Wall clock time and date at job start Sun Mar 29 2020 22:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00521 * 2 1 4 4 H 1.48500 * 109.47260 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47400 * 300.00475 * 3 2 1 6 6 H 1.48507 * 109.47057 * 60.00271 * 3 2 1 7 7 C 1.37883 * 119.99328 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99671 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00248 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00401 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99611 * 359.97438 * 11 10 9 13 13 C 1.50690 * 120.00347 * 179.97438 * 11 10 9 14 14 H 1.09007 * 115.55011 * 34.27667 * 13 11 10 15 15 C 1.53000 * 117.50063 * 248.60878 * 13 11 10 16 16 C 1.53002 * 60.02940 * 252.49714 * 15 13 11 17 17 H 1.09000 * 117.49996 * 107.50493 * 16 15 13 18 18 C 1.53002 * 117.49773 * 252.51785 * 16 15 13 19 19 F 1.39907 * 109.47260 * 8.61221 * 18 16 15 20 20 F 1.39899 * 109.46905 * 128.60668 * 18 16 15 21 21 F 1.39894 * 109.47581 * 248.61120 * 18 16 15 22 22 H 0.97010 * 119.99354 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46774 * 60.00074 * 9 7 2 24 24 H 1.08997 * 109.47332 * 300.00464 * 9 7 2 25 25 H 0.97000 * 119.99568 * 0.02562 * 10 9 7 26 26 H 1.09002 * 117.49833 * 359.97438 * 15 13 11 27 27 H 1.09002 * 117.49953 * 144.99860 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2027 -3.6128 -0.0005 11 6 1.7534 -4.8835 -0.0011 12 8 0.5610 -5.1050 -0.0011 13 6 2.7325 -6.0289 -0.0016 14 1 3.6558 -5.8585 0.5522 15 6 2.8152 -6.8870 -1.2657 16 6 2.1601 -7.4485 -0.0022 17 1 1.0752 -7.5540 -0.0021 18 6 2.9275 -8.5200 0.7751 19 9 4.2187 -8.6417 0.2504 20 9 3.0045 -8.1530 2.1229 21 9 2.2611 -9.7449 0.6626 22 1 -0.4850 0.8402 0.0004 23 1 0.6238 -2.5566 -0.8904 24 1 0.6245 -2.5571 0.8896 25 1 3.1564 -3.4356 -0.0002 26 1 2.1611 -6.6233 -2.0967 27 1 3.7928 -7.2812 -1.5434 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618219587.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:00 Heat of formation + Delta-G solvation = -177.317236 kcal Electronic energy + Delta-G solvation = -16443.714338 eV Core-core repulsion = 12980.018487 eV Total energy + Delta-G solvation = -3463.695850 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.18698 -47.73479 -47.65033 -39.48016 -36.50621 -34.25753 -32.38546 -28.02155 -26.90036 -24.26466 -22.19951 -21.66663 -19.77819 -18.72630 -18.42271 -17.81947 -17.11674 -15.79600 -15.27476 -14.72662 -14.60744 -14.55264 -14.36542 -14.11490 -13.86108 -13.83455 -13.42354 -13.36680 -12.38340 -12.00678 -11.93993 -11.79646 -11.12803 -10.98298 -10.92435 -10.70661 -10.36023 -9.44627 -9.27588 -8.80562 -8.00260 -6.21863 -4.29091 2.56341 2.72369 3.20671 3.27813 3.30698 3.40403 3.54897 3.84835 4.10221 4.29054 4.35140 4.51206 4.70978 4.98187 5.14715 5.30419 5.49982 5.72423 5.76072 7.21256 7.30137 7.43240 7.59366 7.90187 8.50283 8.69154 8.95734 9.37564 10.88352 Molecular weight = 237.07amu Principal moments of inertia in cm(-1) A = 0.057009 B = 0.004599 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.032634 B = 6086.775813 C = 6220.934546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.702 5.702 11 C 0.527 3.473 12 O -0.552 6.552 13 C -0.154 4.154 14 H 0.131 0.869 15 C -0.122 4.122 16 C -0.204 4.204 17 H 0.159 0.841 18 C 0.486 3.514 19 F -0.183 7.183 20 F -0.178 7.178 21 F -0.179 7.179 22 H 0.266 0.734 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.393 0.607 26 H 0.119 0.881 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.170 -14.415 -0.792 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.349 5.349 11 C 0.311 3.689 12 O -0.431 6.431 13 C -0.176 4.176 14 H 0.149 0.851 15 C -0.159 4.159 16 C -0.224 4.224 17 H 0.177 0.823 18 C 0.432 3.568 19 F -0.165 7.165 20 F -0.159 7.159 21 F -0.161 7.161 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.226 0.774 26 H 0.137 0.863 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.158 -14.418 -0.766 16.115 hybrid contribution 0.966 0.831 0.262 1.301 sum 8.124 -13.588 -0.504 15.839 Atomic orbital electron populations 1.69986 1.06126 1.27291 1.48806 1.24959 0.94933 0.99522 0.94612 0.86341 0.79826 0.82842 0.77788 1.19596 1.20770 1.20758 1.21247 0.93352 0.90332 1.53348 0.91738 1.19181 0.88267 0.81817 0.97950 1.46384 1.11445 1.05690 1.71376 1.19251 0.88137 0.83669 0.77874 1.90680 1.16377 1.84739 1.51339 1.22464 1.01480 0.89831 1.03794 0.85103 1.23193 1.03044 0.98796 0.90865 1.23411 1.02645 0.92844 1.03452 0.82349 1.19533 0.77356 0.81852 0.78080 1.93156 1.40624 1.96298 1.86391 1.93212 1.96210 1.91441 1.35080 1.93183 1.80449 1.46537 1.95883 0.92432 0.95319 0.95303 0.77373 0.86304 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.29 55.43 0.74 -24.94 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 15 3 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 15 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 7 C -0.54 -14.46 9.28 -34.44 -0.32 -14.78 15 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 15 9 C 0.25 6.41 5.43 -5.20 -0.03 6.38 15 10 N -0.70 -14.19 5.55 -61.48 -0.34 -14.53 15 11 C 0.53 9.99 7.61 -10.99 -0.08 9.91 15 12 O -0.55 -12.67 16.26 5.56 0.09 -12.58 15 13 C -0.15 -2.07 5.84 -91.74 -0.54 -2.60 15 14 H 0.13 1.48 8.14 -51.93 -0.42 1.05 15 15 C -0.12 -1.30 9.62 -26.73 -0.26 -1.56 15 16 C -0.20 -2.50 5.41 -90.58 -0.49 -2.99 15 17 H 0.16 2.09 7.67 -51.93 -0.40 1.69 15 18 C 0.49 5.71 3.36 37.16 0.12 5.84 15 19 F -0.18 -2.03 15.89 2.25 0.04 -2.00 15 20 F -0.18 -2.32 17.27 2.25 0.04 -2.28 15 21 F -0.18 -2.14 17.32 2.25 0.04 -2.10 15 22 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 23 H 0.03 0.82 8.14 -51.93 -0.42 0.39 15 24 H 0.03 0.83 8.14 -51.93 -0.42 0.40 15 25 H 0.39 6.75 8.32 -40.82 -0.34 6.41 15 26 H 0.12 1.28 8.14 -51.93 -0.42 0.86 15 27 H 0.12 1.01 7.22 -51.93 -0.37 0.63 15 LS Contribution 260.13 15.07 3.92 3.92 Total: -1.00 -30.60 260.13 -4.53 -35.12 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -2.34 Total: 2.05 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -1.69 Total: 1.83 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.40 Total: -39.47 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 0.11 Total: -6.38 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.60 -4.53 -35.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618219587.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.197 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds