Wall clock time and date at job start Sun Mar 29 2020 22:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00045 * 2 1 4 4 H 1.48504 * 109.47009 * 269.99589 * 3 2 1 5 5 H 1.48498 * 109.47260 * 29.99255 * 3 2 1 6 6 H 1.48492 * 109.47178 * 149.99750 * 3 2 1 7 7 C 1.37872 * 119.99538 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00442 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99678 * 180.02562 * 7 2 1 10 10 S 1.81002 * 109.47175 * 180.02562 * 9 7 2 11 11 C 1.76206 * 99.99791 * 180.02562 * 10 9 7 12 12 N 1.31991 * 120.30831 * 359.97438 * 11 10 9 13 13 C 1.33526 * 121.04389 * 180.02562 * 12 11 10 14 14 C 1.34909 * 121.44684 * 0.02562 * 13 12 11 15 15 N 1.36756 * 119.98432 * 359.97438 * 14 13 12 16 16 N 1.28585 * 134.18291 * 180.02562 * 15 14 13 17 17 N 1.28804 * 109.26689 * 179.97438 * 16 15 14 18 18 N 1.29025 * 109.99497 * 0.02562 * 17 16 15 19 19 C 1.32328 * 107.59215 * 359.97438 * 18 17 16 20 20 H 0.97006 * 119.99850 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47121 * 59.99926 * 9 7 2 22 22 H 1.08998 * 109.47636 * 300.00293 * 9 7 2 23 23 H 1.07998 * 119.27065 * 180.02562 * 13 12 11 24 24 H 1.08002 * 120.00947 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 16 4.1147 -2.9006 0.0010 11 6 5.8528 -2.6106 0.0025 12 7 6.3223 -1.3770 0.0028 13 6 7.6364 -1.1404 0.0034 14 6 8.5330 -2.1484 0.0033 15 7 8.1023 -3.4463 0.0029 16 7 8.6951 -4.5873 0.0031 17 7 7.8121 -5.5251 0.0031 18 7 6.6270 -5.0151 0.0025 19 6 6.7582 -3.6983 0.0025 20 1 -0.4850 0.8401 -0.0004 21 1 3.8744 -0.6801 0.8911 22 1 3.8752 -0.6805 -0.8888 23 1 7.9891 -0.1196 0.0041 24 1 9.5908 -1.9304 0.0042 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559208642.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:30 Heat of formation + Delta-G solvation = 141.372812 kcal Electronic energy + Delta-G solvation = -13733.207541 eV Core-core repulsion = 11196.693147 eV Total energy + Delta-G solvation = -2536.514394 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.038 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.84345 -40.70754 -36.61878 -35.23035 -33.73106 -32.41517 -31.44575 -27.17007 -26.22213 -25.13157 -24.36916 -20.75069 -19.77348 -19.23120 -18.83916 -18.36673 -16.72112 -16.27300 -15.73772 -15.32869 -15.24923 -14.53239 -14.45455 -14.09976 -13.82322 -13.81871 -12.76158 -12.71856 -12.61461 -12.20100 -11.80144 -11.79486 -11.34303 -11.27183 -10.88963 -10.61319 -8.76131 -8.36405 -6.48939 -1.14265 -0.63727 0.08408 0.75011 0.82579 1.31368 1.41026 1.45673 1.55547 1.90083 2.26909 2.33520 2.52251 2.97882 3.19247 3.77721 3.81801 3.95456 4.45192 4.52241 4.69762 4.74885 5.12554 5.29060 6.02385 6.14144 6.55574 7.07024 7.15540 8.78428 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.045876 B = 0.006867 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.194440 B = 4076.368962 C = 4671.420374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.026 3.974 3 Si 0.949 3.051 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.235 1.235 7 C -0.542 4.542 8 H 0.043 0.957 9 C 0.026 3.974 10 S 0.015 5.985 11 C 0.182 3.818 12 N -0.469 5.469 13 C 0.107 3.893 14 C 0.010 3.990 15 N -0.198 5.198 16 N -0.117 5.117 17 N -0.060 5.060 18 N -0.283 5.283 19 C 0.132 3.868 20 H 0.274 0.726 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.251 0.749 24 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.321 2.707 0.043 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.175 4.175 3 Si 0.770 3.230 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.158 1.158 7 C -0.580 4.580 8 H 0.061 0.939 9 C -0.123 4.123 10 S 0.259 5.741 11 C -0.089 4.089 12 N -0.191 5.191 13 C -0.040 4.040 14 C -0.122 4.122 15 N 0.012 4.988 16 N -0.101 5.101 17 N -0.051 5.051 18 N -0.143 5.143 19 C -0.131 4.131 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.267 0.733 24 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 18.473 0.967 0.045 18.498 hybrid contribution 0.660 1.678 -0.026 1.803 sum 19.132 2.645 0.019 19.314 Atomic orbital electron populations 1.70009 1.08355 1.28930 1.50088 1.25837 0.95578 1.03208 0.92913 0.85676 0.79928 0.77600 0.79768 1.18655 1.20680 1.15792 1.20620 0.88981 0.94302 1.54142 0.93864 1.21548 0.98030 0.90555 1.02157 1.86421 0.88050 1.15409 1.84219 1.23347 1.00771 0.87609 0.97185 1.68995 1.18112 1.17146 1.14838 1.23595 0.85307 1.02410 0.92709 1.23661 1.06103 0.75425 1.07050 1.45880 1.05817 1.08820 1.38290 1.78818 1.20878 0.86037 1.24321 1.78542 0.92761 1.21364 1.12460 1.75532 1.16089 1.02775 1.19919 1.23616 0.86540 0.94293 1.08620 0.91730 0.91962 0.92184 0.73280 0.73893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.30 13.96 21.45 0.30 -55.00 14 2 C 0.03 1.40 5.47 84.65 0.46 1.87 14 3 Si 0.95 39.80 27.47 68.60 1.88 41.69 14 4 H -0.26 -10.51 7.11 99.48 0.71 -9.81 14 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 14 6 H -0.24 -8.86 6.54 99.48 0.65 -8.21 14 7 C -0.54 -29.37 9.68 25.60 0.25 -29.12 14 8 H 0.04 2.63 7.95 -2.91 -0.02 2.61 14 9 C 0.03 1.11 3.69 71.24 0.26 1.38 14 10 S 0.02 0.61 22.01 -56.49 -1.24 -0.64 14 11 C 0.18 5.94 7.04 85.48 0.60 6.54 14 12 N -0.47 -12.71 9.28 -191.93 -1.78 -14.50 14 13 C 0.11 1.59 11.05 83.67 0.92 2.52 14 14 C 0.01 0.14 11.21 83.16 0.93 1.07 14 15 N -0.20 -5.07 3.65 -192.11 -0.70 -5.78 14 16 N -0.12 -3.41 13.41 37.02 0.50 -2.91 14 17 N -0.06 -2.04 13.40 37.02 0.50 -1.54 14 18 N -0.28 -10.23 12.44 -55.28 -0.69 -10.92 14 19 C 0.13 4.28 7.82 134.44 1.05 5.34 14 20 H 0.27 14.94 8.31 -92.70 -0.77 14.17 14 21 H 0.06 2.62 7.19 -2.39 -0.02 2.61 14 22 H 0.06 2.50 7.56 -2.40 -0.02 2.48 14 23 H 0.25 0.87 8.06 -2.91 -0.02 0.85 14 24 H 0.24 0.71 8.06 -2.91 -0.02 0.68 14 Total: -1.00 -70.01 239.47 4.44 -65.57 By element: Atomic # 1 Polarization: -6.76 SS G_CDS: 1.19 Total: -5.58 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 4.48 Total: -10.40 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -1.88 Total: -90.64 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.88 Total: 41.69 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -1.24 Total: -0.64 kcal Total: -70.01 4.44 -65.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559208642.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.944 kcal (2) G-P(sol) polarization free energy of solvation -70.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds