Wall clock time and date at job start Sun Mar 29 2020 22:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86805 * 119.99882 * 2 1 4 4 H 1.48505 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46723 * 299.99881 * 3 2 1 6 6 H 1.48501 * 109.47152 * 60.00246 * 3 2 1 7 7 C 1.40051 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.46381 * 119.99693 * 359.97438 * 7 2 1 10 10 O 1.21685 * 119.99860 * 359.97438 * 9 7 2 11 11 N 1.34771 * 119.99614 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47064 * 179.97438 * 12 11 9 14 14 C 1.38201 * 119.96946 * 259.72665 * 13 12 11 15 15 C 1.38159 * 120.10530 * 179.72506 * 14 13 12 16 16 C 1.38797 * 120.05380 * 0.54673 * 15 14 13 17 17 O 1.35895 * 120.02778 * 179.70339 * 16 15 14 18 18 C 1.38607 * 119.94604 * 359.72797 * 16 15 14 19 19 C 1.38659 * 119.89398 * 359.97438 * 18 16 15 20 20 O 1.35896 * 120.03031 * 180.02562 * 19 18 16 21 21 H 0.97002 * 120.00059 * 359.97438 * 1 2 3 22 22 H 0.96996 * 120.00772 * 359.97438 * 11 9 7 23 23 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 24 24 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 25 25 H 1.07997 * 119.94944 * 359.97438 * 14 13 12 26 26 H 1.08001 * 119.97291 * 180.24636 * 15 14 13 27 27 H 0.96708 * 114.00316 * 270.02375 * 17 16 15 28 28 H 1.08001 * 120.05686 * 180.02562 * 18 16 15 29 29 H 0.96697 * 113.99904 * 269.97522 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0583 -2.4805 0.0004 11 7 1.9490 -3.6476 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 6 2.1959 -6.0619 -0.0016 14 6 2.4822 -6.7248 -1.1799 15 6 3.3839 -7.7716 -1.1847 16 6 3.9958 -8.1672 -0.0034 17 8 4.8781 -9.2009 -0.0076 18 6 3.7060 -7.5076 1.1807 19 6 2.8054 -6.4533 1.1818 20 8 2.5196 -5.8042 2.3410 21 1 -0.4850 0.8401 0.0004 22 1 2.9190 -3.6477 -0.0009 23 1 0.5896 -4.9744 0.8887 24 1 0.5902 -4.9740 -0.8913 25 1 2.0035 -6.4215 -2.0993 26 1 3.6091 -8.2856 -2.1074 27 1 4.4720 -10.0653 0.1442 28 1 4.1814 -7.8137 2.1008 29 1 1.7752 -6.1813 2.8297 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643104164.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:23 Heat of formation + Delta-G solvation = -134.261639 kcal Electronic energy + Delta-G solvation = -16012.892301 eV Core-core repulsion = 13092.920221 eV Total energy + Delta-G solvation = -2919.972079 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.20757 -39.36696 -38.72944 -36.90908 -35.16933 -34.40717 -31.58872 -30.83735 -28.56172 -26.18945 -23.79863 -22.67926 -21.65612 -20.02186 -19.35828 -18.04968 -17.51334 -17.37590 -16.95976 -16.32022 -16.01081 -15.68613 -15.14200 -14.95640 -14.58566 -14.25195 -13.77084 -13.30302 -13.21059 -12.85044 -12.79154 -12.66607 -12.55761 -11.98559 -11.66146 -11.57079 -10.95064 -10.03474 -9.83747 -9.50930 -9.42434 -8.29473 -6.86207 0.06983 0.22872 1.39670 1.39871 1.58082 2.24283 2.42616 2.46360 3.02753 3.35053 3.45603 3.60267 3.78154 3.86704 4.11664 4.36530 4.59841 4.70281 4.85325 4.92916 5.17891 5.31433 5.33161 5.51155 5.69588 5.86837 6.19117 6.26695 6.77239 6.85917 6.86424 7.51669 8.47636 8.66476 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.043576 B = 0.005132 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.398824 B = 5454.232152 C = 5522.258682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.540 3.460 10 O -0.632 6.632 11 N -0.746 5.746 12 C 0.184 3.816 13 C -0.145 4.145 14 C -0.073 4.073 15 C -0.153 4.153 16 C 0.129 3.871 17 O -0.503 6.503 18 C -0.179 4.179 19 C 0.133 3.867 20 O -0.506 6.506 21 H 0.275 0.725 22 H 0.390 0.610 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.140 0.860 26 H 0.156 0.844 27 H 0.415 0.585 28 H 0.147 0.853 29 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.130 -16.629 0.421 18.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.173 1.173 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.610 4.610 8 H 0.101 0.899 9 C 0.344 3.656 10 O -0.519 6.519 11 N -0.399 5.399 12 C 0.060 3.940 13 C -0.146 4.146 14 C -0.091 4.091 15 C -0.171 4.171 16 C 0.084 3.916 17 O -0.317 6.317 18 C -0.198 4.198 19 C 0.088 3.912 20 O -0.318 6.318 21 H 0.085 0.915 22 H 0.222 0.778 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.158 0.842 26 H 0.174 0.826 27 H 0.275 0.725 28 H 0.165 0.835 29 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 7.938 -15.795 0.172 17.679 hybrid contribution -0.376 0.071 0.377 0.537 sum 7.562 -15.724 0.549 17.457 Atomic orbital electron populations 1.70185 1.09465 1.28927 1.36496 1.26977 0.95578 1.04915 0.91175 0.84956 0.79197 0.75327 0.78683 1.17296 1.19062 1.19177 1.21443 0.94584 0.90226 1.54798 0.89913 1.18586 0.86815 0.84200 0.76008 1.90538 1.16028 1.87923 1.57452 1.45813 1.08945 1.04258 1.80916 1.19557 0.92538 0.81991 0.99927 1.20331 1.00789 0.98756 0.94742 1.21039 0.96678 0.94343 0.97078 1.21615 0.97225 0.99083 0.99199 1.18276 0.90278 0.91270 0.91730 1.84774 1.34286 1.18159 1.94510 1.21753 1.00727 0.97350 0.99925 1.18241 0.95682 0.91498 0.85787 1.84842 1.55962 1.57398 1.33647 0.91485 0.77755 0.93978 0.93641 0.84210 0.82650 0.72537 0.83496 0.73404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.29 11.83 21.84 0.26 -51.04 15 2 C 0.03 1.63 5.50 85.31 0.47 2.10 15 3 Si 1.00 42.15 29.56 68.60 2.03 44.18 15 4 H -0.25 -9.86 7.11 99.48 0.71 -9.16 15 5 H -0.27 -10.68 7.11 99.48 0.71 -9.98 15 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 7 C -0.57 -33.92 9.54 24.83 0.24 -33.68 15 8 H 0.08 4.47 7.85 -2.91 -0.02 4.45 15 9 C 0.54 32.63 7.75 86.36 0.67 33.30 15 10 O -0.63 -43.45 15.02 -4.30 -0.06 -43.51 15 11 N -0.75 -35.90 5.54 -471.13 -2.61 -38.51 15 12 C 0.18 7.47 5.46 85.63 0.47 7.94 15 13 C -0.15 -4.48 5.26 -19.75 -0.10 -4.58 15 14 C -0.07 -1.85 9.66 22.24 0.21 -1.64 15 15 C -0.15 -3.17 9.98 22.38 0.22 -2.94 15 16 C 0.13 2.69 6.70 22.49 0.15 2.84 15 17 O -0.50 -8.25 13.50 -92.37 -1.25 -9.50 15 18 C -0.18 -4.13 9.93 22.46 0.22 -3.91 15 19 C 0.13 3.76 6.67 22.49 0.15 3.91 15 20 O -0.51 -14.80 12.73 -92.38 -1.18 -15.97 15 21 H 0.28 15.44 8.29 -92.71 -0.77 14.67 15 22 H 0.39 17.28 8.44 -92.71 -0.78 16.50 15 23 H 0.04 1.80 7.85 -2.39 -0.02 1.78 15 24 H 0.05 1.91 8.00 -2.39 -0.02 1.89 15 25 H 0.14 3.30 8.03 -2.91 -0.02 3.28 15 26 H 0.16 2.40 8.06 -2.91 -0.02 2.38 15 27 H 0.41 2.28 9.06 -74.05 -0.67 1.60 15 28 H 0.15 2.92 8.06 -2.91 -0.02 2.89 15 29 H 0.41 8.09 9.06 -74.06 -0.67 7.42 15 Total: -1.00 -82.34 268.66 -1.02 -83.36 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -0.90 Total: 27.66 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 2.70 Total: 3.34 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -2.35 Total: -89.55 kcal Atomic # 8 Polarization: -66.50 SS G_CDS: -2.49 Total: -68.98 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -82.34 -1.02 -83.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643104164.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.903 kcal (2) G-P(sol) polarization free energy of solvation -82.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds