Wall clock time and date at job start Sun Mar 29 2020 22:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86804 * 120.00362 * 2 1 4 4 H 1.48500 * 109.47096 * 270.00022 * 3 2 1 5 5 H 1.48503 * 109.46970 * 30.00226 * 3 2 1 6 6 H 1.48497 * 109.46971 * 150.00228 * 3 2 1 7 7 C 1.39074 * 119.99484 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99848 * 200.92342 * 7 2 1 9 9 N 1.36814 * 120.00329 * 20.92530 * 7 2 1 10 10 C 1.46502 * 119.99992 * 16.73993 * 9 7 2 11 11 C 1.50696 * 109.47304 * 263.84071 * 10 9 7 12 12 O 1.20824 * 119.99932 * 359.97438 * 11 10 9 13 13 O 1.34226 * 120.00068 * 179.97438 * 11 10 9 14 14 C 1.34780 * 120.00135 * 196.47058 * 9 7 2 15 15 O 1.21660 * 119.99958 * 359.97438 * 14 9 7 16 16 C 1.43194 * 119.99982 * 180.02562 * 14 9 7 17 17 C 5.83624 * 84.45391 * 189.20153 * 2 1 3 18 18 C 7.20826 * 80.19751 * 191.23769 * 2 1 3 19 19 C 1.53003 * 117.50083 * 273.72348 * 18 17 16 20 20 C 1.52997 * 117.49777 * 205.06206 * 18 17 16 21 21 H 0.97002 * 119.99399 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.46586 * 23.84166 * 10 9 7 23 23 H 1.09001 * 109.46810 * 143.83573 * 10 9 7 24 24 H 0.96700 * 117.00228 * 179.97438 * 13 11 10 25 25 H 1.09007 * 115.55535 * 59.39676 * 18 17 16 26 26 H 1.09001 * 117.49779 * 0.02562 * 19 18 17 27 27 H 1.08996 * 117.49731 * 145.02501 * 19 18 17 28 28 H 1.09003 * 117.50452 * 214.98254 * 20 18 17 29 29 H 1.08999 * 117.50137 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.4952 2.0464 -1.4001 5 1 1.4451 2.6527 0.7001 6 1 3.5452 1.4400 0.7000 7 6 2.0088 -1.2045 -0.0005 8 1 3.0354 -1.2355 0.3335 9 7 1.3924 -2.3500 -0.4242 10 6 0.1579 -2.2703 -1.2090 11 6 -1.0297 -2.4271 -0.2947 12 8 -0.8622 -2.5892 0.8908 13 8 -2.2737 -2.3865 -0.7973 14 6 1.9237 -3.5518 -0.1242 15 8 2.9518 -3.6179 0.5230 16 6 1.2788 -4.7507 -0.5681 17 6 0.7495 -5.7342 -0.9289 18 6 0.0863 -6.9668 -1.3842 19 6 -0.5081 -7.8857 -0.3149 20 6 0.7664 -8.2975 -1.0561 21 1 -0.4849 0.8401 0.0004 22 1 0.1068 -1.3028 -1.7084 23 1 0.1497 -3.0651 -1.9550 24 1 -3.0036 -2.4922 -0.1719 25 1 -0.4424 -6.8928 -2.3346 26 1 -0.4084 -7.5771 0.7257 27 1 -1.4275 -8.4164 -0.5620 28 1 0.6849 -9.0990 -1.7903 29 1 1.7051 -8.2601 -0.5034 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069497.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:06 Heat of formation + Delta-G solvation = -33.682481 kcal Electronic energy + Delta-G solvation = -16493.841199 eV Core-core repulsion = 13578.230559 eV Total energy + Delta-G solvation = -2915.610640 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.44324 -38.14162 -37.37236 -35.28622 -34.55739 -32.36166 -31.49386 -27.79505 -25.73297 -23.63064 -22.41013 -21.40905 -20.67228 -17.50177 -17.19429 -16.89699 -16.33274 -15.68352 -15.15466 -14.72605 -14.50027 -14.21843 -13.52713 -13.12620 -12.35068 -12.12316 -11.75535 -11.69743 -11.65301 -11.45912 -11.08380 -10.98580 -10.50149 -10.46623 -10.41528 -9.75134 -9.70639 -9.31808 -9.12251 -8.88246 -8.06466 -6.60534 -4.00824 2.28952 2.89796 3.13533 3.18769 3.25011 3.47020 3.78196 3.90965 4.10353 4.27439 4.48936 4.83451 4.84890 5.01926 5.16640 5.21963 5.58366 5.72564 5.88056 6.00168 6.08928 6.17682 6.39183 6.51574 7.39939 7.47428 7.79522 7.94352 8.23729 8.92293 8.98421 9.15118 9.70105 10.48008 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.032068 B = 0.007640 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.946471 B = 3663.935402 C = 4291.975832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.031 3.969 3 Si 0.937 3.063 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.304 4.304 8 H 0.115 0.885 9 N -0.408 5.408 10 C 0.144 3.856 11 C 0.492 3.508 12 O -0.503 6.503 13 O -0.533 6.533 14 C 0.550 3.450 15 O -0.565 6.565 16 C -0.158 4.158 17 C -0.136 4.136 18 C -0.044 4.044 19 C -0.166 4.166 20 C -0.167 4.167 21 H 0.275 0.725 22 H 0.132 0.868 23 H 0.080 0.920 24 H 0.393 0.607 25 H 0.128 0.872 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 -7.764 -6.117 11.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.173 4.173 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.431 4.431 8 H 0.132 0.868 9 N -0.125 5.125 10 C 0.017 3.983 11 C 0.332 3.668 12 O -0.388 6.388 13 O -0.344 6.344 14 C 0.340 3.660 15 O -0.450 6.450 16 C -0.162 4.162 17 C -0.139 4.139 18 C -0.062 4.062 19 C -0.203 4.203 20 C -0.204 4.204 21 H 0.085 0.915 22 H 0.150 0.850 23 H 0.098 0.902 24 H 0.249 0.751 25 H 0.146 0.854 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.546 -7.586 -5.713 10.529 hybrid contribution -0.462 0.867 0.538 1.120 sum -5.007 -6.720 -5.175 9.849 Atomic orbital electron populations 1.69797 1.06284 1.28449 1.46545 1.25380 0.95397 1.00334 0.96227 0.85739 0.79516 0.79869 0.78554 1.19988 1.20883 1.19052 1.19845 0.97810 0.82807 1.42634 0.86774 1.43294 1.19452 1.04908 1.44891 1.20724 0.81241 1.04916 0.91375 1.23646 0.83214 0.70868 0.89031 1.90616 1.85665 1.44846 1.17627 1.84506 1.17287 1.86365 1.46235 1.14631 0.86759 0.80254 0.84307 1.90685 1.25394 1.85856 1.43076 1.21497 0.98846 0.95744 1.00070 1.21047 0.98905 0.94985 0.98957 1.18665 1.02764 0.84724 1.00061 1.23076 0.97473 1.01920 0.97858 1.23076 0.97487 0.96272 1.03516 0.91454 0.85008 0.90211 0.75101 0.85387 0.88305 0.87866 0.87901 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.63 9.26 55.50 0.51 -22.12 15 2 C 0.03 0.79 4.89 -17.45 -0.09 0.71 15 3 Si 0.94 20.07 29.60 -169.99 -5.03 15.03 15 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 7 C -0.30 -8.40 9.34 -15.02 -0.14 -8.54 15 8 H 0.11 3.26 7.36 -52.48 -0.39 2.88 15 9 N -0.41 -10.79 2.17 -118.83 -0.26 -11.05 15 10 C 0.14 3.27 4.97 -5.19 -0.03 3.25 15 11 C 0.49 11.38 6.35 36.00 0.23 11.61 15 12 O -0.50 -13.61 16.81 -18.75 -0.32 -13.92 15 13 O -0.53 -9.86 13.42 -39.25 -0.53 -10.39 15 14 C 0.55 14.84 7.27 -14.34 -0.10 14.74 15 15 O -0.57 -16.95 16.72 5.22 0.09 -16.86 15 16 C -0.16 -3.65 11.67 -38.84 -0.45 -4.10 15 17 C -0.14 -2.59 13.47 -37.13 -0.50 -3.09 15 18 C -0.04 -0.60 6.21 -93.41 -0.58 -1.18 15 19 C -0.17 -1.93 10.21 -26.69 -0.27 -2.20 15 20 C -0.17 -1.87 10.21 -26.69 -0.27 -2.15 15 21 H 0.27 6.74 8.31 -40.82 -0.34 6.40 15 22 H 0.13 3.00 6.34 -51.93 -0.33 2.67 15 23 H 0.08 1.57 7.13 -51.93 -0.37 1.20 15 24 H 0.39 5.58 9.10 45.56 0.41 5.99 15 25 H 0.13 1.41 8.14 -51.93 -0.42 0.99 15 26 H 0.10 1.29 8.14 -51.93 -0.42 0.86 15 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 15 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 15 29 H 0.10 1.22 8.14 -51.93 -0.42 0.80 15 LS Contribution 272.86 15.07 4.11 4.11 Total: -1.00 -34.13 272.86 -5.54 -39.67 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -1.92 Total: 6.49 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -2.21 Total: 9.03 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.26 Total: -33.17 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -0.75 Total: -41.17 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -34.13 -5.54 -39.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069497.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.989 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds