Wall clock time and date at job start Sun Mar 29 2020 21:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35311 * 125.86876 * 2 1 4 4 C 1.35353 * 106.17059 * 180.18908 * 3 2 1 5 5 C 1.50700 * 126.74989 * 179.85806 * 4 3 2 6 6 H 1.09001 * 109.49592 * 204.64467 * 5 4 3 7 7 C 1.53033 * 109.50219 * 84.54006 * 5 4 3 8 8 C 1.53044 * 109.53734 * 178.68402 * 7 5 4 9 9 C 1.52761 * 109.38356 * 61.24440 * 8 7 5 10 10 N 1.46932 * 109.00441 * 305.58599 * 9 8 7 11 11 C 1.36936 * 120.62484 * 233.58057 * 10 9 8 12 12 H 1.08003 * 119.99356 * 151.81679 * 11 10 9 13 13 C 1.38803 * 120.00756 * 331.82023 * 11 10 9 14 14 N 1.31618 * 119.99736 * 335.49342 * 13 11 10 15 15 Si 1.86799 * 120.00355 * 155.49660 * 13 11 10 16 16 H 1.48498 * 109.47329 * 180.02562 * 15 13 11 17 17 H 1.48495 * 109.47105 * 59.99889 * 15 13 11 18 18 H 1.48503 * 109.46825 * 299.99639 * 15 13 11 19 19 C 1.46922 * 118.73835 * 53.31141 * 10 9 8 20 20 N 1.33770 * 106.49987 * 359.58380 * 4 3 2 21 21 N 1.28639 * 108.88607 * 0.26931 * 20 4 3 22 22 H 1.08999 * 109.47258 * 270.29484 * 1 2 3 23 23 H 1.09004 * 109.47230 * 30.29644 * 1 2 3 24 24 H 1.09003 * 109.47091 * 150.29796 * 1 2 3 25 25 H 1.07992 * 126.91442 * 0.03544 * 3 2 1 26 26 H 1.09003 * 109.46353 * 298.70620 * 7 5 4 27 27 H 1.09004 * 109.45899 * 58.66611 * 7 5 4 28 28 H 1.09006 * 109.49810 * 181.31953 * 8 7 5 29 29 H 1.09002 * 109.49850 * 301.38294 * 8 7 5 30 30 H 1.09003 * 109.50983 * 185.70669 * 9 8 7 31 31 H 1.08993 * 109.43265 * 65.42107 * 9 8 7 32 32 H 0.97002 * 120.00481 * 354.24867 * 14 13 11 33 33 H 1.08999 * 109.58741 * 66.42770 * 19 10 9 34 34 H 1.09001 * 109.58687 * 186.71032 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5322 0.6403 -0.0043 5 6 4.7881 1.4732 -0.0090 6 1 5.6059 0.8958 -0.4401 7 6 5.1430 1.8705 1.4256 8 6 6.4363 2.6888 1.4249 9 6 6.2300 3.9625 0.6071 10 7 5.7451 3.5985 -0.7313 11 6 6.3892 4.0485 -1.8528 12 1 6.3552 3.4694 -2.7638 13 6 7.0857 5.2486 -1.8188 14 7 6.7621 6.1726 -0.9391 15 14 8.4822 5.5525 -3.0216 16 1 9.0596 6.8991 -2.7799 17 1 7.9638 5.4779 -4.4111 18 1 9.5340 4.5218 -2.8296 19 6 4.5598 2.7377 -0.8432 20 7 3.4576 -0.6953 0.0026 21 7 2.2191 -1.0432 0.0050 22 1 -0.3634 0.0053 1.0276 23 1 -0.3634 0.8873 -0.5184 24 1 -0.3633 -0.8927 -0.5092 25 1 1.9382 2.1280 0.0005 26 1 4.3351 2.4686 1.8473 27 1 5.2819 0.9723 2.0273 28 1 6.7011 2.9515 2.4491 29 1 7.2392 2.1000 0.9812 30 1 7.1763 4.4966 0.5202 31 1 5.4945 4.5962 1.1024 32 1 5.9855 6.0506 -0.3709 33 1 3.6852 3.2696 -0.4686 34 1 4.4028 2.4660 -1.8871 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001648590651.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:50 Heat of formation + Delta-G solvation = 111.170753 kcal Electronic energy + Delta-G solvation = -16875.180152 eV Core-core repulsion = 14231.695327 eV Total energy + Delta-G solvation = -2643.484824 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.10157 -37.84295 -34.75975 -33.54809 -31.59872 -30.31035 -28.77912 -27.85581 -25.07196 -23.35675 -22.19672 -21.68482 -20.64003 -18.92744 -17.49673 -16.98284 -16.49233 -14.79242 -14.58358 -14.13055 -13.78892 -13.62259 -13.52786 -13.33168 -13.19321 -12.79411 -12.26554 -11.91970 -11.49194 -11.05354 -10.81564 -10.68350 -10.32478 -10.26389 -10.08560 -10.01877 -9.87011 -9.80890 -9.26239 -8.88732 -8.34700 -6.87096 -6.04977 -3.21838 1.70289 2.41563 2.74631 3.51860 3.55873 3.73310 4.33121 4.54651 4.67038 4.76017 5.01476 5.04729 5.29966 5.34916 5.50679 5.54831 5.64514 5.71610 5.79940 6.10971 6.21768 6.28361 6.41515 6.52507 6.56511 6.64791 6.70869 6.77721 6.84431 7.14603 7.23874 8.02988 8.59839 8.66250 9.13155 9.86446 10.30486 11.23610 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.040298 B = 0.006013 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.657197 B = 4655.771271 C = 4860.306236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.300 5.300 3 C -0.051 4.051 4 C 0.006 3.994 5 C -0.023 4.023 6 H 0.086 0.914 7 C -0.095 4.095 8 C -0.137 4.137 9 C 0.148 3.852 10 N -0.596 5.596 11 C -0.349 4.349 12 H 0.056 0.944 13 C -0.023 4.023 14 N -0.916 5.916 15 Si 1.064 2.936 16 H -0.286 1.286 17 H -0.293 1.293 18 H -0.293 1.293 19 C 0.161 3.839 20 N -0.270 5.270 21 N -0.098 5.098 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.190 0.810 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.017 0.983 32 H 0.269 0.731 33 H 0.016 0.984 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.251 -8.118 3.836 14.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.094 5.094 3 C -0.201 4.201 4 C -0.132 4.132 5 C -0.045 4.045 6 H 0.104 0.896 7 C -0.134 4.134 8 C -0.176 4.176 9 C 0.022 3.978 10 N -0.320 5.320 11 C -0.478 4.478 12 H 0.074 0.926 13 C -0.225 4.225 14 N -0.557 5.557 15 Si 0.893 3.107 16 H -0.211 1.211 17 H -0.220 1.220 18 H -0.220 1.220 19 C 0.034 3.966 20 N -0.136 5.136 21 N -0.077 5.077 22 H 0.106 0.894 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.207 0.793 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.034 0.966 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.052 -8.572 3.372 13.634 hybrid contribution -1.618 -0.006 0.411 1.670 sum -11.670 -8.578 3.783 14.970 Atomic orbital electron populations 1.22191 0.73239 1.05678 1.04648 1.47180 1.09097 1.05137 1.48035 1.23430 0.91086 0.94475 1.11079 1.22205 0.95648 0.90861 1.04531 1.20140 0.91115 0.95467 0.97794 0.89587 1.21393 0.98195 0.98927 0.94852 1.22014 0.96801 0.99293 0.99519 1.20905 0.99161 0.92980 0.84713 1.44072 1.28452 1.57361 1.02083 1.19977 1.32076 1.04172 0.91623 0.92647 1.25826 1.03458 0.90815 1.02352 1.70780 1.28106 1.32201 1.24567 0.83543 0.76305 0.75866 0.74937 1.21107 1.22010 1.22000 1.20861 0.89696 0.88865 0.97159 1.75044 1.09114 1.12590 1.16871 1.78232 0.96703 1.12282 1.20505 0.89397 0.88420 0.88322 0.79332 0.92786 0.93144 0.92832 0.92155 0.90246 0.96550 0.92037 0.96575 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 11.39 59.85 0.68 1.24 16 2 N -0.30 -3.85 3.74 -68.06 -0.25 -4.10 16 3 C -0.05 -0.71 10.78 -17.05 -0.18 -0.89 16 4 C 0.01 0.10 6.16 -82.78 -0.51 -0.41 16 5 C -0.02 -0.42 2.80 -91.65 -0.26 -0.68 16 6 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 7 C -0.10 -1.67 5.15 -26.69 -0.14 -1.81 16 8 C -0.14 -2.62 6.06 -26.83 -0.16 -2.78 16 9 C 0.15 3.43 4.66 -3.93 -0.02 3.41 16 10 N -0.60 -14.81 2.85 -172.58 -0.49 -15.31 16 11 C -0.35 -9.72 9.49 -15.06 -0.14 -9.87 16 12 H 0.06 1.56 7.94 -52.48 -0.42 1.14 16 13 C -0.02 -0.64 4.69 -17.43 -0.08 -0.72 16 14 N -0.92 -27.17 12.42 55.49 0.69 -26.48 16 15 Si 1.06 25.19 29.98 -169.99 -5.10 20.10 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.16 3.36 5.51 -3.71 -0.02 3.34 16 20 N -0.27 -4.98 12.41 33.29 0.41 -4.57 16 21 N -0.10 -1.60 13.17 60.35 0.79 -0.81 16 22 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.19 2.15 7.36 -52.49 -0.39 1.76 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.08 2.07 6.32 -51.93 -0.33 1.74 16 31 H 0.02 0.38 7.86 -51.93 -0.41 -0.02 16 32 H 0.27 7.99 6.69 -40.82 -0.27 7.72 16 33 H 0.02 0.32 7.13 -51.93 -0.37 -0.05 16 34 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 278.94 15.07 4.20 4.20 Total: -1.00 -33.12 278.94 -5.35 -38.47 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.77 Total: -2.34 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -0.83 Total: -9.17 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 1.15 Total: -51.27 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.10 Total: 20.10 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.12 -5.35 -38.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648590651.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.640 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds