Wall clock time and date at job start Sun Mar 29 2020 22:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39985 * 120.23289 * 298.63019 * 3 2 1 5 5 F 1.35103 * 120.06525 * 0.04695 * 4 3 2 6 6 C 1.38103 * 119.86348 * 180.02562 * 4 3 2 7 7 C 1.38497 * 120.32787 * 359.95906 * 6 4 3 8 8 C 1.38025 * 120.47718 * 0.02562 * 7 6 4 9 9 C 1.38925 * 120.13200 * 359.97438 * 8 7 6 10 10 S 1.76196 * 120.16824 * 179.72256 * 9 8 7 11 11 C 1.81399 * 103.00006 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.47043 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00251 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00316 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00305 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99651 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.47278 * 89.99971 * 16 14 12 18 18 H 1.48498 * 109.47108 * 210.00154 * 16 14 12 19 19 H 1.48507 * 109.47141 * 330.00110 * 16 14 12 20 20 H 1.07996 * 119.83494 * 179.97438 * 6 4 3 21 21 H 1.08004 * 119.76171 * 180.02562 * 7 6 4 22 22 H 1.08000 * 119.93681 * 179.97438 * 8 7 6 23 23 H 1.08996 * 109.47377 * 299.99683 * 11 10 9 24 24 H 1.09003 * 109.47037 * 59.99698 * 11 10 9 25 25 H 0.96999 * 119.99749 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2731 -0.5786 1.0616 5 9 2.6039 -1.1420 2.0912 6 6 4.6541 -0.5732 1.0540 7 6 5.3454 0.0018 0.0007 8 6 4.6641 0.5764 -1.0533 9 6 3.2750 0.5819 -1.0656 10 16 2.4043 1.3217 -2.4069 11 6 3.7393 1.9156 -3.4819 12 6 3.1470 2.5844 -4.6956 13 1 2.0747 2.6463 -4.8087 14 6 3.9740 3.1172 -5.6617 15 7 3.4571 3.7012 -6.7206 16 14 5.8286 3.0094 -5.4664 17 1 6.3201 1.7549 -6.0908 18 1 6.4648 4.1752 -6.1306 19 1 6.1753 3.0124 -4.0224 20 1 5.1976 -1.0198 1.8734 21 1 6.4255 0.0005 0.0039 22 1 5.2121 1.0227 -1.8700 23 1 4.3541 2.6312 -2.9362 24 1 4.3550 1.0728 -3.7961 25 1 4.0390 4.0757 -7.4003 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001472802087.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:07 Heat of formation + Delta-G solvation = 3.169691 kcal Electronic energy + Delta-G solvation = -13319.111468 eV Core-core repulsion = 10724.391424 eV Total energy + Delta-G solvation = -2594.720044 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.032 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.11778 -39.03511 -36.28599 -33.29920 -31.52434 -30.98184 -29.46872 -24.39356 -23.02755 -22.63598 -19.25803 -17.82593 -17.16232 -16.63157 -15.87397 -15.65712 -15.15558 -14.37136 -13.79761 -13.79270 -13.70201 -13.16713 -13.12578 -12.84721 -12.50719 -12.20042 -11.89930 -11.67475 -11.00051 -10.72784 -10.41870 -9.92146 -9.74431 -9.42016 -8.95572 -8.87960 -7.13670 -6.36007 -4.42101 0.57391 0.97854 1.85230 2.74370 2.91006 3.06483 3.11374 3.13392 3.21590 3.68707 3.84122 4.07140 4.13759 4.67288 4.94096 4.97257 5.10301 5.27104 5.67979 5.85627 5.94534 6.15919 6.23483 6.35029 6.58339 7.15638 7.59233 8.07661 8.63475 9.16977 10.75498 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.035950 B = 0.006894 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.674978 B = 4060.432176 C = 4823.956770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C 0.258 3.742 3 C -0.066 4.066 4 C 0.163 3.837 5 F -0.130 7.130 6 C -0.179 4.179 7 C -0.040 4.040 8 C -0.152 4.152 9 C -0.012 4.012 10 S -0.075 6.075 11 C 0.019 3.981 12 C -0.527 4.527 13 H 0.086 0.914 14 C 0.085 3.915 15 N -0.883 5.883 16 Si 0.878 3.122 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.264 1.264 20 H 0.143 0.857 21 H 0.140 0.860 22 H 0.143 0.857 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.372 -7.306 13.297 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.057 4.057 3 C -0.078 4.078 4 C 0.140 3.860 5 F -0.109 7.109 6 C -0.202 4.202 7 C -0.061 4.061 8 C -0.177 4.177 9 C -0.130 4.130 10 S 0.178 5.822 11 C -0.129 4.129 12 C -0.565 4.565 13 H 0.104 0.896 14 C -0.121 4.121 15 N -0.520 5.520 16 Si 0.704 3.296 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.188 1.188 20 H 0.161 0.839 21 H 0.158 0.842 22 H 0.161 0.839 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.355 -7.019 12.779 15.216 hybrid contribution 2.659 -0.185 0.310 2.683 sum 7.013 -7.204 13.088 16.504 Atomic orbital electron populations 1.81164 1.11593 1.08123 1.06972 1.25099 0.92163 0.94196 0.94259 1.15430 0.84983 1.10074 0.97361 1.17455 0.90023 0.94650 0.83898 1.91528 1.80853 1.82240 1.56241 1.20924 0.91213 1.06112 1.01933 1.21095 1.00454 0.93030 0.91510 1.21359 0.92131 1.03277 1.00916 1.22359 0.96715 0.96611 0.97304 1.86067 1.16583 1.64648 1.14858 1.21920 0.94100 0.99414 0.97422 1.20338 0.95958 1.38402 1.01844 0.89629 1.24831 0.98937 0.93929 0.94404 1.69847 1.36024 1.36510 1.09570 0.86816 0.85188 0.78592 0.79037 1.19585 1.20545 1.18843 0.83938 0.84217 0.83932 0.93244 0.93707 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.53 18.54 41.84 0.78 -6.75 15 2 C 0.26 4.44 13.93 -22.48 -0.31 4.13 15 3 C -0.07 -1.00 5.77 -106.48 -0.61 -1.61 15 4 C 0.16 2.06 7.28 -38.98 -0.28 1.78 15 5 F -0.13 -1.69 16.81 2.25 0.04 -1.65 15 6 C -0.18 -1.77 10.00 -39.54 -0.40 -2.16 15 7 C -0.04 -0.39 10.02 -39.56 -0.40 -0.79 15 8 C -0.15 -2.01 9.36 -39.41 -0.37 -2.38 15 9 C -0.01 -0.19 6.16 -38.49 -0.24 -0.43 15 10 S -0.07 -1.47 20.83 -107.50 -2.24 -3.71 15 11 C 0.02 0.41 3.16 36.00 0.11 0.52 15 12 C -0.53 -13.91 9.68 -34.44 -0.33 -14.25 15 13 H 0.09 2.51 7.96 -52.48 -0.42 2.10 15 14 C 0.09 2.27 5.47 -17.82 -0.10 2.17 15 15 N -0.88 -25.32 13.96 55.43 0.77 -24.55 15 16 Si 0.88 19.12 27.47 -169.99 -4.67 14.45 15 17 H -0.27 -5.77 7.11 56.52 0.40 -5.36 15 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 19 H -0.26 -5.28 6.54 56.52 0.37 -4.91 15 20 H 0.14 0.99 8.06 -52.49 -0.42 0.57 15 21 H 0.14 0.93 8.06 -52.48 -0.42 0.51 15 22 H 0.14 1.91 5.89 -52.49 -0.31 1.60 15 23 H 0.05 1.01 6.82 -51.93 -0.35 0.66 15 24 H 0.04 0.90 7.17 -51.92 -0.37 0.53 15 25 H 0.27 7.19 8.31 -40.82 -0.34 6.86 15 LS Contribution 251.44 15.07 3.79 3.79 Total: -1.00 -28.70 251.44 -5.92 -34.62 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: -1.46 Total: -3.18 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -2.93 Total: -13.02 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 1.55 Total: -31.30 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.67 Total: 14.45 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.24 Total: -3.71 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.70 -5.92 -34.62 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472802087.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.790 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds