Wall clock time and date at job start Sun Mar 29 2020 22:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47103 * 97.88016 * 3 2 1 5 5 C 1.36893 * 119.99767 * 264.30969 * 4 3 2 6 6 H 1.08001 * 120.00548 * 133.01523 * 5 4 3 7 7 C 1.39030 * 119.99815 * 313.01680 * 5 4 3 8 8 N 1.31374 * 120.00431 * 2.76894 * 7 5 4 9 9 Si 1.86807 * 119.99887 * 182.77343 * 7 5 4 10 10 H 1.48503 * 109.46964 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46890 * 119.99697 * 9 7 5 12 12 H 1.48495 * 109.46926 * 239.99838 * 9 7 5 13 13 C 1.34773 * 120.00100 * 84.30375 * 4 3 2 14 14 O 1.21606 * 120.00029 * 5.14329 * 13 4 3 15 15 C 1.47580 * 120.00048 * 185.13747 * 13 4 3 16 16 C 1.39535 * 122.11631 * 174.45053 * 15 13 4 17 17 C 1.34979 * 111.68500 * 179.78571 * 16 15 13 18 18 S 1.71763 * 105.46550 * 0.42929 * 17 16 15 19 19 N 1.30661 * 122.11561 * 354.73840 * 15 13 4 20 20 H 1.09002 * 109.47122 * 337.87529 * 3 2 1 21 21 H 1.09002 * 109.46744 * 217.87762 * 3 2 1 22 22 H 0.97002 * 120.00663 * 180.02562 * 8 7 5 23 23 H 1.08000 * 124.15433 * 359.97438 * 16 15 13 24 24 H 1.07998 * 127.26617 * 180.13491 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0964 0.1902 -1.3682 5 6 3.4358 -0.8951 -2.1303 6 1 3.0824 -0.9723 -3.1479 7 6 4.2355 -1.8981 -1.5943 8 7 4.6206 -1.8314 -0.3400 9 14 4.7628 -3.3406 -2.6577 10 1 4.2002 -3.1810 -4.0227 11 1 6.2452 -3.3830 -2.7346 12 1 4.2617 -4.6046 -2.0609 13 6 3.2112 1.4331 -1.8766 14 8 2.9995 2.4006 -1.1709 15 6 3.5940 1.6200 -3.2896 16 6 3.6157 2.8784 -3.8921 17 6 3.9998 2.8062 -5.1841 18 16 4.2778 1.1384 -5.4868 19 7 3.9286 0.6169 -4.0571 20 1 2.9719 -0.9512 0.3870 21 1 2.9710 0.8120 0.6310 22 1 5.1789 -2.5310 0.0339 23 1 3.3599 3.7975 -3.3859 24 1 4.1050 3.6238 -5.8817 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611113840.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:35 Heat of formation + Delta-G solvation = 37.763131 kcal Electronic energy + Delta-G solvation = -14275.025902 eV Core-core repulsion = 11701.725904 eV Total energy + Delta-G solvation = -2573.299998 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.031 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.29215 -39.21518 -37.58371 -36.60767 -33.56216 -32.32148 -29.79409 -27.41119 -25.99733 -22.45576 -20.99502 -19.80066 -19.18177 -18.44880 -17.29467 -16.86188 -16.37526 -16.00823 -15.48172 -14.80760 -14.69207 -14.38371 -14.08551 -13.79485 -13.75177 -13.12306 -13.04835 -12.90394 -12.27304 -12.07035 -11.97016 -11.58576 -11.07339 -10.61866 -10.49961 -9.71840 -9.44995 -8.31780 -6.14410 -0.12552 0.78290 0.95819 1.12079 1.46255 1.49802 1.58054 1.65555 1.79813 2.32971 2.44066 2.93359 3.00648 3.44081 4.02710 4.21881 4.57879 4.62905 4.81373 5.00623 5.07535 5.61017 5.66300 5.84189 6.47151 6.54954 7.07561 7.32118 7.76316 8.72542 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.018538 B = 0.013109 C = 0.008568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.078154 B = 2135.492714 C = 3267.043881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.227 3.773 3 C 0.197 3.803 4 N -0.431 5.431 5 C -0.318 4.318 6 H 0.110 0.890 7 C 0.012 3.988 8 N -0.896 5.896 9 Si 0.980 3.020 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.277 1.277 13 C 0.532 3.468 14 O -0.609 6.609 15 C 0.041 3.959 16 C -0.161 4.161 17 C -0.258 4.258 18 S 0.441 5.559 19 N -0.498 5.498 20 H 0.159 0.841 21 H 0.109 0.891 22 H 0.278 0.722 23 H 0.167 0.833 24 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 3.176 -9.930 11.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.090 4.090 3 C 0.071 3.929 4 N -0.149 5.149 5 C -0.448 4.448 6 H 0.127 0.873 7 C -0.191 4.191 8 N -0.535 5.535 9 Si 0.804 3.196 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.202 1.202 13 C 0.319 3.681 14 O -0.494 6.494 15 C -0.131 4.131 16 C -0.194 4.194 17 C -0.407 4.407 18 S 0.596 5.404 19 N -0.331 5.331 20 H 0.176 0.824 21 H 0.127 0.873 22 H 0.089 0.911 23 H 0.184 0.816 24 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.643 1.694 -10.406 10.869 hybrid contribution 0.159 0.844 1.122 1.413 sum 2.802 2.538 -9.284 10.024 Atomic orbital electron populations 1.80966 1.14071 1.12275 1.09592 1.30653 0.96293 0.90417 0.91652 1.19390 0.78058 1.08139 0.87341 1.43371 1.54357 1.05138 1.12064 1.20081 1.29323 0.98101 0.97310 0.87313 1.26207 0.94459 1.01474 0.96984 1.69560 1.34792 1.35595 1.13522 0.85045 0.78075 0.77355 0.79098 1.18566 1.20316 1.20247 1.18216 0.80231 0.83313 0.86326 1.90624 1.57388 1.40650 1.60757 1.21073 1.06428 0.89694 0.95938 1.21444 1.04691 0.97903 0.95349 1.27415 1.06185 1.07185 0.99911 1.80319 1.53657 0.94508 1.11927 1.73303 1.20261 1.32507 1.07018 0.82440 0.87278 0.91119 0.81606 0.76135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -22.98 18.54 20.01 0.37 -22.61 14 2 C 0.23 10.37 15.71 89.44 1.41 11.77 14 3 C 0.20 8.91 5.37 84.57 0.45 9.36 14 4 N -0.43 -21.17 2.48 -648.97 -1.61 -22.79 14 5 C -0.32 -15.63 7.64 84.09 0.64 -14.99 14 6 H 0.11 5.41 5.97 -2.91 -0.02 5.39 14 7 C 0.01 0.56 5.34 84.95 0.45 1.01 14 8 N -0.90 -43.51 10.93 21.68 0.24 -43.27 14 9 Si 0.98 38.71 29.55 68.60 2.03 40.74 14 10 H -0.26 -10.13 7.11 99.48 0.71 -9.42 14 11 H -0.28 -10.85 7.11 99.48 0.71 -10.14 14 12 H -0.28 -10.69 7.11 99.48 0.71 -9.98 14 13 C 0.53 25.97 7.55 86.71 0.65 26.63 14 14 O -0.61 -31.19 16.31 -4.05 -0.07 -31.26 14 15 C 0.04 1.73 6.53 42.10 0.28 2.01 14 16 C -0.16 -5.32 9.98 21.83 0.22 -5.10 14 17 C -0.26 -6.17 11.40 67.07 0.76 -5.41 14 18 S 0.44 11.89 23.20 -56.49 -1.31 10.58 14 19 N -0.50 -19.73 7.63 -75.21 -0.57 -20.31 14 20 H 0.16 7.26 5.45 -2.39 -0.01 7.25 14 21 H 0.11 4.74 7.53 -2.39 -0.02 4.73 14 22 H 0.28 12.70 8.31 -92.71 -0.77 11.93 14 23 H 0.17 5.25 7.99 -2.91 -0.02 5.23 14 24 H 0.22 3.10 8.06 -2.91 -0.02 3.08 14 Total: -1.00 -60.76 242.82 5.20 -55.57 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.26 Total: 8.06 kcal Atomic # 6 Polarization: 20.42 SS G_CDS: 4.87 Total: 25.29 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -1.58 Total: -108.97 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.07 Total: -31.26 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Atomic # 16 Polarization: 11.89 SS G_CDS: -1.31 Total: 10.58 kcal Total: -60.76 5.20 -55.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113840.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.332 kcal (2) G-P(sol) polarization free energy of solvation -60.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds