Wall clock time and date at job start Sun Mar 29 2020 22:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 119.99868 * 2 1 4 4 H 1.48507 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47482 * 299.99577 * 3 2 1 6 6 H 1.48496 * 109.47247 * 59.99899 * 3 2 1 7 7 C 1.38650 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00523 * 180.02562 * 7 2 1 9 9 O 1.34836 * 119.99834 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00433 * 174.59573 * 9 7 2 11 11 C 1.38949 * 120.03986 * 173.82555 * 10 9 7 12 12 C 1.38120 * 120.07575 * 179.76537 * 11 10 9 13 13 C 1.38205 * 120.13421 * 0.50985 * 12 11 10 14 14 C 1.38919 * 120.06858 * 359.74091 * 13 12 11 15 15 N 1.39926 * 120.03549 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00127 * 326.32868 * 15 14 13 17 17 O 1.21291 * 120.00095 * 354.78367 * 16 15 14 18 18 C 1.50700 * 119.99992 * 174.78394 * 16 15 14 19 19 O 1.42907 * 109.46829 * 179.97438 * 18 16 15 20 20 C 1.38741 * 120.03111 * 354.09682 * 10 9 7 21 21 H 0.97002 * 119.99575 * 0.02562 * 1 2 3 22 22 H 1.08003 * 119.95984 * 0.02562 * 11 10 9 23 23 H 1.08004 * 119.93529 * 180.25104 * 12 11 10 24 24 H 1.08003 * 119.96195 * 179.76678 * 13 12 11 25 25 H 0.97000 * 120.00118 * 146.32143 * 15 14 13 26 26 H 1.09000 * 109.47134 * 299.99577 * 18 16 15 27 27 H 1.08997 * 109.47425 * 59.99920 * 18 16 15 28 28 H 0.96695 * 113.99776 * 180.02562 * 19 18 16 29 29 H 1.07998 * 120.06807 * 359.95909 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8908 2.3965 1.2124 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0694 -3.5043 -0.1128 11 6 1.4555 -4.7448 0.0088 12 6 2.2014 -5.9010 -0.1113 13 6 3.5621 -5.8280 -0.3421 14 6 4.1828 -4.5908 -0.4595 15 7 5.5604 -4.5177 -0.6938 16 6 6.3836 -5.4462 -0.1679 17 8 5.9442 -6.2895 0.5850 18 6 7.8500 -5.4365 -0.5153 19 8 8.5069 -6.5099 0.1618 20 6 3.4352 -3.4276 -0.3447 21 1 -0.4849 0.8401 -0.0004 22 1 0.3930 -4.8050 0.1932 23 1 1.7212 -6.8641 -0.0204 24 1 4.1434 -6.7339 -0.4318 25 1 5.9229 -3.7988 -1.2348 26 1 7.9691 -5.5585 -1.5918 27 1 8.2904 -4.4887 -0.2060 28 1 9.4559 -6.5646 -0.0154 29 1 3.9153 -2.4645 -0.4359 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354080398.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:00 Heat of formation + Delta-G solvation = -79.073063 kcal Electronic energy + Delta-G solvation = -16011.547060 eV Core-core repulsion = 13093.968137 eV Total energy + Delta-G solvation = -2917.578923 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.20253 -38.70267 -36.92231 -36.10370 -34.25599 -32.26224 -29.85210 -28.88339 -27.32811 -25.29941 -22.16098 -21.82513 -20.08725 -18.20432 -17.84208 -17.70762 -16.46316 -15.91487 -15.49298 -15.03079 -14.58005 -14.34572 -13.96281 -13.66040 -13.42655 -12.99114 -12.55306 -12.36073 -11.75872 -11.60278 -11.13192 -11.05665 -10.74743 -10.48553 -10.44855 -9.92737 -9.57331 -9.43671 -8.82639 -7.76015 -7.17864 -6.46967 -4.06734 1.92977 2.35309 2.78158 2.95110 3.10144 3.10889 3.16202 3.93809 4.32278 4.55128 4.66774 4.85399 4.96066 5.09039 5.25864 5.69499 5.97388 6.04612 6.21603 6.25971 6.61049 6.92854 6.96362 7.09742 7.26841 7.29439 7.40218 7.66338 7.78693 7.97350 8.27615 8.98488 9.68983 10.71179 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.029092 B = 0.006086 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.238913 B = 4599.480901 C = 5475.377755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.176 6.176 10 C 0.168 3.832 11 C -0.199 4.199 12 C -0.063 4.063 13 C -0.206 4.206 14 C 0.181 3.819 15 N -0.669 5.669 16 C 0.505 3.495 17 O -0.500 6.500 18 C 0.062 3.938 19 O -0.548 6.548 20 C -0.256 4.256 21 H 0.270 0.730 22 H 0.119 0.881 23 H 0.117 0.883 24 H 0.118 0.882 25 H 0.407 0.593 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.385 0.615 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.834 -5.619 -3.936 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.079 6.079 10 C 0.114 3.886 11 C -0.219 4.219 12 C -0.081 4.081 13 C -0.227 4.227 14 C 0.088 3.912 15 N -0.316 5.316 16 C 0.291 3.709 17 O -0.372 6.372 18 C -0.020 4.020 19 O -0.352 6.352 20 C -0.278 4.278 21 H 0.080 0.920 22 H 0.137 0.863 23 H 0.135 0.865 24 H 0.136 0.864 25 H 0.242 0.758 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.232 0.768 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.544 -6.154 -3.139 14.321 hybrid contribution 1.319 1.446 -0.558 2.035 sum 13.863 -4.708 -3.697 15.101 Atomic orbital electron populations 1.70048 1.05936 1.27554 1.46124 1.25283 0.95840 0.98802 0.96585 0.85653 0.79022 0.80463 0.78274 1.19214 1.20153 1.20136 1.21321 0.91692 0.80877 1.52951 0.89204 1.84020 1.33916 1.11372 1.78636 1.19082 0.89499 0.88124 0.91903 1.20264 1.00188 0.89987 1.11423 1.20538 0.93056 0.97009 0.97542 1.20555 0.94707 0.95854 1.11590 1.17374 0.80920 0.94004 0.98927 1.43365 1.05964 1.29660 1.52574 1.20402 0.87938 0.81840 0.80749 1.90754 1.76877 1.36484 1.33125 1.21821 0.91036 0.91798 0.97305 1.86598 1.25767 1.50868 1.71986 1.20813 0.94811 0.97172 1.14961 0.92049 0.86299 0.86519 0.86378 0.75807 0.90301 0.90384 0.76790 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.08 13.67 55.48 0.76 -24.32 15 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 15 3 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 15 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 15 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 7 C -0.39 -10.82 9.44 30.88 0.29 -10.53 15 8 H 0.09 2.28 5.30 -52.49 -0.28 2.01 15 9 O -0.18 -5.00 9.76 0.05 0.00 -5.00 15 10 C 0.17 4.09 6.64 -39.13 -0.26 3.83 15 11 C -0.20 -4.31 9.99 -39.36 -0.39 -4.70 15 12 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 15 13 C -0.21 -4.07 8.65 -39.34 -0.34 -4.41 15 14 C 0.18 3.49 6.27 -83.72 -0.52 2.97 15 15 N -0.67 -9.96 5.34 -9.88 -0.05 -10.01 15 16 C 0.50 7.67 7.64 -10.99 -0.08 7.58 15 17 O -0.50 -10.05 14.21 -14.36 -0.20 -10.25 15 18 C 0.06 0.59 7.53 36.01 0.27 0.86 15 19 O -0.55 -5.97 13.19 -55.14 -0.73 -6.70 15 20 C -0.26 -5.54 9.05 -39.21 -0.35 -5.90 15 21 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 22 H 0.12 2.45 8.06 -52.48 -0.42 2.03 15 23 H 0.12 1.87 8.06 -52.48 -0.42 1.45 15 24 H 0.12 2.30 6.43 -52.48 -0.34 1.96 15 25 H 0.41 4.46 8.82 -40.82 -0.36 4.10 15 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 15 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 15 28 H 0.38 1.77 9.12 45.56 0.42 2.19 15 29 H 0.13 2.73 5.71 -52.49 -0.30 2.44 15 LS Contribution 263.87 15.07 3.98 3.98 Total: -1.00 -35.92 263.87 -4.85 -40.76 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -1.69 Total: 7.34 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -1.89 Total: -10.93 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.71 Total: -34.33 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.93 Total: -21.95 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -35.92 -4.85 -40.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354080398.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.311 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds