Wall clock time and date at job start Sun Mar 29 2020 21:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86789 * 120.00125 * 2 1 4 4 H 1.48506 * 109.46906 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47345 * 299.99756 * 3 2 1 6 6 H 1.48500 * 109.47328 * 59.99967 * 3 2 1 7 7 C 1.37880 * 119.99384 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99644 * 186.05376 * 7 2 1 9 9 C 1.50692 * 120.00222 * 5.77633 * 7 2 1 10 10 C 1.53000 * 115.55509 * 279.24493 * 9 7 2 11 11 N 1.46896 * 109.46994 * 294.90556 * 10 9 7 12 12 C 1.46903 * 111.00166 * 185.33433 * 11 10 9 13 13 C 1.53891 * 113.58995 * 252.66271 * 12 11 10 14 14 C 1.53260 * 86.88153 * 220.42751 * 13 12 11 15 15 C 1.52457 * 128.58140 * 245.05732 * 14 13 12 16 16 C 1.52460 * 128.58300 * 165.11465 * 14 13 12 17 17 H 1.09005 * 117.50993 * 225.04501 * 16 14 13 18 18 N 1.46900 * 117.51253 * 10.15074 * 16 14 13 19 19 C 1.53258 * 87.69394 * 25.08098 * 14 13 12 20 20 C 1.53003 * 117.49877 * 133.53455 * 9 7 2 21 21 C 1.52996 * 60.00148 * 252.50974 * 20 9 7 22 22 H 0.97007 * 119.99788 * 5.02414 * 1 2 3 23 23 H 1.09008 * 109.46934 * 54.89734 * 10 9 7 24 24 H 1.08996 * 109.47303 * 174.89987 * 10 9 7 25 25 H 1.00902 * 111.00595 * 61.38385 * 11 10 9 26 26 H 1.09004 * 112.82704 * 23.88192 * 12 11 10 27 27 H 1.08995 * 113.64652 * 334.92216 * 13 12 11 28 28 H 1.08997 * 113.64405 * 105.92764 * 13 12 11 29 29 H 1.09005 * 117.51565 * 349.84947 * 15 14 13 30 30 H 1.08998 * 117.51589 * 134.90722 * 15 14 13 31 31 H 1.00906 * 110.99630 * 180.02562 * 18 16 14 32 32 H 1.00896 * 110.99574 * 303.95013 * 18 16 14 33 33 H 1.08997 * 113.64532 * 220.41659 * 19 14 13 34 34 H 1.09004 * 113.64298 * 89.41483 * 19 14 13 35 35 H 1.09001 * 117.49753 * 0.02562 * 20 9 7 36 36 H 1.08997 * 117.49629 * 145.01576 * 20 9 7 37 37 H 1.08994 * 117.50023 * 252.50883 * 21 20 9 38 38 H 1.09003 * 117.49561 * 107.49047 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0799 -1.1968 0.0992 9 6 1.2566 -2.4959 -0.1302 10 6 0.6188 -3.0228 1.1568 11 7 1.6726 -3.3606 2.1228 12 6 1.1047 -3.9881 3.3235 13 6 1.1178 -3.0736 4.5612 14 6 1.5193 -4.3128 5.3688 15 6 0.7373 -5.0276 6.4650 16 6 2.0901 -4.3836 6.7808 17 1 2.9374 -5.0485 6.9486 18 7 2.0847 -3.1495 7.5776 19 6 2.0978 -4.8932 4.0737 20 6 1.7993 -3.5257 -1.1232 21 6 0.5161 -2.7564 -1.4435 22 1 -0.4850 0.8369 -0.0736 23 1 -0.0305 -2.2566 1.5806 24 1 0.0317 -3.9135 0.9332 25 1 2.2170 -2.5459 2.3638 26 1 0.1394 -4.4594 3.1381 27 1 1.8894 -2.3045 4.5282 28 1 0.1362 -2.6796 4.8240 29 1 -0.1565 -4.5355 6.8487 30 1 0.6942 -6.1160 6.4249 31 1 2.4832 -3.3071 8.4911 32 1 2.5679 -2.4061 7.0960 33 1 1.9017 -5.9577 3.9459 34 1 3.1421 -4.6304 3.9050 35 1 2.6974 -3.2618 -1.6815 36 1 1.7022 -4.5788 -0.8595 37 1 -0.4251 -3.3034 -1.3907 38 1 0.5700 -1.9862 -2.2130 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:35 Heat of formation + Delta-G solvation = 52.285272 kcal Electronic energy + Delta-G solvation = -16735.698813 eV Core-core repulsion = 14193.200866 eV Total energy + Delta-G solvation = -2542.497947 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67605 -38.57943 -36.40437 -33.99374 -33.31833 -30.94852 -27.67188 -26.60186 -25.96536 -22.98917 -22.71102 -21.66029 -20.95493 -19.24574 -17.91723 -17.00279 -16.61145 -16.45650 -16.34764 -15.76406 -15.63774 -15.30410 -14.48514 -13.81740 -13.61713 -13.49499 -13.10952 -13.08313 -12.98388 -12.84303 -12.51602 -12.38913 -12.27529 -11.98760 -11.49192 -11.33219 -11.10914 -10.66756 -10.46189 -10.36049 -9.91411 -9.58751 -8.99222 -8.08401 -6.18792 1.39513 1.43499 1.53425 2.44177 2.78614 3.18958 3.21441 3.41094 3.69903 3.73755 3.82602 3.94715 4.13694 4.29474 4.39176 4.49583 4.66159 4.67996 4.77352 4.86031 4.88537 4.93047 4.99901 5.04400 5.07306 5.12393 5.19576 5.29301 5.38025 5.40947 5.67476 5.69102 5.83559 6.23526 6.44180 6.51536 6.57039 6.69703 6.91248 7.49495 8.99795 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.025057 B = 0.006259 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.169396 B = 4472.304661 C = 5202.186850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.497 4.497 8 H 0.052 0.948 9 C 0.024 3.976 10 C 0.121 3.879 11 N -0.667 5.667 12 C 0.065 3.935 13 C -0.117 4.117 14 C -0.154 4.154 15 C -0.136 4.136 16 C 0.032 3.968 17 H 0.100 0.900 18 N -0.829 5.829 19 C -0.075 4.075 20 C -0.176 4.176 21 C -0.173 4.173 22 H 0.257 0.743 23 H 0.004 0.996 24 H 0.043 0.957 25 H 0.341 0.659 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.355 0.645 32 H 0.346 0.654 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -8.669 11.816 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.535 4.535 8 H 0.070 0.930 9 C 0.024 3.976 10 C -0.008 4.008 11 N -0.296 5.296 12 C -0.046 4.046 13 C -0.156 4.156 14 C -0.155 4.155 15 C -0.174 4.174 16 C -0.080 4.080 17 H 0.118 0.882 18 N -0.361 5.361 19 C -0.113 4.113 20 C -0.213 4.213 21 C -0.211 4.211 22 H 0.066 0.934 23 H 0.023 0.977 24 H 0.061 0.939 25 H 0.159 0.841 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.169 0.831 32 H 0.161 0.839 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.853 -9.165 11.496 14.976 hybrid contribution 0.613 1.943 0.110 2.040 sum 3.466 -7.222 11.606 14.102 Atomic orbital electron populations 1.70131 1.07046 1.27105 1.50378 1.25628 0.95429 1.01671 0.94714 0.85725 0.79398 0.80509 0.77326 1.19088 1.20975 1.21047 1.20720 0.92586 0.90201 1.50028 0.92970 1.18941 0.98025 0.93425 0.87252 1.21167 0.91703 0.95253 0.92697 1.60407 1.23652 1.33515 1.11996 1.22961 0.97708 0.96493 0.87445 1.23007 1.00405 0.95854 0.96366 1.22178 1.04979 0.99252 0.89093 1.23064 0.95547 0.99667 0.99080 1.22149 0.96780 0.94549 0.94559 0.88240 1.58258 1.64093 1.06885 1.06818 1.22513 0.98937 0.99037 0.90814 1.22806 0.96261 0.96435 1.05808 1.22491 0.94309 1.01980 1.02348 0.93356 0.97747 0.93856 0.84069 0.89808 0.90562 0.93212 0.89181 0.86967 0.83086 0.83937 0.90448 0.89735 0.90874 0.89633 0.91174 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.89 13.10 21.45 0.28 -51.61 16 2 C 0.03 1.38 5.42 84.66 0.46 1.84 16 3 Si 0.94 43.18 29.54 68.60 2.03 45.21 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.50 -26.73 8.31 25.60 0.21 -26.51 16 8 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 9 C 0.02 1.19 1.49 -52.93 -0.08 1.11 16 10 C 0.12 5.50 5.43 86.30 0.47 5.97 16 11 N -0.67 -26.01 6.59 -488.47 -3.22 -29.23 16 12 C 0.06 2.08 4.18 45.51 0.19 2.27 16 13 C -0.12 -3.54 7.70 30.98 0.24 -3.30 16 14 C -0.15 -3.76 3.02 -52.37 -0.16 -3.91 16 15 C -0.14 -2.87 10.46 30.45 0.32 -2.55 16 16 C 0.03 0.64 7.11 44.78 0.32 0.96 16 17 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 18 N -0.83 -16.13 9.82 -169.25 -1.66 -17.80 16 19 C -0.07 -1.93 7.90 30.98 0.24 -1.69 16 20 C -0.18 -7.70 9.96 30.59 0.30 -7.40 16 21 C -0.17 -8.26 9.66 30.59 0.30 -7.96 16 22 H 0.26 14.12 8.32 -92.70 -0.77 13.35 16 23 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 24 H 0.04 1.86 7.97 -2.39 -0.02 1.84 16 25 H 0.34 14.13 7.76 -89.69 -0.70 13.44 16 26 H 0.08 2.75 7.79 -2.39 -0.02 2.73 16 27 H 0.08 2.38 7.82 -2.39 -0.02 2.37 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.36 5.19 9.08 -89.69 -0.81 4.38 16 32 H 0.35 6.72 9.08 -89.70 -0.81 5.90 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 37 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -58.23 316.19 -1.03 -59.25 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -1.27 Total: 35.35 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 2.81 Total: -41.18 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -4.60 Total: -98.64 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -58.23 -1.03 -59.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.539 kcal (2) G-P(sol) polarization free energy of solvation -58.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds