Wall clock time and date at job start Sun Mar 29 2020 22:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00043 * 2 1 4 4 H 1.48506 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47219 * 299.99657 * 3 2 1 6 6 H 1.48493 * 109.47237 * 59.99784 * 3 2 1 7 7 C 1.38813 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00226 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99633 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46989 * 324.99521 * 10 9 7 12 12 C 1.50693 * 109.47344 * 84.99643 * 10 9 7 13 13 O 1.20828 * 120.00184 * 359.97438 * 12 10 9 14 14 O 1.34231 * 120.00198 * 180.02562 * 12 10 9 15 15 C 1.50702 * 109.47322 * 205.00192 * 10 9 7 16 16 C 1.38294 * 119.97003 * 319.97017 * 15 10 9 17 17 C 1.38232 * 120.11124 * 180.02562 * 16 15 10 18 18 C 1.38173 * 120.05823 * 359.97438 * 17 16 15 19 19 C 1.38705 * 119.94203 * 359.76822 * 18 17 16 20 20 O 1.35904 * 120.05924 * 180.25551 * 19 18 17 21 21 C 1.38122 * 119.97497 * 140.00074 * 15 10 9 22 22 H 0.97002 * 119.99531 * 0.02562 * 1 2 3 23 23 H 0.97004 * 120.00618 * 359.97438 * 9 7 2 24 24 H 0.96696 * 116.99934 * 180.02562 * 14 12 10 25 25 H 1.08002 * 119.94166 * 0.02562 * 16 15 10 26 26 H 1.08008 * 119.97134 * 180.02562 * 17 16 15 27 27 H 1.07997 * 120.02588 * 180.02562 * 18 17 16 28 28 H 0.96692 * 113.99886 * 270.25458 * 20 19 18 29 29 H 1.08002 * 120.02504 * 359.97056 * 21 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9692 -3.5508 -0.5872 12 6 2.4154 -4.0293 1.4174 13 8 2.0919 -3.3086 2.3318 14 8 3.0940 -5.1611 1.6628 15 6 1.1945 -4.7359 -0.5990 16 6 -0.1563 -4.7827 -0.3062 17 6 -0.9510 -5.7716 -0.8552 18 6 -0.3974 -6.7158 -1.6986 19 6 0.9561 -6.6678 -1.9980 20 8 1.5021 -7.5922 -2.8314 21 6 1.7528 -5.6778 -1.4410 22 1 -0.4849 0.8401 -0.0004 23 1 0.3555 -2.3881 0.0005 24 1 3.3000 -5.3579 2.5868 25 1 -0.5910 -4.0454 0.3524 26 1 -2.0058 -5.8058 -0.6253 27 1 -1.0189 -7.4879 -2.1275 28 1 1.8280 -8.3835 -2.3814 29 1 2.8078 -5.6408 -1.6693 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610623253.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:01 Heat of formation + Delta-G solvation = -91.845053 kcal Electronic energy + Delta-G solvation = -16449.839549 eV Core-core repulsion = 13531.706791 eV Total energy + Delta-G solvation = -2918.132758 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.94180 -39.05402 -36.81468 -35.47744 -34.49899 -32.16398 -30.25512 -29.21481 -26.58688 -23.63234 -22.29314 -22.15942 -20.15907 -18.14773 -17.54769 -17.09476 -16.14395 -15.83190 -15.43157 -15.20657 -14.63839 -14.43664 -13.76621 -13.44579 -13.20346 -12.59135 -12.28967 -11.95430 -11.49652 -11.30409 -11.05868 -10.93879 -10.78911 -10.33215 -10.15352 -9.97385 -9.91423 -9.14609 -8.60097 -8.35690 -7.27667 -5.93337 -3.24233 1.45109 1.53881 3.03560 3.36528 3.43862 3.46178 3.66914 3.96410 4.31316 4.51015 5.03160 5.11175 5.34325 5.49123 5.51908 5.66339 5.79082 5.87832 6.11582 6.14792 6.25688 6.58024 6.65342 6.86175 6.99346 7.18088 7.56186 7.75297 8.20095 8.70409 9.34499 9.77965 10.14221 11.28005 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.027733 B = 0.007262 C = 0.006596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.368770 B = 3854.629200 C = 4243.909621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.001 3.999 3 Si 0.915 3.085 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.076 0.924 9 N -0.678 5.678 10 C 0.225 3.775 11 H 0.098 0.902 12 C 0.435 3.565 13 O -0.496 6.496 14 O -0.533 6.533 15 C -0.054 4.054 16 C -0.109 4.109 17 C -0.104 4.104 18 C -0.150 4.150 19 C 0.096 3.904 20 O -0.500 6.500 21 C -0.124 4.124 22 H 0.259 0.741 23 H 0.393 0.607 24 H 0.386 0.614 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.123 0.877 28 H 0.385 0.615 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 -14.584 -1.546 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.197 4.197 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.109 3.891 11 H 0.115 0.885 12 C 0.271 3.729 13 O -0.381 6.381 14 O -0.344 6.344 15 C -0.055 4.055 16 C -0.128 4.128 17 C -0.122 4.122 18 C -0.169 4.169 19 C 0.052 3.948 20 O -0.310 6.310 21 C -0.143 4.143 22 H 0.069 0.931 23 H 0.230 0.770 24 H 0.243 0.757 25 H 0.148 0.852 26 H 0.144 0.856 27 H 0.141 0.859 28 H 0.240 0.760 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.701 -13.651 -2.151 13.924 hybrid contribution 0.372 0.483 1.191 1.338 sum 2.073 -13.168 -0.961 13.364 Atomic orbital electron populations 1.69673 1.05302 1.26257 1.55492 1.24812 0.95581 0.98072 1.01209 0.86015 0.78900 0.83284 0.77288 1.20261 1.21514 1.21534 1.19262 0.91252 0.83412 1.44486 0.90625 1.42462 1.06231 0.98629 1.84390 1.18825 0.96045 0.86208 0.88002 0.88459 1.26786 0.73564 0.76920 0.95624 1.90667 1.50193 1.50595 1.46614 1.84718 1.70686 1.43966 1.35033 1.19677 0.94227 0.94956 0.96670 1.21154 0.93353 0.98172 1.00106 1.20976 0.99793 0.94530 0.96919 1.21337 0.94833 1.00939 0.99796 1.18353 0.91274 0.92017 0.93117 1.84833 1.80250 1.31216 1.34695 1.21211 1.00336 0.95591 0.97161 0.93069 0.77030 0.75697 0.85206 0.85650 0.85857 0.75966 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.43 13.06 55.49 0.72 -26.71 15 2 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 15 3 Si 0.92 22.29 29.55 -169.99 -5.02 17.27 15 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 15 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 7 C -0.25 -7.03 9.81 -15.06 -0.15 -7.18 15 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 15 9 N -0.68 -17.04 4.59 -55.69 -0.26 -17.29 15 10 C 0.23 4.59 3.00 -70.23 -0.21 4.38 15 11 H 0.10 1.88 7.94 -51.93 -0.41 1.47 15 12 C 0.43 8.82 7.64 36.00 0.28 9.09 15 13 O -0.50 -12.09 17.09 -18.75 -0.32 -12.41 15 14 O -0.53 -8.39 13.34 -39.26 -0.52 -8.91 15 15 C -0.05 -0.96 4.88 -104.64 -0.51 -1.47 15 16 C -0.11 -1.88 9.05 -39.56 -0.36 -2.24 15 17 C -0.10 -1.49 10.04 -39.61 -0.40 -1.89 15 18 C -0.15 -2.01 9.99 -39.43 -0.39 -2.41 15 19 C 0.10 1.36 6.70 -39.22 -0.26 1.09 15 20 O -0.50 -6.01 13.50 -19.44 -0.26 -6.28 15 21 C -0.12 -1.91 9.61 -39.43 -0.38 -2.29 15 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 23 H 0.39 10.33 6.06 -40.82 -0.25 10.08 15 24 H 0.39 4.46 9.10 45.56 0.41 4.87 15 25 H 0.13 2.41 6.91 -52.49 -0.36 2.04 15 26 H 0.13 1.48 8.06 -52.48 -0.42 1.06 15 27 H 0.12 1.35 8.06 -52.49 -0.42 0.93 15 28 H 0.39 2.63 9.06 45.56 0.41 3.04 15 29 H 0.13 1.81 8.04 -52.49 -0.42 1.39 15 LS Contribution 268.06 15.07 4.04 4.04 Total: -1.00 -33.98 268.06 -5.11 -39.10 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -1.01 Total: 14.16 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.48 Total: -2.97 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.47 Total: -44.00 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.11 Total: -27.60 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.98 -5.11 -39.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623253.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.750 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds