Wall clock time and date at job start Sun Mar 29 2020 22:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39985 * 120.23289 * 298.63019 * 3 2 1 5 5 F 1.35103 * 120.06525 * 0.04695 * 4 3 2 6 6 C 1.38103 * 119.86348 * 180.02562 * 4 3 2 7 7 C 1.38497 * 120.32787 * 359.95906 * 6 4 3 8 8 C 1.38025 * 120.47718 * 0.02562 * 7 6 4 9 9 C 1.38925 * 120.13200 * 359.97438 * 8 7 6 10 10 S 1.76196 * 120.16824 * 179.72256 * 9 8 7 11 11 C 1.81399 * 103.00006 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.47043 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00251 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00316 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00305 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99651 * 0.02562 * 14 12 11 17 17 H 1.48505 * 109.47278 * 89.99971 * 16 14 12 18 18 H 1.48498 * 109.47108 * 210.00154 * 16 14 12 19 19 H 1.48507 * 109.47141 * 330.00110 * 16 14 12 20 20 H 1.07996 * 119.83494 * 179.97438 * 6 4 3 21 21 H 1.08004 * 119.76171 * 180.02562 * 7 6 4 22 22 H 1.08000 * 119.93681 * 179.97438 * 8 7 6 23 23 H 1.08996 * 109.47377 * 299.99683 * 11 10 9 24 24 H 1.09003 * 109.47037 * 59.99698 * 11 10 9 25 25 H 0.96999 * 119.99749 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2731 -0.5786 1.0616 5 9 2.6039 -1.1420 2.0912 6 6 4.6541 -0.5732 1.0540 7 6 5.3454 0.0018 0.0007 8 6 4.6641 0.5764 -1.0533 9 6 3.2750 0.5819 -1.0656 10 16 2.4043 1.3217 -2.4069 11 6 3.7393 1.9156 -3.4819 12 6 3.1470 2.5844 -4.6956 13 1 2.0747 2.6463 -4.8087 14 6 3.9740 3.1172 -5.6617 15 7 3.4571 3.7012 -6.7206 16 14 5.8286 3.0094 -5.4664 17 1 6.3201 1.7549 -6.0908 18 1 6.4648 4.1752 -6.1306 19 1 6.1753 3.0124 -4.0224 20 1 5.1976 -1.0198 1.8734 21 1 6.4255 0.0005 0.0039 22 1 5.2121 1.0227 -1.8700 23 1 4.3541 2.6312 -2.9362 24 1 4.3550 1.0728 -3.7961 25 1 4.0390 4.0757 -7.4003 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001472802087.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:07 Heat of formation + Delta-G solvation = -13.691224 kcal Electronic energy + Delta-G solvation = -13319.842612 eV Core-core repulsion = 10724.391424 eV Total energy + Delta-G solvation = -2595.451188 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.11465 -40.07513 -37.62228 -35.26730 -32.56419 -32.21873 -31.14300 -25.59629 -24.47816 -23.94972 -20.45230 -19.13120 -18.80891 -17.78210 -16.96603 -16.88878 -16.22099 -16.09259 -15.27904 -15.12645 -14.75505 -14.71066 -14.51681 -14.30176 -13.91410 -13.35117 -13.04544 -12.87563 -12.63247 -12.25739 -12.08570 -11.74233 -11.03403 -10.92079 -10.75167 -9.96799 -8.57682 -8.38077 -6.51723 -0.47987 0.00238 0.47366 1.37938 1.39910 1.43218 1.51863 1.67222 1.77817 2.31726 2.56973 2.69156 2.95621 3.03921 3.81539 3.96961 4.21550 4.33046 4.51517 4.67247 4.72978 4.93216 5.06562 5.22162 5.30979 5.69934 6.01571 6.27115 6.53013 7.12033 8.77696 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.035950 B = 0.006894 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.674978 B = 4060.432176 C = 4823.956770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.267 3.733 3 C -0.084 4.084 4 C 0.160 3.840 5 F -0.133 7.133 6 C -0.148 4.148 7 C -0.015 4.015 8 C -0.154 4.154 9 C -0.020 4.020 10 S -0.146 6.146 11 C 0.035 3.965 12 C -0.541 4.541 13 H 0.031 0.969 14 C 0.020 3.980 15 N -0.940 5.940 16 Si 0.955 3.045 17 H -0.258 1.258 18 H -0.283 1.283 19 H -0.226 1.226 20 H 0.187 0.813 21 H 0.191 0.809 22 H 0.146 0.854 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.849 -8.719 15.918 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.048 4.048 3 C -0.095 4.095 4 C 0.136 3.864 5 F -0.111 7.111 6 C -0.170 4.170 7 C -0.035 4.035 8 C -0.178 4.178 9 C -0.137 4.137 10 S 0.103 5.897 11 C -0.113 4.113 12 C -0.580 4.580 13 H 0.050 0.950 14 C -0.181 4.181 15 N -0.579 5.579 16 Si 0.775 3.225 17 H -0.183 1.183 18 H -0.208 1.208 19 H -0.149 1.149 20 H 0.204 0.796 21 H 0.208 0.792 22 H 0.164 0.836 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.829 -8.459 15.452 19.704 hybrid contribution 1.246 0.175 -0.368 1.311 sum 10.075 -8.284 15.084 19.941 Atomic orbital electron populations 1.81147 1.12887 1.09773 1.08384 1.25654 0.92908 0.93079 0.93119 1.15598 0.83775 1.11572 0.98595 1.17655 0.91089 0.94548 0.83069 1.91532 1.81248 1.82218 1.56127 1.21478 0.89604 1.03388 1.02523 1.21628 1.02685 0.89939 0.89271 1.21581 0.90669 1.03358 1.02241 1.22037 0.97594 0.98266 0.95795 1.86223 1.18124 1.67311 1.18009 1.21640 0.94223 0.99766 0.95635 1.20570 0.93895 1.39106 1.04418 0.95034 1.25984 1.05511 0.93015 0.93543 1.70029 1.38525 1.38273 1.11046 0.85610 0.76912 0.78762 0.81204 1.18267 1.20836 1.14874 0.79560 0.79228 0.83633 0.91643 0.91838 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -17.33 18.54 19.00 0.35 -16.98 15 2 C 0.27 9.36 13.93 88.33 1.23 10.59 15 3 C -0.08 -2.42 5.77 -21.07 -0.12 -2.54 15 4 C 0.16 3.46 7.28 22.66 0.16 3.62 15 5 F -0.13 -3.06 16.81 44.97 0.76 -2.31 15 6 C -0.15 -1.96 10.00 22.30 0.22 -1.74 15 7 C -0.01 -0.19 10.02 22.28 0.22 0.03 15 8 C -0.15 -3.40 9.36 22.38 0.21 -3.20 15 9 C -0.02 -0.60 6.16 22.98 0.14 -0.45 15 10 S -0.15 -5.94 20.83 -56.49 -1.18 -7.11 15 11 C 0.03 1.48 3.16 71.24 0.23 1.71 15 12 C -0.54 -29.75 9.68 25.60 0.25 -29.50 15 13 H 0.03 2.01 7.96 -2.91 -0.02 1.98 15 14 C 0.02 1.08 5.47 84.66 0.46 1.55 15 15 N -0.94 -56.21 13.96 21.45 0.30 -55.91 15 16 Si 0.95 38.28 27.47 68.60 1.88 40.16 15 17 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 18 H -0.28 -11.39 7.11 99.48 0.71 -10.69 15 19 H -0.23 -7.64 6.54 99.48 0.65 -6.99 15 20 H 0.19 1.01 8.06 -2.91 -0.02 0.99 15 21 H 0.19 0.75 8.06 -2.91 -0.02 0.73 15 22 H 0.15 3.19 5.89 -2.91 -0.02 3.17 15 23 H 0.07 2.53 6.82 -2.39 -0.02 2.52 15 24 H 0.06 2.43 7.17 -2.39 -0.02 2.41 15 25 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 Total: -1.00 -69.06 251.44 6.30 -62.76 By element: Atomic # 1 Polarization: -1.86 SS G_CDS: 1.17 Total: -0.69 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 3.01 Total: -19.92 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: 0.65 Total: -72.89 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.76 Total: -2.31 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 1.88 Total: 40.16 kcal Atomic # 16 Polarization: -5.94 SS G_CDS: -1.18 Total: -7.11 kcal Total: -69.06 6.30 -62.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472802087.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.070 kcal (2) G-P(sol) polarization free energy of solvation -69.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds