Wall clock time and date at job start Sun Mar 29 2020 21:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47018 * 2 1 4 4 N 1.40507 * 127.06922 * 264.48942 * 3 2 1 5 5 H 0.96999 * 126.51808 * 0.02776 * 4 3 2 6 6 C 1.35969 * 106.96237 * 179.97438 * 4 3 2 7 7 N 1.30295 * 109.61992 * 0.02562 * 6 4 3 8 8 C 1.35731 * 110.03453 * 359.74254 * 7 6 4 9 9 N 1.30753 * 126.23866 * 180.25493 * 8 7 6 10 10 C 1.46500 * 120.00101 * 5.27298 * 9 8 7 11 11 C 1.53001 * 109.47492 * 116.52438 * 10 9 8 12 12 C 1.50699 * 115.55136 * 159.60207 * 11 10 9 13 13 H 1.08000 * 120.00206 * 120.84349 * 12 11 10 14 14 C 1.37882 * 119.99601 * 300.84623 * 12 11 10 15 15 N 1.31516 * 119.99814 * 191.98677 * 14 12 11 16 16 Si 1.86796 * 120.00216 * 11.98389 * 14 12 11 17 17 H 1.48494 * 109.47200 * 95.38995 * 16 14 12 18 18 H 1.48506 * 109.47340 * 215.39013 * 16 14 12 19 19 H 1.48504 * 109.47327 * 335.38661 * 16 14 12 20 20 C 1.53002 * 117.49601 * 13.88993 * 11 10 9 21 21 C 1.52996 * 59.99997 * 252.51016 * 20 11 10 22 22 H 1.09001 * 109.47298 * 295.02297 * 1 2 3 23 23 H 1.09008 * 109.46869 * 175.02332 * 1 2 3 24 24 H 1.08995 * 109.46872 * 55.02751 * 1 2 3 25 25 H 1.09000 * 109.47076 * 119.99805 * 2 1 3 26 26 H 1.09002 * 109.47236 * 239.99328 * 2 1 3 27 27 H 1.07995 * 125.18518 * 179.97438 * 6 4 3 28 28 H 1.09003 * 109.47035 * 236.52860 * 10 9 8 29 29 H 1.08999 * 109.47029 * 356.52352 * 10 9 8 30 30 H 0.96994 * 119.99992 * 179.97438 * 15 14 12 31 31 H 1.09000 * 117.49955 * 0.02562 * 20 11 10 32 32 H 1.08999 * 117.49213 * 145.02069 * 20 11 10 33 33 H 1.09001 * 117.50046 * 252.51134 * 21 20 11 34 34 H 1.09003 * 117.51673 * 107.48061 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.4021 2.1438 -1.1159 5 1 2.3947 1.8558 -2.0421 6 6 2.7849 3.3628 -0.6507 7 7 2.6634 3.3940 0.6462 8 6 2.1912 2.2043 1.0977 9 7 1.9471 1.8923 2.3438 10 6 2.0730 2.9085 3.3916 11 6 0.7065 3.1479 4.0368 12 6 0.7354 3.7774 5.4057 13 1 0.2364 4.7197 5.5774 14 6 1.3990 3.1503 6.4389 15 7 1.2323 3.5657 7.6756 16 14 2.5348 1.7108 6.0823 17 1 3.9318 2.2000 5.9642 18 1 2.4474 0.7251 7.1896 19 1 2.1279 1.0627 4.8095 20 6 -0.3982 2.1288 3.7505 21 6 -0.4556 3.5185 3.1132 22 1 -0.3634 0.4347 0.9312 23 1 -0.3633 -1.0239 -0.0892 24 1 -0.3633 0.5890 -0.8421 25 1 1.8933 -0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.1367 4.1801 -1.2628 28 1 2.7772 2.5641 4.1490 29 1 2.4361 3.8384 2.9540 30 1 1.6988 3.1243 8.4025 31 1 -0.1513 1.2875 3.1028 32 1 -1.1042 1.9133 4.5525 33 1 -1.1995 4.2174 3.4959 34 1 -0.2465 3.5922 2.0460 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515720165.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:51 Heat of formation + Delta-G solvation = 134.068383 kcal Electronic energy + Delta-G solvation = -17052.927959 eV Core-core repulsion = 14410.436050 eV Total energy + Delta-G solvation = -2642.491909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.37512 -38.88616 -35.70176 -35.23707 -34.22286 -32.05201 -30.51975 -28.56955 -26.36376 -24.67318 -23.24829 -23.01255 -21.31038 -20.41040 -19.10586 -18.24560 -17.20260 -16.69111 -16.46589 -16.08543 -15.52819 -15.42139 -14.88525 -14.79376 -14.25843 -13.92477 -13.73280 -12.97954 -12.94266 -12.63783 -12.26399 -12.12296 -11.83714 -11.55276 -11.39629 -11.33556 -10.97107 -10.87575 -10.60491 -10.35878 -9.71281 -8.33251 -8.18561 -6.32868 0.68946 0.80104 1.33478 1.39727 1.66179 2.40562 2.51847 2.95778 3.05700 3.41638 3.75205 3.97413 4.07596 4.23593 4.31089 4.42324 4.44865 4.56537 4.72464 4.80888 4.86380 4.90850 4.95659 5.12378 5.19906 5.33301 5.43984 5.50524 5.58979 5.76024 5.85088 6.31388 6.70122 6.78723 7.20167 7.32615 7.57300 8.82482 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.007885 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.028903 B = 3550.290530 C = 3623.778011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.158 3.842 3 N -0.450 5.450 4 N -0.496 5.496 5 H 0.464 0.536 6 C 0.384 3.616 7 N -0.636 5.636 8 C 0.517 3.483 9 N -0.626 5.626 10 C 0.131 3.869 11 C -0.010 4.010 12 C -0.493 4.493 13 H 0.033 0.967 14 C 0.029 3.971 15 N -0.942 5.942 16 Si 0.933 3.067 17 H -0.284 1.284 18 H -0.301 1.301 19 H -0.216 1.216 20 C -0.167 4.167 21 C -0.165 4.165 22 H 0.033 0.967 23 H 0.094 0.906 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.285 0.715 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.267 0.733 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.391 -7.562 -26.725 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.038 3.962 3 N -0.263 5.263 4 N -0.227 5.227 5 H 0.315 0.685 6 C 0.088 3.912 7 N -0.373 5.373 8 C 0.150 3.850 9 N -0.367 5.367 10 C 0.000 4.000 11 C -0.012 4.012 12 C -0.531 4.531 13 H 0.051 0.949 14 C -0.169 4.169 15 N -0.581 5.581 16 Si 0.759 3.241 17 H -0.211 1.211 18 H -0.229 1.229 19 H -0.138 1.138 20 C -0.205 4.205 21 C -0.202 4.202 22 H 0.052 0.948 23 H 0.112 0.888 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.137 0.863 27 H 0.300 0.700 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.233 -7.982 -25.405 26.825 hybrid contribution 0.458 -0.107 -0.256 0.536 sum 3.691 -8.089 -25.662 27.158 Atomic orbital electron populations 1.22190 0.95222 1.03448 1.01605 1.21620 0.94486 0.75518 1.04610 1.47649 1.68951 1.12013 0.97682 1.45236 1.63917 1.10068 1.03524 0.68482 1.26780 0.86082 0.87204 0.91163 1.71765 1.30353 1.23042 1.12143 1.20987 0.91586 0.83314 0.89092 1.72288 1.36265 1.31867 0.96252 1.21010 0.95239 0.92110 0.91617 1.19341 0.88257 1.00171 0.93418 1.20571 1.33533 1.06578 0.92451 0.94898 1.25680 0.97572 0.99535 0.94135 1.70062 1.43689 1.44370 0.99988 0.86126 0.78711 0.80117 0.79106 1.21115 1.22905 1.13775 1.22822 1.03300 0.92425 1.01968 1.22480 1.02457 0.98800 0.96484 0.94797 0.88762 0.92038 0.90292 0.86292 0.70029 0.94738 0.94839 0.92443 0.88651 0.91925 0.91169 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 10.24 71.98 0.74 -2.37 16 2 C 0.16 2.90 7.22 86.38 0.62 3.52 16 3 N -0.45 -10.60 3.76 -349.87 -1.32 -11.92 16 4 N -0.50 -6.14 7.39 -59.85 -0.44 -6.58 16 5 H 0.46 0.90 8.96 -213.06 -1.91 -1.01 16 6 C 0.38 5.81 13.06 180.02 2.35 8.16 16 7 N -0.64 -20.01 10.13 -200.32 -2.03 -22.04 16 8 C 0.52 18.38 8.49 260.81 2.22 20.60 16 9 N -0.63 -27.80 8.62 -349.85 -3.01 -30.81 16 10 C 0.13 6.75 5.30 86.38 0.46 7.20 16 11 C -0.01 -0.56 1.49 -52.93 -0.08 -0.64 16 12 C -0.49 -31.56 9.47 25.60 0.24 -31.32 16 13 H 0.03 2.29 8.06 -2.91 -0.02 2.27 16 14 C 0.03 1.85 5.47 84.66 0.46 2.31 16 15 N -0.94 -62.96 13.96 21.45 0.30 -62.66 16 16 Si 0.93 50.53 24.96 68.60 1.71 52.25 16 17 H -0.28 -15.15 7.11 99.48 0.71 -14.45 16 18 H -0.30 -15.95 7.11 99.48 0.71 -15.25 16 19 H -0.22 -11.36 5.65 99.48 0.56 -10.80 16 20 C -0.17 -8.28 9.57 30.59 0.29 -7.99 16 21 C -0.17 -7.99 9.79 30.59 0.30 -7.69 16 22 H 0.03 0.92 7.93 -2.39 -0.02 0.91 16 23 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.28 0.34 8.06 -2.91 -0.02 0.32 16 28 H 0.03 1.90 3.25 -2.39 -0.01 1.89 16 29 H 0.03 1.75 7.03 -2.39 -0.02 1.74 16 30 H 0.27 16.65 8.31 -92.71 -0.77 15.88 16 31 H 0.10 4.46 6.81 -2.39 -0.02 4.44 16 32 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.07 3.40 8.14 -2.39 -0.02 3.39 16 34 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -90.88 284.19 1.87 -89.01 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -0.95 Total: 0.96 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 7.60 Total: -8.21 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -6.50 Total: -134.01 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 1.71 Total: 52.25 kcal Total: -90.88 1.87 -89.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515720165.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.078 kcal (2) G-P(sol) polarization free energy of solvation -90.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds