Wall clock time and date at job start Sun Mar 29 2020 21:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99516 * 2 1 4 4 H 1.48507 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47234 * 300.00292 * 3 2 1 6 6 H 1.48492 * 109.47419 * 60.00670 * 3 2 1 7 7 C 1.37880 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99715 * 359.97438 * 7 2 1 10 10 C 1.53009 * 115.54680 * 177.28654 * 9 7 2 11 11 N 1.46892 * 109.47231 * 279.56268 * 10 9 7 12 12 C 1.48460 * 111.00113 * 281.22615 * 11 10 9 13 13 C 1.54908 * 103.21970 * 200.05658 * 12 11 10 14 14 C 1.54419 * 102.98273 * 37.78830 * 13 12 11 15 15 H 1.09004 * 112.70100 * 100.21348 * 14 13 12 16 16 C 1.56326 * 109.17815 * 226.60095 * 14 13 12 17 17 N 1.48562 * 104.57432 * 137.02290 * 16 14 13 18 18 C 1.48491 * 104.21388 * 319.58471 * 17 16 14 19 19 C 1.47884 * 111.00193 * 163.56649 * 11 10 9 20 20 H 1.08999 * 111.75893 * 23.05302 * 19 11 10 21 21 C 1.52993 * 117.52208 * 322.98829 * 9 7 2 22 22 C 1.52996 * 60.00083 * 107.48257 * 21 9 7 23 23 H 0.96996 * 120.00657 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.46699 * 39.56538 * 10 9 7 25 25 H 1.08997 * 109.46504 * 159.55802 * 10 9 7 26 26 H 1.09000 * 110.67196 * 318.48835 * 12 11 10 27 27 H 1.09008 * 110.66987 * 81.62700 * 12 11 10 28 28 H 1.09004 * 110.71594 * 279.42119 * 13 12 11 29 29 H 1.08999 * 110.86695 * 156.23122 * 13 12 11 30 30 H 1.08997 * 110.76506 * 18.06879 * 16 14 13 31 31 H 1.08997 * 110.05004 * 255.62081 * 16 14 13 32 32 H 1.00895 * 111.00223 * 79.14071 * 17 16 14 33 33 H 1.08999 * 110.37113 * 280.50679 * 18 17 16 34 34 H 1.08996 * 110.46417 * 158.21947 * 18 17 16 35 35 H 1.08999 * 117.50274 * 214.97455 * 21 9 7 36 36 H 1.09000 * 117.49756 * 359.97438 * 21 9 7 37 37 H 1.09003 * 117.49910 * 252.51291 * 22 21 9 38 38 H 1.09000 * 117.51860 * 107.48363 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8901 2.3966 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.1154 -3.7600 -0.0665 11 7 2.5251 -4.0007 -1.4565 12 6 1.4243 -4.6210 -2.2358 13 6 2.1594 -5.2602 -3.4402 14 6 3.4649 -5.7902 -2.8083 15 1 3.4301 -6.8608 -2.6064 16 6 4.6751 -5.3783 -3.7081 17 7 5.7159 -4.9247 -2.7500 18 6 4.9611 -4.1545 -1.7292 19 6 3.6558 -4.9518 -1.5186 20 1 3.7044 -5.5804 -0.6295 21 6 -0.0403 -2.5699 0.8167 22 6 -0.1032 -2.5330 -0.7115 23 1 -0.4851 0.8400 0.0004 24 1 3.0007 -3.6266 0.5554 25 1 1.5418 -4.6129 0.2962 26 1 0.9174 -5.3842 -1.6453 27 1 0.7179 -3.8629 -2.5745 28 1 2.3762 -4.5108 -4.2015 29 1 1.5754 -6.0783 -3.8619 30 1 4.3979 -4.5667 -4.3808 31 1 5.0293 -6.2391 -4.2750 32 1 6.1900 -5.7112 -2.3320 33 1 4.7387 -3.1530 -2.0973 34 1 5.5261 -4.0992 -0.7988 35 1 -0.2743 -3.5146 1.3075 36 1 -0.3450 -1.6724 1.3550 37 1 -0.4494 -1.6111 -1.1789 38 1 -0.3783 -3.4534 -1.2266 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:25 Heat of formation + Delta-G solvation = 49.768190 kcal Electronic energy + Delta-G solvation = -17657.460355 eV Core-core repulsion = 15114.853259 eV Total energy + Delta-G solvation = -2542.607096 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.74768 -36.82058 -34.69401 -31.87706 -31.09177 -27.96724 -27.31626 -25.73857 -24.11216 -21.80283 -21.05848 -20.36522 -19.13283 -18.91562 -16.71202 -15.89316 -15.19500 -14.87368 -14.59771 -14.28290 -13.48949 -13.26258 -13.03743 -12.44660 -12.28669 -11.99235 -11.55474 -11.39411 -11.08547 -10.97798 -10.81948 -10.57478 -10.52074 -10.46342 -10.34467 -10.06573 -9.76939 -9.40717 -8.81300 -8.58912 -8.19872 -7.97935 -7.68099 -5.86410 -3.90122 3.33370 3.41733 3.46509 4.30500 4.47486 4.49673 4.65620 4.92487 5.08651 5.24538 5.41182 5.48899 5.53663 5.63005 5.77889 5.83682 5.93045 6.04283 6.05938 6.14043 6.17285 6.32211 6.43492 6.46170 6.54343 6.57659 6.74162 6.79992 7.07582 7.26076 7.40435 7.44848 7.58432 7.75122 7.85721 8.10710 8.31521 8.61660 9.05430 9.63737 11.09320 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027884 B = 0.007984 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.905613 B = 3506.206569 C = 4066.526078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.054 3.946 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.454 4.454 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.092 3.908 11 N -0.484 5.484 12 C 0.038 3.962 13 C -0.115 4.115 14 C -0.135 4.135 15 H 0.078 0.922 16 C 0.051 3.949 17 N -0.671 5.671 18 C 0.055 3.945 19 C 0.029 3.971 20 H 0.052 0.948 21 C -0.194 4.194 22 C -0.186 4.186 23 H 0.256 0.744 24 H 0.063 0.937 25 H 0.013 0.987 26 H 0.032 0.968 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.329 0.671 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.457 -11.066 -4.801 13.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.492 4.492 8 H 0.078 0.922 9 C 0.029 3.971 10 C -0.036 4.036 11 N -0.207 5.207 12 C -0.090 4.090 13 C -0.153 4.153 14 C -0.156 4.156 15 H 0.096 0.904 16 C -0.079 4.079 17 N -0.296 5.296 18 C -0.075 4.075 19 C -0.082 4.082 20 H 0.070 0.930 21 C -0.233 4.233 22 C -0.224 4.224 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.031 0.969 26 H 0.050 0.950 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.143 0.857 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.121 0.879 37 H 0.132 0.868 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.787 -9.819 -5.402 12.613 hybrid contribution -0.552 -0.690 1.054 1.376 sum 5.235 -10.509 -4.348 12.520 Atomic orbital electron populations 1.70017 1.05731 1.25599 1.50943 1.25001 0.94943 0.99121 0.95515 0.86493 0.80175 0.83740 0.77340 1.19745 1.21179 1.21308 1.20584 0.92585 0.88578 1.47433 0.92181 1.18835 0.85655 0.92143 1.00424 1.21856 0.98271 0.96158 0.87265 1.64791 1.04318 1.38576 1.13036 1.23432 0.94729 0.97113 0.93698 1.22543 0.95030 0.99585 0.98158 1.23662 0.97337 0.98652 0.95933 0.90360 1.23465 0.89590 0.99535 0.95275 1.63351 1.25357 1.25087 1.15804 1.23066 0.90787 0.99304 0.94348 1.23834 0.95159 0.93020 0.96149 0.93021 1.22819 1.06812 0.99035 0.94624 1.22953 1.05277 1.00080 0.94108 0.93391 0.91874 0.96917 0.94998 0.88833 0.90494 0.91888 0.89717 0.91661 0.85720 0.88253 0.91563 0.94387 0.87870 0.86799 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.88 8.60 55.43 0.48 -24.40 16 2 C 0.05 1.50 5.28 -17.82 -0.09 1.40 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.45 -12.47 9.19 -34.44 -0.32 -12.78 16 8 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 9 C 0.03 0.75 2.27 -155.66 -0.35 0.40 16 10 C 0.09 1.94 4.80 -3.82 -0.02 1.92 16 11 N -0.48 -9.13 4.65 -221.17 -1.03 -10.16 16 12 C 0.04 0.65 5.08 -1.95 -0.01 0.64 16 13 C -0.11 -1.58 6.62 -24.98 -0.17 -1.74 16 14 C -0.14 -1.76 4.13 -87.03 -0.36 -2.12 16 15 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 16 C 0.05 0.63 7.06 -1.12 -0.01 0.62 16 17 N -0.67 -8.80 7.62 -108.56 -0.83 -9.63 16 18 C 0.05 0.84 7.16 -2.21 -0.02 0.82 16 19 C 0.03 0.45 3.34 -65.38 -0.22 0.23 16 20 H 0.05 0.79 7.83 -51.93 -0.41 0.39 16 21 C -0.19 -4.88 9.32 -26.74 -0.25 -5.13 16 22 C -0.19 -4.63 8.20 -26.74 -0.22 -4.85 16 23 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.06 1.32 7.97 -51.93 -0.41 0.91 16 25 H 0.01 0.26 7.49 -51.93 -0.39 -0.13 16 26 H 0.03 0.54 7.73 -51.93 -0.40 0.14 16 27 H 0.09 1.78 6.08 -51.92 -0.32 1.46 16 28 H 0.08 1.08 7.23 -51.93 -0.38 0.70 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.12 7.27 -51.93 -0.38 0.74 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.33 3.64 8.92 -39.29 -0.35 3.29 16 33 H 0.10 1.81 7.96 -51.93 -0.41 1.39 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.10 2.85 6.52 -51.93 -0.34 2.51 16 37 H 0.11 3.17 6.05 -51.93 -0.31 2.85 16 38 H 0.04 0.94 5.78 -51.93 -0.30 0.64 16 LS Contribution 287.79 15.07 4.34 4.34 Total: -1.00 -28.09 287.79 -10.14 -38.23 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.05 Total: 5.72 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.03 Total: -20.59 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -1.38 Total: -44.19 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.09 -10.14 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.001 kcal (2) G-P(sol) polarization free energy of solvation -28.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds