Wall clock time and date at job start Sun Mar 29 2020 21:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48499 * 109.47048 * 264.97857 * 3 2 1 5 5 H 1.48495 * 109.47055 * 24.98077 * 3 2 1 6 6 H 1.48501 * 109.46759 * 144.98005 * 3 2 1 7 7 C 1.37878 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99585 * 348.20928 * 7 2 1 9 9 C 1.50701 * 120.00058 * 167.93828 * 7 2 1 10 10 C 1.53001 * 115.54658 * 298.18611 * 9 7 2 11 11 N 1.46900 * 109.47423 * 294.48144 * 10 9 7 12 12 C 1.46899 * 111.00249 * 186.25283 * 11 10 9 13 13 C 1.53893 * 113.58652 * 250.37685 * 12 11 10 14 14 C 1.53264 * 86.87887 * 220.42712 * 13 12 11 15 15 C 1.52460 * 128.58204 * 165.11293 * 14 13 12 16 16 C 1.52454 * 128.58115 * 245.05353 * 14 13 12 17 17 H 1.09001 * 117.51092 * 134.95319 * 16 14 13 18 18 N 1.46899 * 117.51527 * 349.85101 * 16 14 13 19 19 C 1.53253 * 87.69200 * 25.08384 * 14 13 12 20 20 C 1.52998 * 117.50022 * 152.48080 * 9 7 2 21 21 C 1.52996 * 117.50021 * 83.85785 * 9 7 2 22 22 H 0.97003 * 119.99915 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47347 * 54.48703 * 10 9 7 24 24 H 1.09004 * 109.47083 * 174.48541 * 10 9 7 25 25 H 1.00905 * 110.99698 * 310.20801 * 11 10 9 26 26 H 1.08995 * 112.82900 * 21.59022 * 12 11 10 27 27 H 1.08997 * 113.64312 * 334.92049 * 13 12 11 28 28 H 1.08995 * 113.64705 * 105.93061 * 13 12 11 29 29 H 1.09000 * 117.51144 * 225.04530 * 15 14 13 30 30 H 1.09000 * 117.50975 * 10.14807 * 15 14 13 31 31 H 1.00900 * 111.00441 * 179.97438 * 18 16 14 32 32 H 1.00894 * 111.00243 * 303.95432 * 18 16 14 33 33 H 1.09007 * 113.64536 * 220.41957 * 19 14 13 34 34 H 1.08998 * 113.72976 * 89.43127 * 19 14 13 35 35 H 1.09002 * 117.49743 * 359.97438 * 20 9 7 36 36 H 1.08999 * 117.50096 * 145.01832 * 20 9 7 37 37 H 1.09000 * 117.49926 * 214.97928 * 21 9 7 38 38 H 1.08999 * 117.49764 * 0.02562 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6028 1.9851 -1.3947 5 1 1.3976 2.6809 0.5913 6 1 3.4896 1.4730 0.8035 7 6 2.0045 -1.1941 -0.0005 8 1 1.4815 -2.1196 0.1902 9 6 3.4866 -1.2084 -0.2733 10 6 3.9091 -0.6928 -1.6504 11 7 3.3973 -1.5961 -2.6897 12 6 3.9066 -1.2168 -4.0144 13 6 2.8312 -0.6207 -4.9399 14 6 3.4756 -1.4299 -6.0709 15 6 2.9107 -1.7539 -7.4494 16 6 4.1880 -0.9197 -7.3185 17 1 5.1302 -1.3956 -7.5903 18 7 4.0941 0.5162 -7.6142 19 6 3.9961 -2.3949 -5.0002 20 6 4.3063 -2.3468 0.3373 21 6 4.4242 -0.9303 0.9034 22 1 -0.4850 0.8401 0.0004 23 1 3.5020 0.3065 -1.8049 24 1 4.9970 -0.6544 -1.7060 25 1 3.6227 -2.5564 -2.4770 26 1 4.8179 -0.6212 -3.9624 27 1 1.8183 -0.9405 -4.6958 28 1 2.9162 0.4580 -5.0709 29 1 3.0128 -2.7784 -7.8073 30 1 2.0009 -1.2371 -7.7549 31 1 4.5990 0.7455 -8.4572 32 1 3.1310 0.8100 -7.6780 33 1 5.0149 -2.7385 -5.1794 34 1 3.3084 -3.2092 -4.7720 35 1 3.7737 -3.0852 0.9367 36 1 5.1468 -2.7288 -0.2421 37 1 5.3422 -0.3803 0.6963 38 1 3.9690 -0.7374 1.8748 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047780.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:34 Heat of formation + Delta-G solvation = 78.786403 kcal Electronic energy + Delta-G solvation = -16892.260700 eV Core-core repulsion = 14350.911928 eV Total energy + Delta-G solvation = -2541.348772 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.58362 -37.22513 -35.31455 -32.16134 -31.95799 -29.86407 -26.09433 -25.44629 -24.14891 -21.71145 -21.58313 -20.74410 -18.91544 -18.08808 -16.42312 -16.25824 -15.36076 -15.17930 -14.78360 -14.27505 -14.04201 -13.33896 -13.11909 -12.74932 -12.48647 -12.37196 -12.01043 -11.81309 -11.52845 -11.10087 -10.95285 -10.83173 -10.48465 -10.31883 -10.05470 -9.98097 -9.55694 -9.26121 -9.02154 -8.54262 -8.50671 -8.25166 -7.54707 -5.96620 -3.91362 3.38455 3.47201 3.53609 3.73599 4.17448 4.55531 4.63497 4.66338 4.85858 4.94467 5.00826 5.22949 5.29092 5.41492 5.60187 5.65246 5.73518 5.85275 5.91275 5.96295 6.06447 6.13822 6.26176 6.29361 6.42184 6.51593 6.57801 6.65022 6.75631 6.82589 6.94156 7.18882 7.19968 7.25533 7.85773 7.96729 8.18804 8.65598 9.07215 9.69461 11.16066 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.026940 B = 0.006720 C = 0.006144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.087663 B = 4165.680121 C = 4555.968318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.083 3.917 3 Si 0.868 3.132 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.257 1.257 7 C -0.465 4.465 8 H 0.073 0.927 9 C 0.004 3.996 10 C 0.094 3.906 11 N -0.651 5.651 12 C 0.067 3.933 13 C -0.081 4.081 14 C -0.148 4.148 15 C -0.205 4.205 16 C 0.057 3.943 17 H 0.114 0.886 18 N -0.815 5.815 19 C -0.100 4.100 20 C -0.187 4.187 21 C -0.199 4.199 22 H 0.262 0.738 23 H 0.067 0.933 24 H 0.003 0.997 25 H 0.337 0.663 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.343 0.657 32 H 0.345 0.655 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.072 -1.960 -13.410 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.119 4.119 3 Si 0.697 3.303 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.181 1.181 7 C -0.502 4.502 8 H 0.091 0.909 9 C 0.003 3.997 10 C -0.035 4.035 11 N -0.281 5.281 12 C -0.043 4.043 13 C -0.119 4.119 14 C -0.149 4.149 15 C -0.245 4.245 16 C -0.056 4.056 17 H 0.132 0.868 18 N -0.342 5.342 19 C -0.138 4.138 20 C -0.225 4.225 21 C -0.237 4.237 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.021 0.979 25 H 0.156 0.844 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.697 -1.365 -12.776 15.516 hybrid contribution 0.822 0.350 -0.821 1.213 sum 9.519 -1.014 -13.598 16.629 Atomic orbital electron populations 1.69941 1.06364 1.26780 1.50314 1.24819 0.94326 0.98734 0.94031 0.87062 0.80896 0.83897 0.78493 1.20278 1.22310 1.18107 1.20101 0.88062 0.94629 1.47423 0.90858 1.19478 0.94079 0.97424 0.88697 1.21797 0.93300 0.96969 0.91465 1.60351 1.61894 1.06148 0.99724 1.22827 0.96225 0.96428 0.88866 1.22519 0.99372 0.98596 0.91414 1.22353 1.03023 1.01329 0.88240 1.23548 0.98292 1.01504 1.01108 1.22142 0.95563 0.87484 1.00401 0.86782 1.58313 1.19282 1.14033 1.42606 1.22771 1.00334 0.96645 0.94084 1.22741 1.02366 0.91878 1.05468 1.23068 1.01467 0.98385 1.00775 0.92869 0.91498 0.97863 0.84404 0.91716 0.88887 0.91762 0.88940 0.88990 0.84359 0.84139 0.92129 0.88940 0.89813 0.91479 0.91651 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 2 C 0.08 2.41 5.44 -17.82 -0.10 2.31 16 3 Si 0.87 22.06 25.29 -169.99 -4.30 17.76 16 4 H -0.28 -6.94 6.48 56.52 0.37 -6.58 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.26 -6.21 6.08 56.52 0.34 -5.87 16 7 C -0.47 -13.09 9.29 -34.44 -0.32 -13.41 16 8 H 0.07 2.26 8.06 -52.48 -0.42 1.84 16 9 C 0.00 0.10 0.90 -155.66 -0.14 -0.04 16 10 C 0.09 2.04 5.07 -3.82 -0.02 2.02 16 11 N -0.65 -12.94 6.52 -105.75 -0.69 -13.63 16 12 C 0.07 1.13 4.16 -66.79 -0.28 0.85 16 13 C -0.08 -1.33 7.88 -26.13 -0.21 -1.54 16 14 C -0.15 -1.97 3.02 -154.80 -0.47 -2.43 16 15 C -0.20 -2.26 10.23 -26.95 -0.28 -2.54 16 16 C 0.06 0.63 7.23 -67.93 -0.49 0.13 16 17 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 18 N -0.81 -8.45 9.88 -4.85 -0.05 -8.50 16 19 C -0.10 -1.37 7.65 -26.14 -0.20 -1.57 16 20 C -0.19 -3.82 9.96 -26.73 -0.27 -4.09 16 21 C -0.20 -4.29 8.23 -26.73 -0.22 -4.51 16 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.07 1.61 4.79 -51.93 -0.25 1.36 16 24 H 0.00 0.07 7.95 -51.93 -0.41 -0.35 16 25 H 0.34 6.29 8.43 -39.29 -0.33 5.95 16 26 H 0.06 1.11 7.76 -51.93 -0.40 0.71 16 27 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 31 H 0.34 2.69 9.08 -39.29 -0.36 2.33 16 32 H 0.34 3.41 8.78 -39.29 -0.35 3.06 16 33 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -30.53 307.05 -9.01 -39.54 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.40 Total: 11.95 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -2.98 Total: -24.80 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.04 Total: -49.08 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.30 Total: 17.76 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.53 -9.01 -39.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047780.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.330 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds