Wall clock time and date at job start Sun Mar 29 2020 21:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99516 * 2 1 4 4 H 1.48507 * 109.46971 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47234 * 300.00292 * 3 2 1 6 6 H 1.48492 * 109.47419 * 60.00670 * 3 2 1 7 7 C 1.37880 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99715 * 359.97438 * 7 2 1 10 10 C 1.53009 * 115.54680 * 177.28654 * 9 7 2 11 11 N 1.46892 * 109.47231 * 279.56268 * 10 9 7 12 12 C 1.48460 * 111.00113 * 281.22615 * 11 10 9 13 13 C 1.54908 * 103.21970 * 200.05658 * 12 11 10 14 14 C 1.54419 * 102.98273 * 37.78830 * 13 12 11 15 15 H 1.09004 * 112.70100 * 100.21348 * 14 13 12 16 16 C 1.56326 * 109.17815 * 226.60095 * 14 13 12 17 17 N 1.48562 * 104.57432 * 137.02290 * 16 14 13 18 18 C 1.48491 * 104.21388 * 319.58471 * 17 16 14 19 19 C 1.47884 * 111.00193 * 163.56649 * 11 10 9 20 20 H 1.08999 * 111.75893 * 23.05302 * 19 11 10 21 21 C 1.52993 * 117.52208 * 322.98829 * 9 7 2 22 22 C 1.52996 * 60.00083 * 107.48257 * 21 9 7 23 23 H 0.96996 * 120.00657 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.46699 * 39.56538 * 10 9 7 25 25 H 1.08997 * 109.46504 * 159.55802 * 10 9 7 26 26 H 1.09000 * 110.67196 * 318.48835 * 12 11 10 27 27 H 1.09008 * 110.66987 * 81.62700 * 12 11 10 28 28 H 1.09004 * 110.71594 * 279.42119 * 13 12 11 29 29 H 1.08999 * 110.86695 * 156.23122 * 13 12 11 30 30 H 1.08997 * 110.76506 * 18.06879 * 16 14 13 31 31 H 1.08997 * 110.05004 * 255.62081 * 16 14 13 32 32 H 1.00895 * 111.00223 * 79.14071 * 17 16 14 33 33 H 1.08999 * 110.37113 * 280.50679 * 18 17 16 34 34 H 1.08996 * 110.46417 * 158.21947 * 18 17 16 35 35 H 1.08999 * 117.50274 * 214.97455 * 21 9 7 36 36 H 1.09000 * 117.49756 * 359.97438 * 21 9 7 37 37 H 1.09003 * 117.49910 * 252.51291 * 22 21 9 38 38 H 1.09000 * 117.51860 * 107.48363 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8901 2.3966 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.1154 -3.7600 -0.0665 11 7 2.5251 -4.0007 -1.4565 12 6 1.4243 -4.6210 -2.2358 13 6 2.1594 -5.2602 -3.4402 14 6 3.4649 -5.7902 -2.8083 15 1 3.4301 -6.8608 -2.6064 16 6 4.6751 -5.3783 -3.7081 17 7 5.7159 -4.9247 -2.7500 18 6 4.9611 -4.1545 -1.7292 19 6 3.6558 -4.9518 -1.5186 20 1 3.7044 -5.5804 -0.6295 21 6 -0.0403 -2.5699 0.8167 22 6 -0.1032 -2.5330 -0.7115 23 1 -0.4851 0.8400 0.0004 24 1 3.0007 -3.6266 0.5554 25 1 1.5418 -4.6129 0.2962 26 1 0.9174 -5.3842 -1.6453 27 1 0.7179 -3.8629 -2.5745 28 1 2.3762 -4.5108 -4.2015 29 1 1.5754 -6.0783 -3.8619 30 1 4.3979 -4.5667 -4.3808 31 1 5.0293 -6.2391 -4.2750 32 1 6.1900 -5.7112 -2.3320 33 1 4.7387 -3.1530 -2.0973 34 1 5.5261 -4.0992 -0.7988 35 1 -0.2743 -3.5146 1.3075 36 1 -0.3450 -1.6724 1.3550 37 1 -0.4494 -1.6111 -1.1789 38 1 -0.3783 -3.4534 -1.2266 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:25 Heat of formation + Delta-G solvation = 30.816485 kcal Electronic energy + Delta-G solvation = -17658.282162 eV Core-core repulsion = 15114.853259 eV Total energy + Delta-G solvation = -2543.428903 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99447 -38.58316 -36.09512 -33.66720 -32.64792 -29.21815 -28.68751 -27.61121 -25.69539 -23.03739 -22.62503 -21.95008 -20.84725 -20.30805 -18.18682 -17.59285 -16.88311 -16.34319 -15.99564 -15.63555 -15.33515 -14.64062 -14.37273 -14.02705 -13.61285 -13.45407 -13.00421 -12.93481 -12.81115 -12.58821 -12.35073 -12.29449 -11.95172 -11.93957 -11.85733 -11.56724 -11.38904 -11.27713 -10.83758 -10.21804 -10.01351 -9.66429 -9.08981 -7.96893 -6.07094 1.39882 1.42915 1.53968 2.44824 2.94569 3.19076 3.38168 3.49148 3.81521 4.01834 4.12052 4.25681 4.33174 4.38388 4.41563 4.48287 4.55427 4.65839 4.72598 4.76836 4.81755 4.87595 5.00980 5.07858 5.15480 5.23863 5.25090 5.30107 5.35155 5.47354 5.65502 5.66390 5.95418 6.21179 6.22877 6.36832 6.52617 6.54302 6.94849 7.49002 8.96534 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027884 B = 0.007984 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.905613 B = 3506.206569 C = 4066.526078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.009 3.991 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.475 4.475 8 H 0.051 0.949 9 C 0.022 3.978 10 C 0.104 3.896 11 N -0.506 5.506 12 C 0.035 3.965 13 C -0.107 4.107 14 C -0.124 4.124 15 H 0.104 0.896 16 C 0.054 3.946 17 N -0.673 5.673 18 C 0.059 3.941 19 C 0.027 3.973 20 H 0.058 0.942 21 C -0.197 4.197 22 C -0.179 4.179 23 H 0.255 0.745 24 H 0.058 0.942 25 H 0.021 0.979 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.344 0.656 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 -12.912 -5.551 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.189 4.189 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.512 4.512 8 H 0.070 0.930 9 C 0.021 3.979 10 C -0.024 4.024 11 N -0.230 5.230 12 C -0.093 4.093 13 C -0.145 4.145 14 C -0.145 4.145 15 H 0.122 0.878 16 C -0.076 4.076 17 N -0.299 5.299 18 C -0.071 4.071 19 C -0.083 4.083 20 H 0.076 0.924 21 C -0.235 4.235 22 C -0.217 4.217 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.160 0.840 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.914 -11.680 -6.155 14.904 hybrid contribution -0.902 -0.108 1.279 1.569 sum 6.012 -11.788 -4.876 14.103 Atomic orbital electron populations 1.70168 1.06740 1.26098 1.51282 1.25692 0.95755 1.02080 0.95384 0.85566 0.79094 0.80059 0.77256 1.19377 1.21073 1.20846 1.20851 0.92446 0.90191 1.47751 0.93041 1.18992 0.85935 0.93120 0.99841 1.21606 0.97386 0.94513 0.88907 1.64666 1.05833 1.40844 1.11638 1.23401 0.94351 0.96552 0.94988 1.22505 0.95371 1.00069 0.96547 1.23676 0.97019 0.99470 0.94304 0.87829 1.23472 0.89053 1.00165 0.94885 1.63259 1.25408 1.25923 1.15333 1.22864 0.91339 0.98002 0.94906 1.23920 0.93628 0.92865 0.97917 0.92366 1.22716 1.07417 0.98797 0.94587 1.22762 1.05474 0.99613 0.93846 0.93548 0.92309 0.96044 0.94526 0.91421 0.91169 0.89133 0.91132 0.88636 0.83952 0.91763 0.91179 0.92085 0.90805 0.89988 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.10 8.60 21.45 0.18 -51.92 16 2 C 0.01 0.50 5.28 84.66 0.45 0.95 16 3 Si 0.95 44.86 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 7 C -0.47 -26.57 9.19 25.60 0.24 -26.33 16 8 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 9 C 0.02 1.10 2.27 -52.93 -0.12 0.98 16 10 C 0.10 4.32 4.80 86.31 0.41 4.74 16 11 N -0.51 -18.74 4.65 -853.63 -3.97 -22.71 16 12 C 0.03 1.15 5.08 86.65 0.44 1.59 16 13 C -0.11 -2.65 6.62 31.73 0.21 -2.44 16 14 C -0.12 -2.81 4.13 -8.47 -0.03 -2.84 16 15 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 16 C 0.05 1.15 7.06 87.14 0.62 1.77 16 17 N -0.67 -16.03 7.62 -497.37 -3.79 -19.82 16 18 C 0.06 1.75 7.16 86.47 0.62 2.37 16 19 C 0.03 0.79 3.34 45.89 0.15 0.94 16 20 H 0.06 1.64 7.83 -2.39 -0.02 1.62 16 21 C -0.20 -9.97 9.32 30.59 0.29 -9.68 16 22 C -0.18 -9.02 8.20 30.59 0.25 -8.76 16 23 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 24 H 0.06 2.45 7.97 -2.38 -0.02 2.43 16 25 H 0.02 0.84 7.49 -2.39 -0.02 0.83 16 26 H 0.04 1.17 7.73 -2.39 -0.02 1.15 16 27 H 0.07 2.56 6.08 -2.38 -0.01 2.55 16 28 H 0.07 1.85 7.23 -2.39 -0.02 1.83 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.72 7.27 -2.39 -0.02 1.71 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.34 6.52 8.92 -89.70 -0.80 5.72 16 33 H 0.06 2.36 7.96 -2.39 -0.02 2.34 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 2.76 8.08 -2.39 -0.02 2.74 16 36 H 0.07 4.18 6.52 -2.39 -0.02 4.17 16 37 H 0.08 4.70 6.05 -2.39 -0.01 4.68 16 38 H 0.07 2.92 5.78 -2.39 -0.01 2.91 16 Total: -1.00 -61.09 287.79 -1.79 -62.89 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.24 Total: 21.40 kcal Atomic # 6 Polarization: -40.25 SS G_CDS: 3.52 Total: -36.73 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -7.58 Total: -94.45 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -61.09 -1.79 -62.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.706 kcal (2) G-P(sol) polarization free energy of solvation -61.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds