Wall clock time and date at job start Sun Mar 29 2020 21:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35311 * 125.86876 * 2 1 4 4 C 1.35353 * 106.17059 * 180.18908 * 3 2 1 5 5 C 1.50700 * 126.74989 * 179.85806 * 4 3 2 6 6 H 1.09001 * 109.49592 * 204.64467 * 5 4 3 7 7 C 1.53033 * 109.50219 * 84.54006 * 5 4 3 8 8 C 1.53044 * 109.53734 * 178.68402 * 7 5 4 9 9 C 1.52761 * 109.38356 * 61.24440 * 8 7 5 10 10 N 1.46932 * 109.00441 * 305.58599 * 9 8 7 11 11 C 1.36936 * 120.62484 * 233.58057 * 10 9 8 12 12 H 1.08003 * 119.99356 * 151.81679 * 11 10 9 13 13 C 1.38803 * 120.00756 * 331.82023 * 11 10 9 14 14 N 1.31618 * 119.99736 * 335.49342 * 13 11 10 15 15 Si 1.86799 * 120.00355 * 155.49660 * 13 11 10 16 16 H 1.48498 * 109.47329 * 180.02562 * 15 13 11 17 17 H 1.48495 * 109.47105 * 59.99889 * 15 13 11 18 18 H 1.48503 * 109.46825 * 299.99639 * 15 13 11 19 19 C 1.46922 * 118.73835 * 53.31141 * 10 9 8 20 20 N 1.33770 * 106.49987 * 359.58380 * 4 3 2 21 21 N 1.28639 * 108.88607 * 0.26931 * 20 4 3 22 22 H 1.08999 * 109.47258 * 270.29484 * 1 2 3 23 23 H 1.09004 * 109.47230 * 30.29644 * 1 2 3 24 24 H 1.09003 * 109.47091 * 150.29796 * 1 2 3 25 25 H 1.07992 * 126.91442 * 0.03544 * 3 2 1 26 26 H 1.09003 * 109.46353 * 298.70620 * 7 5 4 27 27 H 1.09004 * 109.45899 * 58.66611 * 7 5 4 28 28 H 1.09006 * 109.49810 * 181.31953 * 8 7 5 29 29 H 1.09002 * 109.49850 * 301.38294 * 8 7 5 30 30 H 1.09003 * 109.50983 * 185.70669 * 9 8 7 31 31 H 1.08993 * 109.43265 * 65.42107 * 9 8 7 32 32 H 0.97002 * 120.00481 * 354.24867 * 14 13 11 33 33 H 1.08999 * 109.58741 * 66.42770 * 19 10 9 34 34 H 1.09001 * 109.58687 * 186.71032 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5322 0.6403 -0.0043 5 6 4.7881 1.4732 -0.0090 6 1 5.6059 0.8958 -0.4401 7 6 5.1430 1.8705 1.4256 8 6 6.4363 2.6888 1.4249 9 6 6.2300 3.9625 0.6071 10 7 5.7451 3.5985 -0.7313 11 6 6.3892 4.0485 -1.8528 12 1 6.3552 3.4694 -2.7638 13 6 7.0857 5.2486 -1.8188 14 7 6.7621 6.1726 -0.9391 15 14 8.4822 5.5525 -3.0216 16 1 9.0596 6.8991 -2.7799 17 1 7.9638 5.4779 -4.4111 18 1 9.5340 4.5218 -2.8296 19 6 4.5598 2.7377 -0.8432 20 7 3.4576 -0.6953 0.0026 21 7 2.2191 -1.0432 0.0050 22 1 -0.3634 0.0053 1.0276 23 1 -0.3634 0.8873 -0.5184 24 1 -0.3633 -0.8927 -0.5092 25 1 1.9382 2.1280 0.0005 26 1 4.3351 2.4686 1.8473 27 1 5.2819 0.9723 2.0273 28 1 6.7011 2.9515 2.4491 29 1 7.2392 2.1000 0.9812 30 1 7.1763 4.4966 0.5202 31 1 5.4945 4.5962 1.1024 32 1 5.9855 6.0506 -0.3709 33 1 3.6852 3.2696 -0.4686 34 1 4.4028 2.4660 -1.8871 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001648590651.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:50 Heat of formation + Delta-G solvation = 89.098902 kcal Electronic energy + Delta-G solvation = -16876.137259 eV Core-core repulsion = 14231.695327 eV Total energy + Delta-G solvation = -2644.441932 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.24948 -39.51820 -36.05732 -35.11136 -33.10091 -32.19084 -30.14847 -28.73308 -27.03113 -24.80332 -23.92193 -22.87648 -22.04477 -20.57064 -19.34977 -18.14163 -17.51836 -16.32517 -16.01868 -15.92711 -15.41361 -15.24418 -14.89968 -14.74751 -14.15822 -13.91782 -13.75842 -13.44301 -12.98973 -12.69212 -12.50056 -12.26771 -11.90843 -11.85199 -11.77278 -11.66591 -11.56222 -11.16844 -10.95614 -10.47127 -10.09823 -8.90447 -8.22093 -5.37699 0.61472 1.47216 1.56791 1.60589 1.67688 1.86650 2.66553 3.16383 3.30636 3.63106 3.73416 3.99532 4.03948 4.07794 4.22622 4.29281 4.34247 4.51089 4.54453 4.62636 4.73569 4.82088 4.84963 4.97786 5.12357 5.14701 5.20173 5.27603 5.32310 5.54260 5.68783 5.86435 6.43729 7.08961 7.48026 7.80202 8.24080 9.03508 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.040298 B = 0.006013 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.657197 B = 4655.771271 C = 4860.306236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.285 5.285 3 C -0.035 4.035 4 C -0.019 4.019 5 C -0.008 4.008 6 H 0.059 0.941 7 C -0.087 4.087 8 C -0.127 4.127 9 C 0.154 3.846 10 N -0.616 5.616 11 C -0.358 4.358 12 H 0.046 0.954 13 C -0.069 4.069 14 N -0.940 5.940 15 Si 1.111 2.889 16 H -0.290 1.290 17 H -0.277 1.277 18 H -0.283 1.283 19 C 0.164 3.836 20 N -0.308 5.308 21 N -0.116 5.116 22 H 0.111 0.889 23 H 0.126 0.874 24 H 0.110 0.890 25 H 0.219 0.781 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.014 0.986 32 H 0.257 0.743 33 H 0.036 0.964 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.898 -8.512 4.225 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.079 5.079 3 C -0.187 4.187 4 C -0.159 4.159 5 C -0.030 4.030 6 H 0.078 0.922 7 C -0.125 4.125 8 C -0.166 4.166 9 C 0.028 3.972 10 N -0.340 5.340 11 C -0.487 4.487 12 H 0.063 0.937 13 C -0.266 4.266 14 N -0.582 5.582 15 Si 0.936 3.064 16 H -0.215 1.215 17 H -0.203 1.203 18 H -0.210 1.210 19 C 0.038 3.962 20 N -0.174 5.174 21 N -0.096 5.096 22 H 0.129 0.871 23 H 0.145 0.855 24 H 0.128 0.872 25 H 0.235 0.765 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.032 0.968 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.748 -9.021 3.769 15.284 hybrid contribution -1.253 0.084 0.292 1.289 sum -13.001 -8.937 4.061 16.291 Atomic orbital electron populations 1.22769 0.69566 1.07792 1.06849 1.47635 1.11020 1.03941 1.45350 1.23758 0.90103 0.95828 1.08993 1.22002 0.96180 0.90723 1.06948 1.19778 0.91387 0.94106 0.97768 0.92208 1.21331 0.97526 0.99258 0.94397 1.21890 0.97519 0.97223 0.99994 1.20792 0.97198 0.94502 0.84692 1.44287 1.29934 1.57886 1.01917 1.20177 1.32300 1.03891 0.92373 0.93666 1.27071 1.05316 0.90768 1.03473 1.70887 1.28316 1.33163 1.25810 0.82905 0.73994 0.75597 0.73931 1.21540 1.20264 1.20954 1.20917 0.88883 0.89272 0.97097 1.74979 1.10552 1.13405 1.18472 1.78138 0.96446 1.13477 1.21493 0.87093 0.85518 0.87152 0.76457 0.91305 0.91859 0.90229 0.93398 0.93794 0.96762 0.93316 0.94645 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 11.39 127.77 1.46 2.10 16 2 N -0.28 -6.48 3.74 -369.23 -1.38 -7.86 16 3 C -0.04 -0.89 10.78 83.49 0.90 0.01 16 4 C -0.02 -0.63 6.16 41.60 0.26 -0.38 16 5 C -0.01 -0.29 2.80 -11.46 -0.03 -0.33 16 6 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 7 C -0.09 -2.90 5.15 30.62 0.16 -2.74 16 8 C -0.13 -4.75 6.06 30.53 0.19 -4.57 16 9 C 0.15 7.16 4.66 86.22 0.40 7.57 16 10 N -0.62 -30.86 2.85 -699.93 -2.00 -32.86 16 11 C -0.36 -20.20 9.49 84.03 0.80 -19.40 16 12 H 0.05 2.59 7.94 -2.91 -0.02 2.57 16 13 C -0.07 -3.95 4.69 84.86 0.40 -3.55 16 14 N -0.94 -56.63 12.42 21.65 0.27 -56.36 16 15 Si 1.11 51.19 29.98 68.60 2.06 53.25 16 16 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 C 0.16 6.76 5.51 86.36 0.48 7.23 16 20 N -0.31 -11.18 12.41 -48.60 -0.60 -11.78 16 21 N -0.12 -3.62 13.17 37.02 0.49 -3.13 16 22 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.13 0.51 8.14 -2.38 -0.02 0.49 16 24 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.22 4.05 7.36 -2.91 -0.02 4.03 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 2.34 6.32 -2.39 -0.02 2.33 16 31 H 0.01 0.67 7.86 -2.39 -0.02 0.65 16 32 H 0.26 15.61 6.69 -92.71 -0.62 14.99 16 33 H 0.04 1.33 7.13 -2.39 -0.02 1.31 16 34 H 0.04 1.84 7.93 -2.39 -0.02 1.82 16 Total: -1.00 -73.09 278.94 5.06 -68.03 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 1.23 Total: 4.77 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 5.00 Total: -14.06 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -3.23 Total: -112.00 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.06 Total: 53.25 kcal Total: -73.09 5.06 -68.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648590651.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.131 kcal (2) G-P(sol) polarization free energy of solvation -73.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds