Wall clock time and date at job start Sun Mar 29 2020 22:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86797 * 120.00329 * 2 1 4 4 H 1.48500 * 109.47405 * 270.00271 * 3 2 1 5 5 H 1.48506 * 109.46756 * 30.00144 * 3 2 1 6 6 H 1.48498 * 109.47480 * 150.00171 * 3 2 1 7 7 C 1.40047 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99758 * 359.97438 * 7 2 1 10 10 O 1.21688 * 119.99984 * 359.97438 * 9 7 2 11 11 N 1.34783 * 119.99739 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99531 * 180.02562 * 11 9 7 13 13 C 1.53781 * 113.61225 * 155.00207 * 12 11 9 14 14 C 1.53786 * 87.17350 * 139.93836 * 13 12 11 15 15 Cl 1.80296 * 113.61508 * 89.15772 * 14 13 12 16 16 Cl 1.80306 * 113.61156 * 220.06247 * 14 13 12 17 17 C 1.53782 * 113.61191 * 252.49880 * 12 11 9 18 18 H 0.97001 * 119.99583 * 359.97438 * 1 2 3 19 19 H 0.96997 * 119.99692 * 0.02562 * 11 9 7 20 20 H 1.08996 * 112.85385 * 23.80181 * 12 11 9 21 21 H 1.09002 * 113.61445 * 254.52836 * 13 12 11 22 22 H 1.09002 * 113.61408 * 25.34566 * 13 12 11 23 23 H 1.08997 * 113.61668 * 334.56642 * 17 12 11 24 24 H 1.08998 * 113.61674 * 105.39151 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0464 -1.4000 5 1 1.4382 2.6526 0.7001 6 1 3.5384 1.4401 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4804 0.0004 11 7 1.9489 -3.6477 -0.0016 12 6 1.2163 -4.9164 -0.0022 13 6 2.0140 -6.0880 -0.5987 14 6 1.4287 -6.9593 0.5253 15 17 -0.1427 -7.7321 0.0961 16 17 2.6135 -8.1219 1.2292 17 6 1.2758 -5.6626 1.3412 18 1 -0.4849 0.8401 0.0004 19 1 2.9189 -3.6477 -0.0020 20 1 0.2087 -4.8232 -0.4070 21 1 1.6821 -6.3798 -1.5951 22 1 3.0944 -5.9589 -0.5334 23 1 2.1543 -5.4179 1.9381 24 1 0.3484 -5.6098 1.9115 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597533910.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:09 Heat of formation + Delta-G solvation = -63.619268 kcal Electronic energy + Delta-G solvation = -12622.983075 eV Core-core repulsion = 10008.517499 eV Total energy + Delta-G solvation = -2614.465576 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 237.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.58014 -38.61632 -36.94928 -36.80758 -34.65550 -33.38566 -28.56926 -27.07309 -25.28147 -21.86193 -20.95128 -19.09222 -17.72977 -17.37383 -16.75980 -15.87822 -15.39143 -15.04291 -14.38717 -14.17843 -13.82852 -13.75408 -13.00234 -12.79541 -12.60850 -12.41484 -12.27025 -12.12508 -12.01441 -11.85156 -11.58280 -11.27842 -10.91717 -9.85757 -9.49929 -8.27913 -6.84111 0.24568 1.12777 1.43097 1.43729 1.59192 2.26314 2.46114 2.84785 2.98593 3.19285 3.49138 3.87495 4.11867 4.43044 4.50503 4.65837 4.79660 5.02825 5.34383 5.89630 6.20697 6.27805 6.88901 7.54775 8.50165 8.68429 Molecular weight = 237.01amu Principal moments of inertia in cm(-1) A = 0.055079 B = 0.005681 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.239734 B = 4927.583021 C = 5265.852979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.248 1.248 7 C -0.571 4.571 8 H 0.090 0.910 9 C 0.539 3.461 10 O -0.629 6.629 11 N -0.737 5.737 12 C 0.131 3.869 13 C -0.121 4.121 14 C 0.079 3.921 15 Cl -0.123 7.123 16 Cl -0.130 7.130 17 C -0.140 4.140 18 H 0.274 0.726 19 H 0.400 0.600 20 H 0.084 0.916 21 H 0.104 0.896 22 H 0.133 0.867 23 H 0.120 0.880 24 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.257 -11.492 0.654 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.171 1.171 7 C -0.607 4.607 8 H 0.108 0.892 9 C 0.344 3.656 10 O -0.516 6.516 11 N -0.391 5.391 12 C 0.023 3.977 13 C -0.159 4.159 14 C 0.027 3.973 15 Cl -0.096 7.096 16 Cl -0.103 7.103 17 C -0.180 4.180 18 H 0.084 0.916 19 H 0.235 0.765 20 H 0.102 0.898 21 H 0.122 0.878 22 H 0.151 0.849 23 H 0.139 0.861 24 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.186 -11.560 0.670 13.128 hybrid contribution 0.227 0.405 0.088 0.472 sum 6.413 -11.156 0.759 12.890 Atomic orbital electron populations 1.70186 1.09509 1.28916 1.36468 1.26959 0.95493 1.04975 0.91281 0.85033 0.78807 0.75213 0.79339 1.18731 1.20091 1.17128 1.21440 0.94854 0.89961 1.54465 0.89168 1.18613 0.86850 0.84329 0.75824 1.90570 1.16239 1.87799 1.57012 1.45650 1.09165 1.03797 1.80465 1.21862 0.97119 0.83544 0.95152 1.24066 1.02965 0.90979 0.97911 1.27810 0.82620 0.86934 0.99917 1.98759 1.33212 1.83991 1.93683 1.98747 1.59658 1.65923 1.85975 1.24284 1.05088 0.89655 0.98954 0.91625 0.76503 0.89789 0.87791 0.84882 0.86145 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.33 11.83 21.84 0.26 -49.07 14 2 C 0.03 1.52 5.50 85.30 0.47 1.99 14 3 Si 1.00 39.75 29.56 68.60 2.03 41.77 14 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 14 5 H -0.28 -10.75 7.11 99.48 0.71 -10.04 14 6 H -0.25 -9.13 7.11 99.48 0.71 -8.42 14 7 C -0.57 -30.95 9.54 24.83 0.24 -30.72 14 8 H 0.09 4.33 7.85 -2.91 -0.02 4.30 14 9 C 0.54 29.73 7.75 86.36 0.67 30.40 14 10 O -0.63 -40.74 14.62 -4.31 -0.06 -40.81 14 11 N -0.74 -30.10 5.35 -444.31 -2.38 -32.47 14 12 C 0.13 4.53 4.05 45.52 0.18 4.71 14 13 C -0.12 -2.96 7.16 31.12 0.22 -2.73 14 14 C 0.08 1.98 2.08 31.18 0.06 2.04 14 15 Cl -0.12 -3.27 28.64 -2.72 -0.08 -3.35 14 16 Cl -0.13 -2.93 28.84 -2.72 -0.08 -3.01 14 17 C -0.14 -4.09 7.22 31.18 0.23 -3.87 14 18 H 0.27 14.94 8.29 -92.71 -0.77 14.17 14 19 H 0.40 13.55 8.71 -92.71 -0.81 12.75 14 20 H 0.08 3.51 7.46 -2.39 -0.02 3.49 14 21 H 0.10 2.37 8.14 -2.39 -0.02 2.35 14 22 H 0.13 2.67 8.11 -2.39 -0.02 2.65 14 23 H 0.12 3.22 8.14 -2.39 -0.02 3.20 14 24 H 0.08 2.53 8.14 -2.39 -0.02 2.51 14 Total: -1.00 -69.64 248.29 2.19 -67.45 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.43 Total: 17.66 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 2.07 Total: 1.83 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -2.12 Total: -81.54 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.06 Total: -40.81 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.77 kcal Atomic # 17 Polarization: -6.21 SS G_CDS: -0.16 Total: -6.36 kcal Total: -69.64 2.19 -67.45 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597533910.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.830 kcal (2) G-P(sol) polarization free energy of solvation -69.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds