Wall clock time and date at job start Sun Mar 29 2020 22:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86805 * 119.99882 * 2 1 4 4 H 1.48505 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46723 * 299.99881 * 3 2 1 6 6 H 1.48501 * 109.47152 * 60.00246 * 3 2 1 7 7 C 1.40051 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99693 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99860 * 359.97438 * 9 7 2 11 11 N 1.34771 * 119.99614 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47064 * 179.97438 * 12 11 9 14 14 C 1.38201 * 119.96946 * 259.72665 * 13 12 11 15 15 C 1.38159 * 120.10530 * 179.72506 * 14 13 12 16 16 C 1.38797 * 120.05380 * 0.54673 * 15 14 13 17 17 O 1.35895 * 120.02778 * 179.70339 * 16 15 14 18 18 C 1.38607 * 119.94604 * 359.72797 * 16 15 14 19 19 C 1.38659 * 119.89398 * 359.97438 * 18 16 15 20 20 O 1.35896 * 120.03031 * 180.02562 * 19 18 16 21 21 H 0.97002 * 120.00059 * 359.97438 * 1 2 3 22 22 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 23 23 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 24 24 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 25 25 H 1.07997 * 119.94944 * 359.97438 * 14 13 12 26 26 H 1.08001 * 119.97291 * 180.24636 * 15 14 13 27 27 H 0.96708 * 114.00316 * 270.02375 * 17 16 15 28 28 H 1.08001 * 120.05686 * 180.02562 * 18 16 15 29 29 H 0.96697 * 113.99904 * 269.97522 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 0.0004 11 7 1.9490 -3.6476 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 6 2.1959 -6.0619 -0.0016 14 6 2.4822 -6.7248 -1.1799 15 6 3.3839 -7.7716 -1.1847 16 6 3.9958 -8.1672 -0.0034 17 8 4.8781 -9.2009 -0.0076 18 6 3.7060 -7.5076 1.1807 19 6 2.8054 -6.4533 1.1818 20 8 2.5196 -5.8042 2.3410 21 1 -0.4850 0.8401 0.0004 22 1 2.9190 -3.6477 -0.0009 23 1 0.5896 -4.9744 0.8887 24 1 0.5902 -4.9740 -0.8913 25 1 2.0035 -6.4215 -2.0993 26 1 3.6091 -8.2856 -2.1074 27 1 4.4720 -10.0653 0.1442 28 1 4.1814 -7.8137 2.1008 29 1 1.7752 -6.1813 2.8297 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643104164.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:23 Heat of formation + Delta-G solvation = -101.738780 kcal Electronic energy + Delta-G solvation = -16011.482004 eV Core-core repulsion = 13092.920221 eV Total energy + Delta-G solvation = -2918.561782 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.14435 -37.98816 -37.05900 -35.80192 -33.33423 -32.25961 -30.34430 -29.58524 -26.59214 -24.60724 -22.77260 -21.45530 -19.60612 -19.05274 -17.39710 -17.03762 -16.29702 -15.80969 -15.41978 -15.04611 -14.40066 -13.92808 -13.81152 -13.53522 -13.29788 -12.62664 -12.27183 -11.93033 -11.60170 -11.29403 -11.07651 -10.87984 -10.76811 -10.50239 -10.37440 -10.15566 -8.88017 -8.82286 -8.53087 -7.54611 -7.44444 -6.14716 -4.59225 1.10615 1.22504 3.16084 3.24085 3.29175 3.41109 3.97274 4.16172 4.40223 4.62660 4.86141 4.97412 5.04794 5.21097 5.43505 5.67346 5.78602 5.87178 6.14527 6.21475 6.30112 6.36778 6.65364 6.71525 7.46775 7.48023 7.74896 7.98442 8.13766 8.38696 9.06933 9.58570 10.63906 10.82567 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.043576 B = 0.005132 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.398824 B = 5454.232152 C = 5522.258682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.583 6.583 11 N -0.757 5.757 12 C 0.179 3.821 13 C -0.123 4.123 14 C -0.074 4.074 15 C -0.157 4.157 16 C 0.113 3.887 17 O -0.499 6.499 18 C -0.176 4.176 19 C 0.138 3.862 20 O -0.485 6.485 21 H 0.267 0.733 22 H 0.381 0.619 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.134 0.866 26 H 0.129 0.871 27 H 0.388 0.612 28 H 0.132 0.868 29 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.887 -15.936 0.680 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.360 3.640 10 O -0.466 6.466 11 N -0.413 5.413 12 C 0.054 3.946 13 C -0.124 4.124 14 C -0.093 4.093 15 C -0.175 4.175 16 C 0.069 3.931 17 O -0.309 6.309 18 C -0.195 4.195 19 C 0.092 3.908 20 O -0.295 6.295 21 H 0.078 0.922 22 H 0.213 0.787 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.152 0.848 26 H 0.147 0.853 27 H 0.244 0.756 28 H 0.150 0.850 29 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.670 -15.019 0.422 16.060 hybrid contribution 0.288 0.048 0.286 0.408 sum 5.957 -14.972 0.708 16.129 Atomic orbital electron populations 1.70033 1.07042 1.27073 1.35698 1.25709 0.94616 1.00272 0.92618 0.86321 0.80551 0.81751 0.78154 1.18767 1.20196 1.20174 1.20921 0.93645 0.89319 1.54122 0.91403 1.18228 0.87162 0.82355 0.76225 1.90589 1.14098 1.86784 1.55152 1.46111 1.08609 1.03986 1.82559 1.19607 0.91810 0.82037 1.01158 1.20674 0.99796 0.98846 0.93042 1.20943 0.96429 0.94216 0.97684 1.21399 0.98202 0.99875 0.98050 1.18218 0.91476 0.91289 0.92155 1.84836 1.34350 1.17099 1.94600 1.21645 1.01152 0.97936 0.98772 1.18148 0.95274 0.91008 0.86343 1.84905 1.54892 1.56409 1.33267 0.92225 0.78720 0.92561 0.92590 0.84839 0.85283 0.75631 0.84980 0.75383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.47 11.83 55.55 0.66 -22.81 15 2 C 0.09 2.49 5.50 -17.37 -0.10 2.39 15 3 Si 0.91 20.62 29.56 -169.99 -5.02 15.59 15 4 H -0.26 -5.81 7.11 56.52 0.40 -5.41 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.54 -15.82 9.54 -35.63 -0.34 -16.16 15 8 H 0.07 1.84 7.85 -52.49 -0.41 1.43 15 9 C 0.56 16.26 7.75 -12.99 -0.10 16.16 15 10 O -0.58 -19.17 15.02 5.20 0.08 -19.09 15 11 N -0.76 -17.74 5.54 -62.90 -0.35 -18.08 15 12 C 0.18 3.50 5.46 -5.19 -0.03 3.47 15 13 C -0.12 -1.90 5.26 -104.44 -0.55 -2.45 15 14 C -0.07 -0.99 9.66 -39.62 -0.38 -1.37 15 15 C -0.16 -1.85 9.98 -39.40 -0.39 -2.25 15 16 C 0.11 1.35 6.70 -39.24 -0.26 1.09 15 17 O -0.50 -5.07 13.50 -19.41 -0.26 -5.34 15 18 C -0.18 -2.23 9.93 -39.29 -0.39 -2.62 15 19 C 0.14 2.00 6.67 -39.24 -0.26 1.74 15 20 O -0.48 -7.11 12.73 -19.41 -0.25 -7.36 15 21 H 0.27 7.35 8.29 -40.82 -0.34 7.01 15 22 H 0.38 8.35 8.44 -40.82 -0.34 8.00 15 23 H 0.06 1.14 7.85 -51.93 -0.41 0.73 15 24 H 0.06 1.12 8.00 -51.93 -0.42 0.71 15 25 H 0.13 1.64 8.03 -52.49 -0.42 1.22 15 26 H 0.13 1.25 8.06 -52.49 -0.42 0.83 15 27 H 0.39 1.89 9.06 45.56 0.41 2.30 15 28 H 0.13 1.48 8.06 -52.49 -0.42 1.06 15 29 H 0.39 3.84 9.06 45.56 0.41 4.26 15 LS Contribution 268.66 15.07 4.05 4.05 Total: -1.00 -37.32 268.66 -5.06 -42.38 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -1.15 Total: 10.66 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.80 Total: 0.00 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.31 Total: -40.89 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.43 Total: -31.79 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -37.32 -5.06 -42.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643104164.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.359 kcal (2) G-P(sol) polarization free energy of solvation -37.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds