Wall clock time and date at job start Sun Mar 29 2020 22:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00043 * 2 1 4 4 H 1.48506 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47219 * 299.99657 * 3 2 1 6 6 H 1.48493 * 109.47237 * 59.99784 * 3 2 1 7 7 C 1.38813 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00226 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99633 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.46989 * 324.99521 * 10 9 7 12 12 C 1.50693 * 109.47344 * 84.99643 * 10 9 7 13 13 O 1.20828 * 120.00184 * 359.97438 * 12 10 9 14 14 O 1.34231 * 120.00198 * 180.02562 * 12 10 9 15 15 C 1.50702 * 109.47322 * 205.00192 * 10 9 7 16 16 C 1.38294 * 119.97003 * 319.97017 * 15 10 9 17 17 C 1.38232 * 120.11124 * 180.02562 * 16 15 10 18 18 C 1.38173 * 120.05823 * 359.97438 * 17 16 15 19 19 C 1.38705 * 119.94203 * 359.76822 * 18 17 16 20 20 O 1.35904 * 120.05924 * 180.25551 * 19 18 17 21 21 C 1.38122 * 119.97497 * 140.00074 * 15 10 9 22 22 H 0.97002 * 119.99531 * 0.02562 * 1 2 3 23 23 H 0.97004 * 120.00618 * 359.97438 * 9 7 2 24 24 H 0.96696 * 116.99934 * 180.02562 * 14 12 10 25 25 H 1.08002 * 119.94166 * 0.02562 * 16 15 10 26 26 H 1.08008 * 119.97134 * 180.02562 * 17 16 15 27 27 H 1.07997 * 120.02588 * 180.02562 * 18 17 16 28 28 H 0.96692 * 113.99886 * 270.25458 * 20 19 18 29 29 H 1.08002 * 120.02504 * 359.97056 * 21 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9692 -3.5508 -0.5872 12 6 2.4154 -4.0293 1.4174 13 8 2.0919 -3.3086 2.3318 14 8 3.0940 -5.1611 1.6628 15 6 1.1945 -4.7359 -0.5990 16 6 -0.1563 -4.7827 -0.3062 17 6 -0.9510 -5.7716 -0.8552 18 6 -0.3974 -6.7158 -1.6986 19 6 0.9561 -6.6678 -1.9980 20 8 1.5021 -7.5922 -2.8314 21 6 1.7528 -5.6778 -1.4410 22 1 -0.4849 0.8401 -0.0004 23 1 0.3555 -2.3881 0.0005 24 1 3.3000 -5.3579 2.5868 25 1 -0.5910 -4.0454 0.3524 26 1 -2.0058 -5.8058 -0.6253 27 1 -1.0189 -7.4879 -2.1275 28 1 1.8280 -8.3835 -2.3814 29 1 2.8078 -5.6408 -1.6693 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610623253.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:01 Heat of formation + Delta-G solvation = -118.539145 kcal Electronic energy + Delta-G solvation = -16450.997091 eV Core-core repulsion = 13531.706791 eV Total energy + Delta-G solvation = -2919.290301 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.38688 -40.37177 -38.00020 -37.01116 -36.20605 -33.91073 -31.75185 -30.51423 -28.21492 -25.57496 -23.50378 -23.47884 -21.61439 -19.64401 -19.22024 -18.53995 -17.45712 -17.36223 -16.93828 -16.55444 -16.19406 -15.81578 -15.45017 -15.04947 -14.58483 -14.13434 -13.62660 -13.24458 -13.00860 -12.90176 -12.71147 -12.58571 -12.36602 -12.11315 -11.92805 -11.74574 -11.38686 -11.06550 -9.80858 -9.54209 -9.28636 -8.04497 -5.36993 0.26808 0.38064 1.40594 1.44948 1.47008 1.56701 2.22589 2.50086 2.76561 3.27783 3.38476 3.71239 3.82965 4.00788 4.24442 4.34437 4.44372 4.59246 4.74263 4.92456 5.05608 5.39673 5.44137 5.46662 5.62281 5.74031 5.89761 6.13330 6.94384 7.19627 7.22364 7.82541 8.09121 9.18251 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.027733 B = 0.007262 C = 0.006596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.368770 B = 3854.629200 C = 4243.909621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.062 4.062 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.295 1.295 7 C -0.255 4.255 8 H 0.079 0.921 9 N -0.697 5.697 10 C 0.221 3.779 11 H 0.108 0.892 12 C 0.450 3.550 13 O -0.543 6.543 14 O -0.512 6.512 15 C -0.071 4.071 16 C -0.133 4.133 17 C -0.100 4.100 18 C -0.142 4.142 19 C 0.106 3.894 20 O -0.503 6.503 21 C -0.129 4.129 22 H 0.255 0.745 23 H 0.383 0.617 24 H 0.412 0.588 25 H 0.103 0.897 26 H 0.149 0.851 27 H 0.155 0.845 28 H 0.411 0.589 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 -16.749 -2.419 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.255 4.255 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.222 1.222 7 C -0.386 4.386 8 H 0.097 0.903 9 N -0.336 5.336 10 C 0.107 3.893 11 H 0.125 0.875 12 C 0.289 3.711 13 O -0.432 6.432 14 O -0.324 6.324 15 C -0.072 4.072 16 C -0.152 4.152 17 C -0.118 4.118 18 C -0.160 4.160 19 C 0.062 3.938 20 O -0.317 6.317 21 C -0.148 4.148 22 H 0.064 0.936 23 H 0.217 0.783 24 H 0.272 0.728 25 H 0.121 0.879 26 H 0.167 0.833 27 H 0.173 0.827 28 H 0.270 0.730 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.643 -15.915 -3.020 16.413 hybrid contribution 0.174 0.850 1.444 1.685 sum 2.817 -15.065 -1.576 15.407 Atomic orbital electron populations 1.69819 1.06725 1.26550 1.57862 1.25632 0.96444 1.01326 1.02134 0.85028 0.78328 0.79243 0.76801 1.18830 1.21196 1.22178 1.19615 0.91578 0.84670 1.42770 0.90289 1.42504 1.05886 0.99683 1.85541 1.18970 0.96651 0.85650 0.88043 0.87498 1.26159 0.72953 0.77204 0.94824 1.90663 1.52280 1.52416 1.47860 1.84591 1.69183 1.41421 1.37176 1.19466 0.94077 0.95338 0.98305 1.21088 0.93802 0.99106 1.01199 1.21218 1.00703 0.93529 0.96337 1.21676 0.94935 1.00828 0.98577 1.18385 0.91461 0.91854 0.92112 1.84777 1.80203 1.32005 1.34687 1.21327 1.01247 0.95445 0.96788 0.93568 0.78275 0.72765 0.87863 0.83298 0.82689 0.72957 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.21 13.06 21.65 0.28 -58.92 15 2 C -0.06 -3.61 5.50 84.86 0.47 -3.14 15 3 Si 0.98 46.63 29.55 68.60 2.03 48.65 15 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 15 5 H -0.29 -13.31 7.11 99.48 0.71 -12.61 15 6 H -0.29 -14.19 7.11 99.48 0.71 -13.49 15 7 C -0.26 -14.42 9.81 84.03 0.82 -13.60 15 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 15 9 N -0.70 -36.08 4.59 -330.09 -1.52 -37.60 15 10 C 0.22 9.03 3.00 43.50 0.13 9.16 15 11 H 0.11 4.10 7.94 -2.39 -0.02 4.08 15 12 C 0.45 18.09 7.64 71.23 0.54 18.63 15 13 O -0.54 -26.88 17.09 21.96 0.38 -26.50 15 14 O -0.51 -15.01 13.34 -51.42 -0.69 -15.70 15 15 C -0.07 -2.47 4.88 -19.88 -0.10 -2.56 15 16 C -0.13 -4.60 9.05 22.28 0.20 -4.40 15 17 C -0.10 -2.67 10.04 22.25 0.22 -2.45 15 18 C -0.14 -3.30 9.99 22.37 0.22 -3.07 15 19 C 0.11 2.64 6.70 22.51 0.15 2.79 15 20 O -0.50 -10.02 13.50 -92.47 -1.25 -11.26 15 21 C -0.13 -3.71 9.61 22.37 0.21 -3.49 15 22 H 0.26 15.12 8.31 -92.71 -0.77 14.35 15 23 H 0.38 21.11 6.06 -92.71 -0.56 20.55 15 24 H 0.41 8.40 9.10 -74.06 -0.67 7.73 15 25 H 0.10 4.07 6.91 -2.91 -0.02 4.05 15 26 H 0.15 3.18 8.06 -2.91 -0.02 3.16 15 27 H 0.16 2.64 8.06 -2.91 -0.02 2.62 15 28 H 0.41 3.75 9.06 -74.06 -0.67 3.08 15 29 H 0.14 3.62 8.04 -2.91 -0.02 3.60 15 Total: -1.00 -74.65 268.06 1.43 -73.22 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.69 Total: 30.26 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 2.88 Total: -2.14 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -1.23 Total: -96.52 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -1.56 Total: -53.47 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -74.65 1.43 -73.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623253.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.320 kcal (2) G-P(sol) polarization free energy of solvation -74.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds