Wall clock time and date at job start Sun Mar 29 2020 21:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48499 * 109.47048 * 264.97857 * 3 2 1 5 5 H 1.48495 * 109.47055 * 24.98077 * 3 2 1 6 6 H 1.48501 * 109.46759 * 144.98005 * 3 2 1 7 7 C 1.37878 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99585 * 348.20928 * 7 2 1 9 9 C 1.50701 * 120.00058 * 167.93828 * 7 2 1 10 10 C 1.53001 * 115.54658 * 298.18611 * 9 7 2 11 11 N 1.46900 * 109.47423 * 294.48144 * 10 9 7 12 12 C 1.46899 * 111.00249 * 186.25283 * 11 10 9 13 13 C 1.53893 * 113.58652 * 250.37685 * 12 11 10 14 14 C 1.53264 * 86.87887 * 220.42712 * 13 12 11 15 15 C 1.52460 * 128.58204 * 165.11293 * 14 13 12 16 16 C 1.52454 * 128.58115 * 245.05353 * 14 13 12 17 17 H 1.09001 * 117.51092 * 134.95319 * 16 14 13 18 18 N 1.46899 * 117.51527 * 349.85101 * 16 14 13 19 19 C 1.53253 * 87.69200 * 25.08384 * 14 13 12 20 20 C 1.52998 * 117.50022 * 152.48080 * 9 7 2 21 21 C 1.52996 * 117.50021 * 83.85785 * 9 7 2 22 22 H 0.97003 * 119.99915 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47347 * 54.48703 * 10 9 7 24 24 H 1.09004 * 109.47083 * 174.48541 * 10 9 7 25 25 H 1.00905 * 110.99698 * 310.20801 * 11 10 9 26 26 H 1.08995 * 112.82900 * 21.59022 * 12 11 10 27 27 H 1.08997 * 113.64312 * 334.92049 * 13 12 11 28 28 H 1.08995 * 113.64705 * 105.93061 * 13 12 11 29 29 H 1.09000 * 117.51144 * 225.04530 * 15 14 13 30 30 H 1.09000 * 117.50975 * 10.14807 * 15 14 13 31 31 H 1.00900 * 111.00441 * 179.97438 * 18 16 14 32 32 H 1.00894 * 111.00243 * 303.95432 * 18 16 14 33 33 H 1.09007 * 113.64536 * 220.41957 * 19 14 13 34 34 H 1.08998 * 113.72976 * 89.43127 * 19 14 13 35 35 H 1.09002 * 117.49743 * 359.97438 * 20 9 7 36 36 H 1.08999 * 117.50096 * 145.01832 * 20 9 7 37 37 H 1.09000 * 117.49926 * 214.97928 * 21 9 7 38 38 H 1.08999 * 117.49764 * 0.02562 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6028 1.9851 -1.3947 5 1 1.3976 2.6809 0.5913 6 1 3.4896 1.4730 0.8035 7 6 2.0045 -1.1941 -0.0005 8 1 1.4815 -2.1196 0.1902 9 6 3.4866 -1.2084 -0.2733 10 6 3.9091 -0.6928 -1.6504 11 7 3.3973 -1.5961 -2.6897 12 6 3.9066 -1.2168 -4.0144 13 6 2.8312 -0.6207 -4.9399 14 6 3.4756 -1.4299 -6.0709 15 6 2.9107 -1.7539 -7.4494 16 6 4.1880 -0.9197 -7.3185 17 1 5.1302 -1.3956 -7.5903 18 7 4.0941 0.5162 -7.6142 19 6 3.9961 -2.3949 -5.0002 20 6 4.3063 -2.3468 0.3373 21 6 4.4242 -0.9303 0.9034 22 1 -0.4850 0.8401 0.0004 23 1 3.5020 0.3065 -1.8049 24 1 4.9970 -0.6544 -1.7060 25 1 3.6227 -2.5564 -2.4770 26 1 4.8179 -0.6212 -3.9624 27 1 1.8183 -0.9405 -4.6958 28 1 2.9162 0.4580 -5.0709 29 1 3.0128 -2.7784 -7.8073 30 1 2.0009 -1.2371 -7.7549 31 1 4.5990 0.7455 -8.4572 32 1 3.1310 0.8100 -7.6780 33 1 5.0149 -2.7385 -5.1794 34 1 3.3084 -3.2092 -4.7720 35 1 3.7737 -3.0852 0.9367 36 1 5.1468 -2.7288 -0.2421 37 1 5.3422 -0.3803 0.6963 38 1 3.9690 -0.7374 1.8748 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047780.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:34 Heat of formation + Delta-G solvation = 56.310831 kcal Electronic energy + Delta-G solvation = -16893.235314 eV Core-core repulsion = 14350.911928 eV Total energy + Delta-G solvation = -2542.323386 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69634 -38.90439 -36.51301 -34.18587 -33.44895 -30.86095 -28.06615 -26.71452 -25.87306 -23.22710 -22.56552 -22.08344 -20.81778 -19.19986 -18.28924 -17.26006 -17.03978 -16.41586 -16.31974 -15.73027 -15.31189 -14.88536 -14.79251 -14.45132 -14.03199 -13.66165 -13.28963 -13.07799 -12.89940 -12.87995 -12.27595 -12.23863 -12.15254 -12.11044 -11.86432 -11.27615 -11.14901 -10.93670 -10.50623 -10.47692 -10.23538 -9.35576 -9.05379 -8.21558 -6.19054 1.35790 1.39164 1.51017 2.42822 2.79914 3.00542 3.26932 3.33219 3.57192 3.66306 3.83158 3.95989 4.04649 4.07393 4.25282 4.34547 4.43161 4.51567 4.60700 4.72668 4.83673 4.88237 4.90816 4.92612 4.94238 5.06920 5.12652 5.14168 5.30721 5.44086 5.51623 5.53589 5.79858 6.15894 6.36489 6.45158 6.57781 6.73591 6.82723 7.44843 8.95081 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.026940 B = 0.006720 C = 0.006144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.087663 B = 4165.680121 C = 4555.968318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.026 3.974 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.301 1.301 6 H -0.232 1.232 7 C -0.460 4.460 8 H 0.027 0.973 9 C -0.027 4.027 10 C 0.103 3.897 11 N -0.672 5.672 12 C 0.062 3.938 13 C -0.088 4.088 14 C -0.164 4.164 15 C -0.194 4.194 16 C 0.072 3.928 17 H 0.135 0.865 18 N -0.826 5.826 19 C -0.085 4.085 20 C -0.164 4.164 21 C -0.191 4.191 22 H 0.261 0.739 23 H 0.041 0.959 24 H 0.030 0.970 25 H 0.343 0.657 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.359 0.641 32 H 0.346 0.654 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.199 -2.044 -14.851 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.171 4.171 3 Si 0.755 3.245 4 H -0.200 1.200 5 H -0.228 1.228 6 H -0.155 1.155 7 C -0.498 4.498 8 H 0.045 0.955 9 C -0.028 4.028 10 C -0.026 4.026 11 N -0.303 5.303 12 C -0.048 4.048 13 C -0.127 4.127 14 C -0.166 4.166 15 C -0.234 4.234 16 C -0.041 4.041 17 H 0.152 0.848 18 N -0.355 5.355 19 C -0.123 4.123 20 C -0.201 4.201 21 C -0.230 4.230 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.162 0.838 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.174 0.826 32 H 0.160 0.840 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.859 -1.460 -14.227 18.579 hybrid contribution -0.206 0.299 -0.379 0.525 sum 11.653 -1.161 -14.606 18.721 Atomic orbital electron populations 1.70091 1.08278 1.27523 1.53040 1.25611 0.94927 1.02427 0.94144 0.86092 0.80314 0.79322 0.78811 1.20009 1.22795 1.15461 1.20272 0.90874 0.92631 1.45986 0.95497 1.19384 0.91618 1.01242 0.90537 1.21567 0.94549 0.95808 0.90685 1.60269 1.62993 1.06293 1.00763 1.22917 0.95974 0.98247 0.87689 1.22401 0.98105 0.98196 0.93958 1.22264 1.04656 1.01005 0.88634 1.23621 0.98577 1.02518 0.98681 1.22260 0.96282 0.87864 0.97647 0.84773 1.58266 1.19715 1.13771 1.43768 1.22613 1.01541 0.95407 0.92700 1.22788 1.02041 0.91084 1.04203 1.23081 1.01397 0.99495 0.98983 0.93054 0.94124 0.95214 0.83794 0.91562 0.91857 0.93072 0.87357 0.89033 0.82566 0.84010 0.89829 0.89473 0.90517 0.88017 0.88867 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.23 13.96 21.45 0.30 -60.93 16 2 C 0.03 1.54 5.44 84.65 0.46 2.00 16 3 Si 0.93 46.12 25.29 68.60 1.74 47.86 16 4 H -0.27 -13.40 6.48 99.48 0.64 -12.75 16 5 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 6 H -0.23 -10.44 6.08 99.48 0.61 -9.83 16 7 C -0.46 -26.59 9.29 25.60 0.24 -26.35 16 8 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 9 C -0.03 -1.22 0.90 -52.93 -0.05 -1.27 16 10 C 0.10 4.33 5.07 86.30 0.44 4.76 16 11 N -0.67 -26.33 6.52 -488.49 -3.19 -29.51 16 12 C 0.06 2.00 4.16 45.51 0.19 2.19 16 13 C -0.09 -2.92 7.88 30.98 0.24 -2.68 16 14 C -0.16 -4.07 3.02 -52.37 -0.16 -4.22 16 15 C -0.19 -3.81 10.23 30.46 0.31 -3.50 16 16 C 0.07 1.38 7.23 44.77 0.32 1.70 16 17 H 0.13 2.07 8.14 -2.39 -0.02 2.06 16 18 N -0.83 -15.20 9.88 -169.27 -1.67 -16.87 16 19 C -0.08 -2.14 7.65 30.98 0.24 -1.90 16 20 C -0.16 -6.26 9.96 30.59 0.30 -5.96 16 21 C -0.19 -7.70 8.23 30.59 0.25 -7.45 16 22 H 0.26 15.93 8.31 -92.71 -0.77 15.15 16 23 H 0.04 1.91 4.79 -2.39 -0.01 1.90 16 24 H 0.03 1.09 7.95 -2.39 -0.02 1.07 16 25 H 0.34 12.42 8.43 -89.69 -0.76 11.67 16 26 H 0.07 2.14 7.76 -2.39 -0.02 2.12 16 27 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 31 H 0.36 4.63 9.08 -89.69 -0.81 3.82 16 32 H 0.35 6.30 8.78 -89.70 -0.79 5.51 16 33 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.09 3.26 8.14 -2.39 -0.02 3.25 16 38 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -68.20 307.05 -1.49 -69.69 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -1.46 Total: 32.44 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 2.79 Total: -42.68 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -4.56 Total: -107.31 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.74 Total: 47.86 kcal Total: -68.20 -1.49 -69.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047780.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.003 kcal (2) G-P(sol) polarization free energy of solvation -68.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds