Wall clock time and date at job start Sun Mar 29 2020 22:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86804 * 120.00362 * 2 1 4 4 H 1.48500 * 109.47096 * 270.00022 * 3 2 1 5 5 H 1.48503 * 109.46970 * 30.00226 * 3 2 1 6 6 H 1.48497 * 109.46971 * 150.00228 * 3 2 1 7 7 C 1.39074 * 119.99484 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99848 * 200.92342 * 7 2 1 9 9 N 1.36814 * 120.00329 * 20.92530 * 7 2 1 10 10 C 1.46502 * 119.99992 * 16.73993 * 9 7 2 11 11 C 1.50696 * 109.47304 * 263.84071 * 10 9 7 12 12 O 1.20824 * 119.99932 * 359.97438 * 11 10 9 13 13 O 1.34226 * 120.00068 * 179.97438 * 11 10 9 14 14 C 1.34780 * 120.00135 * 196.47058 * 9 7 2 15 15 O 1.21660 * 119.99958 * 359.97438 * 14 9 7 16 16 C 1.43194 * 119.99982 * 180.02562 * 14 9 7 17 17 C 5.83624 * 84.45391 * 189.20153 * 2 1 3 18 18 C 7.20826 * 80.19751 * 191.23769 * 2 1 3 19 19 C 1.53003 * 117.50083 * 273.72348 * 18 17 16 20 20 C 1.52997 * 117.49777 * 205.06206 * 18 17 16 21 21 H 0.97002 * 119.99399 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.46586 * 23.84166 * 10 9 7 23 23 H 1.09001 * 109.46810 * 143.83573 * 10 9 7 24 24 H 0.96700 * 117.00228 * 179.97438 * 13 11 10 25 25 H 1.09007 * 115.55535 * 59.39676 * 18 17 16 26 26 H 1.09001 * 117.49779 * 0.02562 * 19 18 17 27 27 H 1.08996 * 117.49731 * 145.02501 * 19 18 17 28 28 H 1.09003 * 117.50452 * 214.98254 * 20 18 17 29 29 H 1.08999 * 117.50137 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.4952 2.0464 -1.4001 5 1 1.4451 2.6527 0.7001 6 1 3.5452 1.4400 0.7000 7 6 2.0088 -1.2045 -0.0005 8 1 3.0354 -1.2355 0.3335 9 7 1.3924 -2.3500 -0.4242 10 6 0.1579 -2.2703 -1.2090 11 6 -1.0297 -2.4271 -0.2947 12 8 -0.8622 -2.5892 0.8908 13 8 -2.2737 -2.3865 -0.7973 14 6 1.9237 -3.5518 -0.1242 15 8 2.9518 -3.6179 0.5230 16 6 1.2788 -4.7507 -0.5681 17 6 0.7495 -5.7342 -0.9289 18 6 0.0863 -6.9668 -1.3842 19 6 -0.5081 -7.8857 -0.3149 20 6 0.7664 -8.2975 -1.0561 21 1 -0.4849 0.8401 0.0004 22 1 0.1068 -1.3028 -1.7084 23 1 0.1497 -3.0651 -1.9550 24 1 -3.0036 -2.4922 -0.1719 25 1 -0.4424 -6.8928 -2.3346 26 1 -0.4084 -7.5771 0.7257 27 1 -1.4275 -8.4164 -0.5620 28 1 0.6849 -9.0990 -1.7903 29 1 1.7051 -8.2601 -0.5034 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069497.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:06 Heat of formation + Delta-G solvation = -57.383398 kcal Electronic energy + Delta-G solvation = -16494.868948 eV Core-core repulsion = 13578.230559 eV Total energy + Delta-G solvation = -2916.638389 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.31673 -40.04674 -38.43134 -37.15394 -36.48056 -34.20339 -33.27612 -29.68504 -27.63805 -25.13376 -23.28319 -23.13093 -22.36882 -19.36415 -19.02875 -18.70503 -17.77925 -17.47776 -16.92226 -16.31275 -16.07940 -15.82226 -15.48151 -14.96224 -13.89704 -13.66266 -13.49055 -13.46762 -12.97369 -12.74406 -12.58776 -12.41689 -12.25673 -12.20270 -12.10966 -11.67182 -11.20856 -11.07874 -10.85334 -10.62274 -10.06095 -8.59051 -6.09617 0.57733 1.30041 1.42747 1.44366 1.56256 1.64704 2.07875 2.29065 2.50104 2.63017 2.94027 3.17884 3.32266 3.86241 4.04274 4.07801 4.15854 4.49936 4.61746 4.76540 4.80134 4.97810 5.12463 5.23466 5.33653 5.82996 5.86082 6.20826 6.30563 6.88948 7.08399 7.33412 7.70017 8.48563 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.032068 B = 0.007640 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.946471 B = 3663.935402 C = 4291.975832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.005 3.995 3 Si 1.006 2.994 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.349 4.349 8 H 0.088 0.912 9 N -0.415 5.415 10 C 0.142 3.858 11 C 0.501 3.499 12 O -0.549 6.549 13 O -0.513 6.513 14 C 0.537 3.463 15 O -0.621 6.621 16 C -0.241 4.241 17 C -0.071 4.071 18 C -0.077 4.077 19 C -0.156 4.156 20 C -0.149 4.149 21 H 0.283 0.717 22 H 0.131 0.869 23 H 0.110 0.890 24 H 0.416 0.584 25 H 0.166 0.834 26 H 0.077 0.923 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 -8.740 -7.843 13.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.199 4.199 3 Si 0.828 3.172 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.105 0.895 9 N -0.130 5.130 10 C 0.017 3.983 11 C 0.343 3.657 12 O -0.438 6.438 13 O -0.326 6.326 14 C 0.329 3.671 15 O -0.510 6.510 16 C -0.244 4.244 17 C -0.074 4.074 18 C -0.094 4.094 19 C -0.192 4.192 20 C -0.186 4.186 21 H 0.093 0.907 22 H 0.149 0.851 23 H 0.127 0.873 24 H 0.275 0.725 25 H 0.183 0.817 26 H 0.096 0.904 27 H 0.159 0.841 28 H 0.161 0.839 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.631 -8.564 -7.481 13.164 hybrid contribution 0.004 1.056 1.041 1.482 sum -6.627 -7.508 -6.441 11.907 Atomic orbital electron populations 1.69854 1.07184 1.29672 1.45300 1.26228 0.96275 1.02805 0.94571 0.84756 0.77657 0.75345 0.79456 1.17808 1.19950 1.20016 1.19826 0.97581 0.84512 1.45660 0.89455 1.43427 1.20373 1.04564 1.44640 1.20859 0.80123 1.05904 0.91451 1.23551 0.84373 0.69630 0.88118 1.90605 1.86556 1.47170 1.19499 1.84426 1.16450 1.85392 1.46287 1.15106 0.86453 0.81634 0.83928 1.90600 1.27725 1.86960 1.45723 1.20942 1.02568 0.96812 1.04110 1.22188 0.95742 0.94434 0.95022 1.19282 1.04646 0.83055 1.02417 1.23224 0.99419 1.00453 0.96133 1.23237 0.96631 0.95144 1.03586 0.90714 0.85109 0.87252 0.72471 0.81669 0.90401 0.84068 0.83908 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.69 9.26 21.68 0.20 -45.49 15 2 C 0.00 0.24 4.89 84.97 0.42 0.65 15 3 Si 1.01 41.29 29.60 68.60 2.03 43.32 15 4 H -0.25 -9.58 7.11 99.48 0.71 -8.87 15 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 6 H -0.28 -11.65 7.11 99.48 0.71 -10.94 15 7 C -0.35 -20.24 9.34 84.12 0.79 -19.45 15 8 H 0.09 5.39 7.36 -2.91 -0.02 5.37 15 9 N -0.41 -22.92 2.17 -648.10 -1.41 -24.33 15 10 C 0.14 6.52 4.97 85.63 0.43 6.94 15 11 C 0.50 23.01 6.35 71.23 0.45 23.46 15 12 O -0.55 -30.25 16.81 21.97 0.37 -29.88 15 13 O -0.51 -17.91 13.42 -51.38 -0.69 -18.60 15 14 C 0.54 30.75 7.27 85.49 0.62 31.37 15 15 O -0.62 -40.15 16.72 -4.22 -0.07 -40.22 15 16 C -0.24 -11.47 11.67 30.02 0.35 -11.12 15 17 C -0.07 -2.64 13.47 31.13 0.42 -2.22 15 18 C -0.08 -1.81 6.21 -12.60 -0.08 -1.88 15 19 C -0.16 -3.01 10.21 30.62 0.31 -2.70 15 20 C -0.15 -2.77 10.21 30.62 0.31 -2.45 15 21 H 0.28 13.55 8.31 -92.71 -0.77 12.78 15 22 H 0.13 5.97 6.34 -2.39 -0.02 5.96 15 23 H 0.11 4.26 7.13 -2.39 -0.02 4.24 15 24 H 0.42 10.74 9.10 -74.06 -0.67 10.07 15 25 H 0.17 2.77 8.14 -2.38 -0.02 2.75 15 26 H 0.08 1.87 8.14 -2.39 -0.02 1.85 15 27 H 0.14 1.72 8.14 -2.39 -0.02 1.70 15 28 H 0.14 1.58 8.14 -2.39 -0.02 1.56 15 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 15 Total: -1.00 -79.40 272.86 4.98 -74.43 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.53 Total: 18.16 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 4.02 Total: 22.61 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -1.21 Total: -69.82 kcal Atomic # 8 Polarization: -88.31 SS G_CDS: -0.39 Total: -88.70 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -79.40 4.98 -74.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069497.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.042 kcal (2) G-P(sol) polarization free energy of solvation -79.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds