Wall clock time and date at job start Sun Mar 29 2020 21:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47018 * 2 1 4 4 N 1.40507 * 127.06922 * 264.48942 * 3 2 1 5 5 H 0.96999 * 126.51808 * 0.02776 * 4 3 2 6 6 C 1.35969 * 106.96237 * 179.97438 * 4 3 2 7 7 N 1.30295 * 109.61992 * 0.02562 * 6 4 3 8 8 C 1.35731 * 110.03453 * 359.74254 * 7 6 4 9 9 N 1.30753 * 126.23866 * 180.25493 * 8 7 6 10 10 C 1.46500 * 120.00101 * 5.27298 * 9 8 7 11 11 C 1.53001 * 109.47492 * 116.52438 * 10 9 8 12 12 C 1.50699 * 115.55136 * 159.60207 * 11 10 9 13 13 H 1.08000 * 120.00206 * 120.84349 * 12 11 10 14 14 C 1.37882 * 119.99601 * 300.84623 * 12 11 10 15 15 N 1.31516 * 119.99814 * 191.98677 * 14 12 11 16 16 Si 1.86796 * 120.00216 * 11.98389 * 14 12 11 17 17 H 1.48494 * 109.47200 * 95.38995 * 16 14 12 18 18 H 1.48506 * 109.47340 * 215.39013 * 16 14 12 19 19 H 1.48504 * 109.47327 * 335.38661 * 16 14 12 20 20 C 1.53002 * 117.49601 * 13.88993 * 11 10 9 21 21 C 1.52996 * 59.99997 * 252.51016 * 20 11 10 22 22 H 1.09001 * 109.47298 * 295.02297 * 1 2 3 23 23 H 1.09008 * 109.46869 * 175.02332 * 1 2 3 24 24 H 1.08995 * 109.46872 * 55.02751 * 1 2 3 25 25 H 1.09000 * 109.47076 * 119.99805 * 2 1 3 26 26 H 1.09002 * 109.47236 * 239.99328 * 2 1 3 27 27 H 1.07995 * 125.18518 * 179.97438 * 6 4 3 28 28 H 1.09003 * 109.47035 * 236.52860 * 10 9 8 29 29 H 1.08999 * 109.47029 * 356.52352 * 10 9 8 30 30 H 0.96994 * 119.99992 * 179.97438 * 15 14 12 31 31 H 1.09000 * 117.49955 * 0.02562 * 20 11 10 32 32 H 1.08999 * 117.49213 * 145.02069 * 20 11 10 33 33 H 1.09001 * 117.50046 * 252.51134 * 21 20 11 34 34 H 1.09003 * 117.51673 * 107.48061 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.4021 2.1438 -1.1159 5 1 2.3947 1.8558 -2.0421 6 6 2.7849 3.3628 -0.6507 7 7 2.6634 3.3940 0.6462 8 6 2.1912 2.2043 1.0977 9 7 1.9471 1.8923 2.3438 10 6 2.0730 2.9085 3.3916 11 6 0.7065 3.1479 4.0368 12 6 0.7354 3.7774 5.4057 13 1 0.2364 4.7197 5.5774 14 6 1.3990 3.1503 6.4389 15 7 1.2323 3.5657 7.6756 16 14 2.5348 1.7108 6.0823 17 1 3.9318 2.2000 5.9642 18 1 2.4474 0.7251 7.1896 19 1 2.1279 1.0627 4.8095 20 6 -0.3982 2.1288 3.7505 21 6 -0.4556 3.5185 3.1132 22 1 -0.3634 0.4347 0.9312 23 1 -0.3633 -1.0239 -0.0892 24 1 -0.3633 0.5890 -0.8421 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.1367 4.1801 -1.2628 28 1 2.7772 2.5641 4.1490 29 1 2.4361 3.8384 2.9540 30 1 1.6988 3.1243 8.4025 31 1 -0.1513 1.2875 3.1028 32 1 -1.1042 1.9133 4.5525 33 1 -1.1995 4.2174 3.4959 34 1 -0.2465 3.5922 2.0460 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515720165.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:51 Heat of formation + Delta-G solvation = 160.767204 kcal Electronic energy + Delta-G solvation = -17051.770211 eV Core-core repulsion = 14410.436050 eV Total energy + Delta-G solvation = -2641.334161 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.29284 -36.97876 -34.74112 -33.79594 -31.91706 -30.91807 -29.35558 -26.58549 -24.53868 -23.64073 -22.22714 -21.10394 -19.85190 -18.63718 -18.03972 -16.11726 -15.81416 -15.38447 -14.98572 -14.83783 -14.12734 -13.89617 -13.57572 -12.89999 -12.57508 -12.38659 -12.10988 -11.86086 -11.30832 -10.85422 -10.77283 -10.42220 -10.18649 -10.12876 -9.87369 -9.49513 -9.26539 -8.85285 -8.56622 -8.36912 -7.90670 -6.88089 -5.94242 -3.91126 1.64195 1.76704 3.48457 3.59583 3.77173 3.79933 3.94003 4.55622 4.65363 4.75680 5.06503 5.13573 5.24446 5.27362 5.52302 5.55505 5.70712 5.83322 6.17279 6.27759 6.37791 6.41920 6.66608 6.81557 6.82829 6.92711 7.06604 7.22909 7.49317 7.55400 7.67336 8.01551 8.24728 8.69099 8.95014 9.09878 9.71641 11.16897 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.007885 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.028903 B = 3550.290530 C = 3623.778011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.165 3.835 3 N -0.451 5.451 4 N -0.528 5.528 5 H 0.437 0.563 6 C 0.354 3.646 7 N -0.564 5.564 8 C 0.509 3.491 9 N -0.572 5.572 10 C 0.109 3.891 11 C 0.015 3.985 12 C -0.484 4.484 13 H 0.074 0.926 14 C 0.078 3.922 15 N -0.898 5.898 16 Si 0.863 3.137 17 H -0.285 1.285 18 H -0.302 1.302 19 H -0.225 1.225 20 C -0.185 4.185 21 C -0.186 4.186 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.223 0.777 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.263 0.737 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.607 -6.049 -22.275 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.044 3.956 3 N -0.267 5.267 4 N -0.259 5.259 5 H 0.283 0.717 6 C 0.056 3.944 7 N -0.298 5.298 8 C 0.144 3.856 9 N -0.307 5.307 10 C -0.021 4.021 11 C 0.014 3.986 12 C -0.521 4.521 13 H 0.092 0.908 14 C -0.124 4.124 15 N -0.536 5.536 16 Si 0.691 3.309 17 H -0.212 1.212 18 H -0.230 1.230 19 H -0.147 1.147 20 C -0.222 4.222 21 C -0.223 4.223 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.239 0.761 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.458 -6.429 -20.789 21.899 hybrid contribution 0.719 -0.656 -1.299 1.623 sum 3.177 -7.084 -22.088 23.413 Atomic orbital electron populations 1.22276 0.95439 1.02053 1.03525 1.21351 0.94402 0.76721 1.03160 1.47330 1.70698 1.11379 0.97258 1.45035 1.66488 1.10936 1.03417 0.71740 1.25551 0.89941 0.86350 0.92583 1.71774 1.26281 1.23004 1.08704 1.20750 0.94056 0.82025 0.88792 1.72410 1.29811 1.33197 0.95233 1.21600 0.97683 0.91858 0.90911 1.19371 0.86053 0.98555 0.94635 1.20373 1.34148 1.07853 0.89774 0.90783 1.24935 0.96257 0.96666 0.94522 1.69951 1.42197 1.42431 0.98983 0.87222 0.80954 0.83407 0.79281 1.21242 1.23027 1.14720 1.22952 1.05074 0.91895 1.02328 1.22582 1.04150 0.99310 0.96283 0.90723 0.91264 0.92944 0.88458 0.90978 0.76099 0.92119 0.93215 0.92777 0.90119 0.90819 0.90715 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 10.24 37.16 0.38 -1.52 16 2 C 0.17 1.82 7.22 -4.04 -0.03 1.79 16 3 N -0.45 -6.13 3.76 -61.94 -0.23 -6.36 16 4 N -0.53 -4.72 7.39 29.73 0.22 -4.50 16 5 H 0.44 1.89 8.96 -182.29 -1.63 0.25 16 6 C 0.35 3.56 13.06 -89.69 -1.17 2.39 16 7 N -0.56 -9.54 10.13 -14.67 -0.15 -9.69 16 8 C 0.51 9.52 8.49 -320.87 -2.73 6.79 16 9 N -0.57 -12.78 8.62 -61.93 -0.53 -13.31 16 10 C 0.11 2.76 5.30 -4.04 -0.02 2.73 16 11 C 0.02 0.41 1.49 -155.66 -0.23 0.18 16 12 C -0.48 -14.78 9.47 -34.44 -0.33 -15.10 16 13 H 0.07 2.42 8.06 -52.49 -0.42 2.00 16 14 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 15 N -0.90 -28.90 13.96 55.43 0.77 -28.13 16 16 Si 0.86 23.36 24.96 -169.99 -4.24 19.12 16 17 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 18 H -0.30 -8.18 7.11 56.52 0.40 -7.77 16 19 H -0.22 -5.95 5.65 56.52 0.32 -5.63 16 20 C -0.18 -4.53 9.57 -26.73 -0.26 -4.79 16 21 C -0.19 -4.47 9.79 -26.73 -0.26 -4.73 16 22 H 0.07 1.08 7.93 -51.93 -0.41 0.67 16 23 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.22 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.06 1.63 3.25 -51.93 -0.17 1.46 16 29 H 0.05 1.26 7.03 -51.93 -0.37 0.90 16 30 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 31 H 0.08 1.89 6.81 -51.93 -0.35 1.54 16 32 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 33 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 34 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 284.19 15.07 4.28 4.28 Total: -1.00 -38.77 284.19 -10.58 -49.35 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.96 Total: -0.83 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -4.74 Total: -9.93 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.08 Total: -61.99 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.24 Total: 19.12 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -38.77 -10.58 -49.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515720165.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.114 kcal (2) G-P(sol) polarization free energy of solvation -38.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds