Wall clock time and date at job start Sun Mar 29 2020 22:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 119.99868 * 2 1 4 4 H 1.48507 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47482 * 299.99577 * 3 2 1 6 6 H 1.48496 * 109.47247 * 59.99899 * 3 2 1 7 7 C 1.38650 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00523 * 180.02562 * 7 2 1 9 9 O 1.34836 * 119.99834 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00433 * 174.59573 * 9 7 2 11 11 C 1.38949 * 120.03986 * 173.82555 * 10 9 7 12 12 C 1.38120 * 120.07575 * 179.76537 * 11 10 9 13 13 C 1.38205 * 120.13421 * 0.50985 * 12 11 10 14 14 C 1.38919 * 120.06858 * 359.74091 * 13 12 11 15 15 N 1.39926 * 120.03549 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00127 * 326.32868 * 15 14 13 17 17 O 1.21291 * 120.00095 * 354.78367 * 16 15 14 18 18 C 1.50700 * 119.99992 * 174.78394 * 16 15 14 19 19 O 1.42907 * 109.46829 * 179.97438 * 18 16 15 20 20 C 1.38741 * 120.03111 * 354.09682 * 10 9 7 21 21 H 0.97002 * 119.99575 * 0.02562 * 1 2 3 22 22 H 1.08003 * 119.95984 * 0.02562 * 11 10 9 23 23 H 1.08004 * 119.93529 * 180.25104 * 12 11 10 24 24 H 1.08003 * 119.96195 * 179.76678 * 13 12 11 25 25 H 0.97000 * 120.00118 * 146.32143 * 15 14 13 26 26 H 1.09000 * 109.47134 * 299.99577 * 18 16 15 27 27 H 1.08997 * 109.47425 * 59.99920 * 18 16 15 28 28 H 0.96695 * 113.99776 * 180.02562 * 19 18 16 29 29 H 1.07998 * 120.06807 * 359.95909 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8908 2.3965 1.2124 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0694 -3.5043 -0.1128 11 6 1.4555 -4.7448 0.0088 12 6 2.2014 -5.9010 -0.1113 13 6 3.5621 -5.8280 -0.3421 14 6 4.1828 -4.5908 -0.4595 15 7 5.5604 -4.5177 -0.6938 16 6 6.3836 -5.4462 -0.1679 17 8 5.9442 -6.2895 0.5850 18 6 7.8500 -5.4365 -0.5153 19 8 8.5069 -6.5099 0.1618 20 6 3.4352 -3.4276 -0.3447 21 1 -0.4849 0.8401 -0.0004 22 1 0.3930 -4.8050 0.1932 23 1 1.7212 -6.8641 -0.0204 24 1 4.1434 -6.7339 -0.4318 25 1 5.9229 -3.7988 -1.2348 26 1 7.9691 -5.5585 -1.5918 27 1 8.2904 -4.4887 -0.2060 28 1 9.4559 -6.5646 -0.0154 29 1 3.9153 -2.4645 -0.4359 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354080398.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:59 Heat of formation + Delta-G solvation = -107.830881 kcal Electronic energy + Delta-G solvation = -16012.794092 eV Core-core repulsion = 13093.968137 eV Total energy + Delta-G solvation = -2918.825956 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.57677 -40.36191 -38.30170 -37.24112 -35.69233 -34.24076 -31.31272 -30.53621 -28.47633 -27.24024 -23.62210 -23.48790 -21.50963 -19.83110 -19.39202 -18.75611 -17.81768 -17.04444 -16.93588 -16.64883 -16.07054 -15.94174 -15.56022 -15.32117 -14.72093 -14.55814 -14.11891 -13.56234 -13.42234 -13.25900 -12.75674 -12.71131 -12.40370 -12.07480 -11.51556 -11.27657 -11.13861 -10.88869 -10.70473 -9.38479 -8.90629 -8.46723 -6.15802 0.36309 0.66511 1.36880 1.44554 1.55270 1.55706 1.85033 2.18217 2.82317 3.15670 3.46648 3.56160 3.76753 4.11135 4.27368 4.30802 4.37532 4.42517 4.61370 4.72179 4.99820 5.10652 5.35827 5.44871 5.64000 5.64918 6.01132 6.14136 6.41588 6.89738 6.97559 7.10398 7.76734 8.76531 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.029092 B = 0.006086 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.238913 B = 4599.480901 C = 5475.377755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.020 2.980 4 H -0.247 1.247 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.226 6.226 10 C 0.135 3.865 11 C -0.213 4.213 12 C -0.052 4.052 13 C -0.204 4.204 14 C 0.186 3.814 15 N -0.658 5.658 16 C 0.498 3.502 17 O -0.556 6.556 18 C 0.072 3.928 19 O -0.581 6.581 20 C -0.259 4.259 21 H 0.273 0.727 22 H 0.120 0.880 23 H 0.153 0.847 24 H 0.126 0.874 25 H 0.427 0.573 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.411 0.589 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.957 -5.796 -4.689 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.170 1.170 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.132 6.132 10 C 0.083 3.917 11 C -0.233 4.233 12 C -0.071 4.071 13 C -0.225 4.225 14 C 0.092 3.908 15 N -0.306 5.306 16 C 0.287 3.713 17 O -0.432 6.432 18 C -0.009 4.009 19 O -0.391 6.391 20 C -0.280 4.280 21 H 0.082 0.918 22 H 0.138 0.862 23 H 0.171 0.829 24 H 0.144 0.856 25 H 0.266 0.734 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.263 0.737 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.752 -6.357 -3.928 17.435 hybrid contribution 0.471 1.211 -0.334 1.342 sum 16.223 -5.146 -4.262 17.545 Atomic orbital electron populations 1.70196 1.08117 1.28801 1.48673 1.26617 0.96839 1.02804 0.95755 0.84507 0.78413 0.74693 0.78437 1.17047 1.19295 1.19739 1.21860 0.92553 0.81296 1.53246 0.87882 1.83988 1.35576 1.12514 1.81116 1.19605 0.90863 0.87981 0.93226 1.20486 1.00720 0.90067 1.12046 1.20916 0.92948 0.97664 0.95530 1.20858 0.94992 0.96327 1.10298 1.17432 0.83152 0.93020 0.97232 1.43355 1.04115 1.30617 1.52532 1.21625 0.90275 0.80239 0.79182 1.90727 1.78273 1.38567 1.35631 1.21907 0.86512 0.93103 0.99333 1.86522 1.28214 1.51573 1.72768 1.20859 0.94048 0.98199 1.14922 0.91813 0.86171 0.82903 0.85601 0.73360 0.86323 0.86797 0.73701 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.74 13.67 21.61 0.30 -55.45 15 2 C -0.02 -1.25 5.49 84.83 0.47 -0.79 15 3 Si 1.02 41.48 29.55 68.60 2.03 43.50 15 4 H -0.25 -9.07 7.11 99.48 0.71 -8.36 15 5 H -0.27 -10.42 7.11 99.48 0.71 -9.72 15 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 7 C -0.41 -23.51 9.44 67.92 0.64 -22.87 15 8 H 0.10 5.30 5.30 -2.91 -0.02 5.29 15 9 O -0.23 -13.43 9.76 -22.75 -0.22 -13.66 15 10 C 0.13 6.73 6.64 22.56 0.15 6.88 15 11 C -0.21 -9.37 9.99 22.41 0.22 -9.15 15 12 C -0.05 -1.94 10.03 22.23 0.22 -1.71 15 13 C -0.20 -7.72 8.65 22.43 0.19 -7.52 15 14 C 0.19 6.93 6.27 38.13 0.24 7.17 15 15 N -0.66 -17.80 5.34 -303.56 -1.62 -19.42 15 16 C 0.50 13.71 7.64 87.66 0.67 14.38 15 17 O -0.56 -21.45 14.21 15.97 0.23 -21.23 15 18 C 0.07 1.04 7.53 71.24 0.54 1.58 15 19 O -0.58 -10.70 13.19 -129.94 -1.71 -12.41 15 20 C -0.26 -11.18 9.05 22.51 0.20 -10.98 15 21 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 22 H 0.12 5.12 8.06 -2.91 -0.02 5.09 15 23 H 0.15 4.50 8.06 -2.91 -0.02 4.48 15 24 H 0.13 4.65 6.43 -2.91 -0.02 4.64 15 25 H 0.43 7.91 8.82 -92.71 -0.82 7.09 15 26 H 0.12 0.85 8.14 -2.39 -0.02 0.83 15 27 H 0.11 0.91 8.14 -2.39 -0.02 0.89 15 28 H 0.41 2.24 9.12 -74.06 -0.68 1.57 15 29 H 0.13 5.55 5.71 -2.91 -0.02 5.53 15 Total: -1.00 -82.36 263.87 2.26 -80.10 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.28 Total: 21.58 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 3.55 Total: -23.02 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -1.33 Total: -74.87 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -1.71 Total: -47.29 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -82.36 2.26 -80.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354080398.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.728 kcal (2) G-P(sol) polarization free energy of solvation -82.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds