Wall clock time and date at job start Sun Mar 29 2020 22:18:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30666 * 1
3 3 Si 1.86805 * 119.99882 * 2 1
4 4 H 1.48505 * 109.46882 * 180.02562 * 3 2 1
5 5 H 1.48501 * 109.46723 * 299.99881 * 3 2 1
6 6 H 1.48501 * 109.47152 * 60.00246 * 3 2 1
7 7 C 1.40051 * 120.00364 * 180.02562 * 2 1 3
8 8 H 1.07993 * 120.00201 * 179.97438 * 7 2 1
9 9 C 1.46381 * 119.99693 * 359.97438 * 7 2 1
10 10 O 1.21685 * 119.99860 * 359.97438 * 9 7 2
11 11 N 1.34771 * 119.99614 * 180.02562 * 9 7 2
12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 7
13 13 C 1.50703 * 109.47064 * 179.97438 * 12 11 9
14 14 C 1.38201 * 119.96946 * 259.72665 * 13 12 11
15 15 C 1.38159 * 120.10530 * 179.72506 * 14 13 12
16 16 C 1.38797 * 120.05380 * 0.54673 * 15 14 13
17 17 O 1.35895 * 120.02778 * 179.70339 * 16 15 14
18 18 C 1.38607 * 119.94604 * 359.72797 * 16 15 14
19 19 C 1.38659 * 119.89398 * 359.97438 * 18 16 15
20 20 O 1.35896 * 120.03031 * 180.02562 * 19 18 16
21 21 H 0.97002 * 120.00059 * 359.97438 * 1 2 3
22 22 H 0.96996 * 120.00772 * 359.97438 * 11 9 7
23 23 H 1.09002 * 109.47068 * 299.99729 * 12 11 9
24 24 H 1.09001 * 109.47372 * 59.99816 * 12 11 9
25 25 H 1.07997 * 119.94944 * 359.97438 * 14 13 12
26 26 H 1.08001 * 119.97291 * 180.24636 * 15 14 13
27 27 H 0.96708 * 114.00316 * 270.02375 * 17 16 15
28 28 H 1.08001 * 120.05686 * 180.02562 * 18 16 15
29 29 H 0.96697 * 113.99904 * 269.97522 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2407 1.6178 0.0000
4 1 3.7007 1.3464 -0.0006
5 1 1.8818 2.3964 -1.2125
6 1 1.8819 2.3965 1.2125
7 6 2.0070 -1.2128 -0.0005
8 1 3.0869 -1.2128 -0.0010
9 6 1.2751 -2.4805 -0.0005
10 8 0.0583 -2.4805 0.0004
11 7 1.9490 -3.6476 -0.0005
12 6 1.2165 -4.9164 -0.0011
13 6 2.1959 -6.0619 -0.0016
14 6 2.4822 -6.7248 -1.1799
15 6 3.3839 -7.7716 -1.1847
16 6 3.9958 -8.1672 -0.0034
17 8 4.8781 -9.2009 -0.0076
18 6 3.7060 -7.5076 1.1807
19 6 2.8054 -6.4533 1.1818
20 8 2.5196 -5.8042 2.3410
21 1 -0.4850 0.8401 0.0004
22 1 2.9190 -3.6477 -0.0009
23 1 0.5896 -4.9744 0.8887
24 1 0.5902 -4.9740 -0.8913
25 1 2.0035 -6.4215 -2.0993
26 1 3.6091 -8.2856 -2.1074
27 1 4.4720 -10.0653 0.1442
28 1 4.1814 -7.8137 2.1008
29 1 1.7752 -6.1813 2.8297
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001643104164.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:18:23
Heat of formation + Delta-G solvation = -134.261639 kcal
Electronic energy + Delta-G solvation = -16012.892301 eV
Core-core repulsion = 13092.920221 eV
Total energy + Delta-G solvation = -2919.972079 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 237.083 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.20757 -39.36696 -38.72944 -36.90908 -35.16933 -34.40717 -31.58872 -30.83735
-28.56172 -26.18945 -23.79863 -22.67926 -21.65612 -20.02186 -19.35828 -18.04968
-17.51334 -17.37590 -16.95976 -16.32022 -16.01081 -15.68613 -15.14200 -14.95640
-14.58566 -14.25195 -13.77084 -13.30302 -13.21059 -12.85044 -12.79154 -12.66607
-12.55761 -11.98559 -11.66146 -11.57079 -10.95064 -10.03474 -9.83747 -9.50930
-9.42434 -8.29473 -6.86207 0.06983 0.22872 1.39670 1.39871 1.58082
2.24283 2.42616 2.46360 3.02753 3.35053 3.45603 3.60267 3.78154
3.86704 4.11664 4.36530 4.59841 4.70281 4.85325 4.92916 5.17891
5.31433 5.33161 5.51155 5.69588 5.86837 6.19117 6.26695 6.77239
6.85917 6.86424 7.51669 8.47636 8.66476
Molecular weight = 237.08amu
Principal moments of inertia in cm(-1)
A = 0.043576 B = 0.005132 C = 0.005069
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 642.398824 B = 5454.232152 C = 5522.258682
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.821 5.821
2 C 0.028 3.972
3 Si 0.999 3.001
4 H -0.250 1.250
5 H -0.266 1.266
6 H -0.267 1.267
7 C -0.574 4.574
8 H 0.083 0.917
9 C 0.540 3.460
10 O -0.632 6.632
11 N -0.746 5.746
12 C 0.184 3.816
13 C -0.145 4.145
14 C -0.073 4.073
15 C -0.153 4.153
16 C 0.129 3.871
17 O -0.503 6.503
18 C -0.179 4.179
19 C 0.133 3.867
20 O -0.506 6.506
21 H 0.275 0.725
22 H 0.390 0.610
23 H 0.042 0.958
24 H 0.045 0.955
25 H 0.140 0.860
26 H 0.156 0.844
27 H 0.415 0.585
28 H 0.147 0.853
29 H 0.407 0.593
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.130 -16.629 0.421 18.515
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.451 5.451
2 C -0.186 4.186
3 Si 0.818 3.182
4 H -0.173 1.173
5 H -0.191 1.191
6 H -0.192 1.192
7 C -0.610 4.610
8 H 0.101 0.899
9 C 0.344 3.656
10 O -0.519 6.519
11 N -0.399 5.399
12 C 0.060 3.940
13 C -0.146 4.146
14 C -0.091 4.091
15 C -0.171 4.171
16 C 0.084 3.916
17 O -0.317 6.317
18 C -0.198 4.198
19 C 0.088 3.912
20 O -0.318 6.318
21 H 0.085 0.915
22 H 0.222 0.778
23 H 0.060 0.940
24 H 0.064 0.936
25 H 0.158 0.842
26 H 0.174 0.826
27 H 0.275 0.725
28 H 0.165 0.835
29 H 0.266 0.734
Dipole moment (debyes) X Y Z Total
from point charges 7.938 -15.795 0.172 17.679
hybrid contribution -0.376 0.071 0.377 0.537
sum 7.562 -15.724 0.549 17.457
Atomic orbital electron populations
1.70185 1.09465 1.28927 1.36496 1.26977 0.95578 1.04915 0.91175
0.84956 0.79197 0.75327 0.78683 1.17296 1.19062 1.19177 1.21443
0.94584 0.90226 1.54798 0.89913 1.18586 0.86815 0.84200 0.76008
1.90538 1.16028 1.87923 1.57452 1.45813 1.08945 1.04258 1.80916
1.19557 0.92538 0.81991 0.99927 1.20331 1.00789 0.98756 0.94742
1.21039 0.96678 0.94343 0.97078 1.21615 0.97225 0.99083 0.99199
1.18276 0.90278 0.91270 0.91730 1.84774 1.34286 1.18159 1.94510
1.21753 1.00727 0.97350 0.99925 1.18241 0.95682 0.91498 0.85787
1.84842 1.55962 1.57398 1.33647 0.91485 0.77755 0.93978 0.93641
0.84210 0.82650 0.72537 0.83496 0.73404
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -51.29 11.83 21.84 0.26 -51.04 15
2 C 0.03 1.63 5.50 85.31 0.47 2.10 15
3 Si 1.00 42.15 29.56 68.60 2.03 44.18 15
4 H -0.25 -9.86 7.11 99.48 0.71 -9.16 15
5 H -0.27 -10.68 7.11 99.48 0.71 -9.98 15
6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15
7 C -0.57 -33.92 9.54 24.83 0.24 -33.68 15
8 H 0.08 4.47 7.85 -2.91 -0.02 4.45 15
9 C 0.54 32.63 7.75 86.36 0.67 33.30 15
10 O -0.63 -43.45 15.02 -4.30 -0.06 -43.51 15
11 N -0.75 -35.90 5.54 -471.13 -2.61 -38.51 15
12 C 0.18 7.47 5.46 85.63 0.47 7.94 15
13 C -0.15 -4.48 5.26 -19.75 -0.10 -4.58 15
14 C -0.07 -1.85 9.66 22.24 0.21 -1.64 15
15 C -0.15 -3.17 9.98 22.38 0.22 -2.94 15
16 C 0.13 2.69 6.70 22.49 0.15 2.84 15
17 O -0.50 -8.25 13.50 -92.37 -1.25 -9.50 15
18 C -0.18 -4.13 9.93 22.46 0.22 -3.91 15
19 C 0.13 3.76 6.67 22.49 0.15 3.91 15
20 O -0.51 -14.80 12.73 -92.38 -1.18 -15.97 15
21 H 0.28 15.44 8.29 -92.71 -0.77 14.67 15
22 H 0.39 17.28 8.44 -92.71 -0.78 16.50 15
23 H 0.04 1.80 7.85 -2.39 -0.02 1.78 15
24 H 0.05 1.91 8.00 -2.39 -0.02 1.89 15
25 H 0.14 3.30 8.03 -2.91 -0.02 3.28 15
26 H 0.16 2.40 8.06 -2.91 -0.02 2.38 15
27 H 0.41 2.28 9.06 -74.05 -0.67 1.60 15
28 H 0.15 2.92 8.06 -2.91 -0.02 2.89 15
29 H 0.41 8.09 9.06 -74.06 -0.67 7.42 15
Total: -1.00 -82.34 268.66 -1.02 -83.36
By element:
Atomic # 1 Polarization: 28.56 SS G_CDS: -0.90 Total: 27.66 kcal
Atomic # 6 Polarization: 0.64 SS G_CDS: 2.70 Total: 3.34 kcal
Atomic # 7 Polarization: -87.19 SS G_CDS: -2.35 Total: -89.55 kcal
Atomic # 8 Polarization: -66.50 SS G_CDS: -2.49 Total: -68.98 kcal
Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal
Total: -82.34 -1.02 -83.36 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001643104164.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.903 kcal
(2) G-P(sol) polarization free energy of solvation -82.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.245 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.359 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.262 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds