Wall clock time and date at job start Sun Mar 29 2020 22:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35808 * 119.99880 * 2 1 4 4 C 1.41274 * 119.99773 * 180.02562 * 3 2 1 5 5 O 1.21852 * 120.00327 * 359.97438 * 4 3 2 6 6 N 1.34786 * 120.00075 * 179.97438 * 4 3 2 7 7 C 1.36766 * 120.00329 * 179.97438 * 6 4 3 8 8 H 1.08006 * 119.99793 * 359.97438 * 7 6 4 9 9 C 1.39045 * 119.99873 * 180.02562 * 7 6 4 10 10 N 1.31374 * 120.00558 * 359.97438 * 9 7 6 11 11 Si 1.86810 * 119.99668 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47058 * 90.00269 * 11 9 7 13 13 H 1.48499 * 109.46950 * 210.00059 * 11 9 7 14 14 H 1.48496 * 109.47297 * 329.99851 * 11 9 7 15 15 C 1.41507 * 120.00116 * 179.97438 * 2 1 3 16 16 C 1.37114 * 125.47561 * 295.00029 * 15 2 1 17 17 C 1.37425 * 113.20424 * 179.97438 * 16 15 2 18 18 C 1.33878 * 115.13335 * 0.02562 * 17 16 15 19 19 S 1.70601 * 111.02874 * 359.97438 * 18 17 16 20 20 H 1.09004 * 109.47043 * 270.00623 * 1 2 3 21 21 H 1.09000 * 109.47014 * 30.00245 * 1 2 3 22 22 H 1.08994 * 109.46986 * 150.00264 * 1 2 3 23 23 H 1.07994 * 120.00001 * 359.97438 * 3 2 1 24 24 H 0.97004 * 119.99333 * 359.97438 * 6 4 3 25 25 H 0.96991 * 120.00264 * 180.02562 * 10 9 7 26 26 H 1.07994 * 123.39705 * 0.24681 * 16 15 2 27 27 H 1.08000 * 122.42649 * 180.02562 * 17 16 15 28 28 H 1.07997 * 124.48676 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1860 1.1761 0.0000 4 6 3.5987 1.1761 -0.0005 5 8 4.2080 0.1209 -0.0005 6 7 4.2727 2.3434 -0.0011 7 6 5.6404 2.3434 -0.0011 8 1 6.1804 1.4081 -0.0002 9 6 6.3355 3.5476 -0.0011 10 7 5.6787 4.6854 -0.0016 11 14 8.2036 3.5476 -0.0003 12 1 8.6991 3.5473 -1.4002 13 1 8.6983 4.7602 0.6996 14 1 8.6984 2.3353 0.7002 15 6 2.2145 -1.2255 0.0005 16 6 2.2038 -2.1501 1.0129 17 6 2.9817 -3.2517 0.7485 18 6 3.6085 -3.2345 -0.4344 19 16 3.2486 -1.8073 -1.2971 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 1.6460 2.1114 -0.0004 24 1 3.7876 3.1834 -0.0014 25 1 6.1637 5.5253 -0.0020 26 1 1.6374 -2.0272 1.9242 27 1 3.0801 -4.0717 1.4444 28 1 4.2561 -4.0200 -0.7947 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546236210.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:35 Heat of formation + Delta-G solvation = -2.590053 kcal Electronic energy + Delta-G solvation = -14193.014993 eV Core-core repulsion = 11721.505493 eV Total energy + Delta-G solvation = -2471.509500 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51420 -38.56470 -36.28485 -35.29228 -33.29286 -29.74540 -29.10319 -26.73560 -25.22054 -22.36234 -20.79410 -20.13691 -19.51377 -18.08303 -17.17272 -16.55805 -16.09441 -15.64918 -15.29386 -14.90151 -14.58180 -14.10614 -13.56111 -13.41554 -13.27809 -13.13327 -12.98664 -12.85055 -12.57278 -12.42035 -12.12704 -11.59305 -11.50189 -10.51732 -10.05264 -9.87092 -9.15034 -8.61643 -8.49956 -5.89892 -0.21723 0.62388 1.23177 1.39239 1.40032 1.51182 1.53118 2.00831 2.28987 2.59365 3.36914 3.46505 4.05404 4.30630 4.33303 4.60573 4.63797 4.76053 4.84223 4.89351 5.08877 5.22351 5.37123 5.40791 5.55445 5.66833 5.82188 6.05859 6.61547 7.13148 7.57429 8.17573 8.66721 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.032435 B = 0.007302 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.059020 B = 3833.444585 C = 4427.931693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.003 3.997 3 C -0.201 4.201 4 C 0.448 3.552 5 O -0.612 6.612 6 N -0.561 5.561 7 C -0.322 4.322 8 H 0.082 0.918 9 C -0.014 4.014 10 N -0.916 5.916 11 Si 0.993 3.007 12 H -0.270 1.270 13 H -0.270 1.270 14 H -0.273 1.273 15 C -0.159 4.159 16 C -0.147 4.147 17 C -0.151 4.151 18 C -0.287 4.287 19 S 0.214 5.786 20 H 0.093 0.907 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.145 0.855 24 H 0.393 0.607 25 H 0.279 0.721 26 H 0.149 0.851 27 H 0.151 0.849 28 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -8.736 -0.647 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.003 4.003 3 C -0.225 4.225 4 C 0.240 3.760 5 O -0.502 6.502 6 N -0.196 5.196 7 C -0.452 4.452 8 H 0.100 0.900 9 C -0.214 4.214 10 N -0.556 5.556 11 Si 0.817 3.183 12 H -0.195 1.195 13 H -0.195 1.195 14 H -0.198 1.198 15 C -0.277 4.277 16 C -0.177 4.177 17 C -0.183 4.183 18 C -0.424 4.424 19 S 0.487 5.513 20 H 0.111 0.889 21 H 0.107 0.893 22 H 0.097 0.903 23 H 0.163 0.837 24 H 0.227 0.773 25 H 0.089 0.911 26 H 0.167 0.833 27 H 0.169 0.831 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.480 -8.693 -2.103 12.325 hybrid contribution 0.666 0.185 1.508 1.659 sum -7.814 -8.508 -0.594 11.567 Atomic orbital electron populations 1.20934 0.86953 1.04214 1.04070 1.19690 0.97145 0.89353 0.94076 1.22162 0.93229 0.99516 1.07596 1.17527 0.89634 0.84090 0.84750 1.90806 1.71841 1.30336 1.57248 1.42025 1.06753 1.07604 1.63208 1.19698 0.82862 0.94123 1.48538 0.90042 1.26093 1.05071 0.93958 0.96320 1.69654 1.38370 0.98086 1.49506 0.84919 0.76729 0.77947 0.78716 1.19516 1.19482 1.19819 1.22450 1.04644 0.99686 1.00929 1.20765 1.03635 0.93880 0.99452 1.20004 1.00069 1.00471 0.97800 1.25301 1.10050 1.04401 1.02673 1.82747 1.41439 1.08654 1.18500 0.88860 0.89295 0.90316 0.83748 0.77280 0.91139 0.83323 0.83148 0.81130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.23 10.02 71.24 0.71 -1.52 15 2 C 0.00 0.09 5.71 -19.62 -0.11 -0.02 15 3 C -0.20 -7.60 9.48 22.45 0.21 -7.39 15 4 C 0.45 22.01 7.45 84.99 0.63 22.64 15 5 O -0.61 -32.97 11.26 -4.84 -0.05 -33.03 15 6 N -0.56 -29.64 5.26 -315.38 -1.66 -31.30 15 7 C -0.32 -18.47 9.67 84.12 0.81 -17.66 15 8 H 0.08 4.97 7.15 -2.91 -0.02 4.94 15 9 C -0.01 -0.76 5.50 84.96 0.47 -0.29 15 10 N -0.92 -49.82 13.05 21.68 0.28 -49.54 15 11 Si 0.99 43.24 29.55 68.60 2.03 45.26 15 12 H -0.27 -11.36 7.11 99.48 0.71 -10.66 15 13 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 15 C -0.16 -5.75 3.87 22.81 0.09 -5.66 15 16 C -0.15 -4.88 10.25 21.81 0.22 -4.65 15 17 C -0.15 -4.77 10.15 21.09 0.21 -4.56 15 18 C -0.29 -9.43 10.92 66.83 0.73 -8.70 15 19 S 0.21 7.94 20.28 -56.49 -1.15 6.79 15 20 H 0.09 1.68 8.14 -2.39 -0.02 1.66 15 21 H 0.09 1.59 8.08 -2.39 -0.02 1.58 15 22 H 0.08 1.52 8.09 -2.39 -0.02 1.50 15 23 H 0.14 4.54 8.06 -2.91 -0.02 4.52 15 24 H 0.39 19.91 7.85 -92.71 -0.73 19.18 15 25 H 0.28 14.16 8.31 -92.71 -0.77 13.39 15 26 H 0.15 4.20 8.06 -2.91 -0.02 4.17 15 27 H 0.15 3.82 8.06 -2.91 -0.02 3.79 15 28 H 0.17 4.67 8.06 -2.91 -0.02 4.65 15 Total: -1.00 -66.46 263.59 3.88 -62.58 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.45 Total: 27.04 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 3.98 Total: -27.81 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -1.38 Total: -80.83 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.05 Total: -33.03 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 7.94 SS G_CDS: -1.15 Total: 6.79 kcal Total: -66.46 3.88 -62.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546236210.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.986 kcal (2) G-P(sol) polarization free energy of solvation -66.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds