188 6.188 17 C 0.203 3.797 18 N -0.504 5.504 19 C -0.175 4.175 20 C -0.152 4.152 21 C -0.181 4.181 22 H 0.276 0.724 23 H 0.266 0.734 24 H 0.310 0.690 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.194 2.766 -7.899 17.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.155 4.155 3 Si 0.743 3.257 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.158 3.842 10 H 0.056 0.944 11 O -0.267 6.267 12 C 0.372 3.628 13 O -0.425 6.425 14 C -0.222 4.222 15 C -0.022 4.022 16 O -0.073 6.073 17 C -0.027 4.027 18 N -0.233 5.233 19 C -0.193 4.193 20 C -0.189 4.189 21 C -0.218 4.218 22 H 0.086 0.914 23 H 0.281 0.719 24 H 0.325 0.675 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.576 2.583 -7.667 16.671 hybrid contribution 0.177 0.862 0.250 0.914 sum 14.753 3.444 -7.417 16.868 Atomic orbital electron populations 1.69977 1.07520 1.28928 1.48224 1.25676 0.95371 1.02267 0.92181 0.86143 0.79874 0.80521 0.79162 1.19980 1.19032 1.18396 1.21158 0.89974 0.94436 1.50006 0.91992 1.20497 0.94020 0.90688 0.79022 0.94394 1.87079 1.34231 1.64356 1.41013 1.20213 0.80455 0.75156 0.86928 1.90720 1.55600 1.58343 1.37828 1.21032 0.97268 1.11119 0.92807 1.25809 0.98282 0.94270 0.83868 1.84501 1.40853 1.60997 1.20952 1.29375 0.79262 0.92246 1.01768 1.70854 1.32111 1.20656 0.99630 1.22491 0.95190 0.97264 1.04357 1.22953 1.02256 1.03268 0.90380 1.23182 0.92832 1.03724 1.02053 0.91411 0.71863 0.67524 0.88403 0.89414 0.86254 0.87066 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.40 13.96 21.45 0.30 -56.10 15 2 C 0.05 2.93 5.47 84.65 0.46 3.40 15 3 Si 0.92 47.59 25.98 68.60 1.78 49.37 15 4 H -0.27 -14.38 7.11 99.48 0.71 -13.67 15 5 H -0.27 -12.79 7.11 99.48 0.71 -12.09 15 6 H -0.26 -13.33 6.52 99.48 0.65 -12.68 15 7 C -0.52 -31.03 9.32 25.60 0.24 -30.79 15 8 H 0.06 3.93 7.99 -2.91 -0.02 3.91 15 9 C 0.21 10.93 1.52 29.84 0.05 10.98 15 10 H 0.04 2.07 5.58 -2.39 -0.01 2.06 15 11 O -0.35 -18.24 8.56 -56.84 -0.49 -18.73 15 12 C 0.53 23.68 6.72 70.20 0.47 24.16 15 13 O -0.53 -23.84 13.88 19.70 0.27 -23.57 15 14 C -0.11 -3.85 7.04 40.38 0.28 -3.57 15 15 C 0.05 1.27 11.95 67.34 0.80 2.07 15 16 O -0.19 -3.70 10.72 0.54 0.01 -3.70 15 17 C 0.20 4.13 13.19 130.53 1.72 5.85 15 18 N -0.50 -17.38 11.36 -305.21 -3.47 -20.84 15 19 C -0.17 -7.67 5.29 -10.79 -0.06 -7.73 15 20 C -0.15 -5.42 10.18 30.62 0.31 -5.11 15 21 C -0.18 -6.57 9.83 30.62 0.30 -6.27 15 22 H 0.28 15.86 8.31 -92.71 -0.77 15.09 15 23 H 0.27 4.30 8.06 -2.91 -0.02 4.28 15 24 H 0.31 2.15 8.06 -2.91 -0.02 2.13 15 25 H 0.10 4.33 8.14 -2.38 -0.02 4.31 15 26 H 0.09 3.21 8.08 -2.39 -0.02 3.19 15 27 H 0.12 3.50 8.14 -2.39 -0.02 3.48 15 28 H 0.11 3.36 8.14 -2.39 -0.02 3.35 15 29 H 0.09 3.54 5.57 -2.39 -0.01 3.52 15 Total: -1.00 -77.82 261.79 4.11 -73.71 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 1.12 Total: 6.88 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 4.59 Total: -7.02 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -3.17 Total: -76.94 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.21 Total: -46.00 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.78 Total: 49.37 kcal Total: -77.82 4.11 -73.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311368.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.229 kcal (2) G-P(sol) polarization free energy of solvation -77.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds