Wall clock time and date at job start Sun Mar 29 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99872 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00070 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.50700 * 109.46769 * 179.72341 * 12 11 9 14 14 C 1.38292 * 119.99613 * 259.72004 * 13 12 11 15 15 C 1.38213 * 120.14085 * 179.72535 * 14 13 12 16 16 C 1.38281 * 120.14848 * 0.55132 * 15 14 13 17 17 C 1.38527 * 119.99912 * 359.72829 * 16 15 14 18 18 O 1.35995 * 120.07353 * 180.02562 * 17 16 15 19 19 C 1.38518 * 120.00412 * 79.99826 * 13 12 11 20 20 O 1.35998 * 120.07254 * 359.97438 * 19 13 12 21 21 H 0.96991 * 119.99824 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 23 23 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 24 24 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 25 25 H 1.07997 * 119.92912 * 359.97438 * 14 13 12 26 26 H 1.07999 * 119.92325 * 180.26324 * 15 14 13 27 27 H 1.08000 * 120.00130 * 179.74537 * 16 15 14 28 28 H 0.96696 * 114.00338 * 269.98365 * 18 17 16 29 29 H 0.96701 * 113.99656 * 89.99658 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 -0.0056 13 6 2.1960 -6.0618 -0.0111 14 6 2.4828 -6.7205 -1.1928 15 6 3.3848 -7.7676 -1.2023 16 6 3.9958 -8.1687 -0.0284 17 6 3.7085 -7.5168 1.1597 18 8 4.3089 -7.9097 2.3150 19 6 2.8045 -6.4585 1.1683 20 8 2.5196 -5.8151 2.3321 21 1 -0.4849 0.8400 -0.0004 22 1 2.9191 -3.6476 0.0002 23 1 0.5900 -4.9784 0.8842 24 1 0.5899 -4.9699 -0.8957 25 1 2.0040 -6.4133 -2.1108 26 1 3.6095 -8.2768 -2.1278 27 1 4.6972 -8.9899 -0.0379 28 1 3.8216 -8.5894 2.8002 29 1 1.7757 -6.1949 2.8195 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651175640.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:25 Heat of formation + Delta-G solvation = -100.808849 kcal Electronic energy + Delta-G solvation = -16137.935188 eV Core-core repulsion = 13219.413731 eV Total energy + Delta-G solvation = -2918.521457 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.23259 -37.47286 -36.73292 -36.44840 -33.43951 -32.28529 -30.31778 -29.14524 -26.80063 -24.87198 -22.50055 -21.49526 -19.61022 -18.62952 -17.81174 -17.11308 -16.20403 -15.98597 -15.29869 -14.73453 -14.34974 -14.28836 -13.89905 -13.39702 -12.83973 -12.44644 -12.22348 -12.07271 -11.65435 -11.37353 -11.21740 -11.07692 -10.84257 -10.41804 -10.19096 -10.03909 -8.82029 -8.79659 -8.54701 -7.55429 -7.44645 -6.14224 -4.58837 1.15950 1.18553 3.17786 3.24328 3.28635 3.49525 4.04354 4.16490 4.22510 4.63083 4.84569 4.94100 5.18217 5.29240 5.35750 5.66425 5.78971 5.84253 6.11658 6.23107 6.34329 6.37754 6.67575 6.71707 7.40863 7.48366 7.85287 7.98464 8.13614 8.38671 9.07206 9.58518 10.64264 10.82776 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.039071 B = 0.005488 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.465288 B = 5100.753207 C = 5249.456794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.583 6.583 11 N -0.757 5.757 12 C 0.178 3.822 13 C -0.101 4.101 14 C -0.098 4.098 15 C -0.116 4.116 16 C -0.136 4.136 17 C 0.072 3.928 18 O -0.489 6.489 19 C 0.097 3.903 20 O -0.476 6.476 21 H 0.268 0.732 22 H 0.382 0.618 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.383 0.617 29 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.934 -15.896 0.620 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.466 6.466 11 N -0.412 5.412 12 C 0.053 3.947 13 C -0.102 4.102 14 C -0.117 4.117 15 C -0.134 4.134 16 C -0.154 4.154 17 C 0.027 3.973 18 O -0.298 6.298 19 C 0.051 3.949 20 O -0.285 6.285 21 H 0.078 0.922 22 H 0.213 0.787 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.149 0.851 26 H 0.146 0.854 27 H 0.147 0.853 28 H 0.238 0.762 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 5.729 -15.002 0.319 16.062 hybrid contribution 0.254 0.079 0.344 0.435 sum 5.983 -14.923 0.663 16.091 Atomic orbital electron populations 1.70024 1.07037 1.27180 1.35593 1.25708 0.94623 1.00262 0.92616 0.86367 0.80201 0.81367 0.78784 1.19771 1.20474 1.18893 1.20882 0.93621 0.89318 1.54194 0.91445 1.18224 0.87161 0.82333 0.76230 1.90590 1.14082 1.86772 1.55188 1.46104 1.08623 1.03938 1.82579 1.19623 0.91803 0.82039 1.01213 1.20573 0.98709 0.98230 0.92656 1.21126 0.97726 0.95280 0.97577 1.21026 0.97035 0.97624 0.97763 1.21295 1.01160 1.00838 0.92150 1.18801 0.96476 0.95197 0.86815 1.84932 1.49449 1.60996 1.34387 1.18712 0.96103 0.93154 0.86930 1.84996 1.54627 1.56182 1.32723 0.92174 0.78692 0.92548 0.92453 0.85070 0.85390 0.85329 0.76213 0.76023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.52 11.83 55.55 0.66 -22.86 15 2 C 0.09 2.50 5.50 -17.36 -0.10 2.41 15 3 Si 0.91 20.70 29.56 -169.99 -5.02 15.67 15 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 15 6 H -0.26 -5.88 7.11 56.52 0.40 -5.48 15 7 C -0.54 -15.90 9.54 -35.63 -0.34 -16.24 15 8 H 0.07 1.83 7.85 -52.49 -0.41 1.42 15 9 C 0.56 16.36 7.75 -12.99 -0.10 16.26 15 10 O -0.58 -19.24 15.02 5.20 0.08 -19.16 15 11 N -0.76 -17.91 5.54 -62.90 -0.35 -18.26 15 12 C 0.18 3.52 5.46 -5.19 -0.03 3.49 15 13 C -0.10 -1.58 5.26 -104.50 -0.55 -2.13 15 14 C -0.10 -1.31 9.66 -39.57 -0.38 -1.69 15 15 C -0.12 -1.29 10.04 -39.57 -0.40 -1.69 15 16 C -0.14 -1.54 9.98 -39.46 -0.39 -1.93 15 17 C 0.07 0.95 6.72 -39.12 -0.26 0.68 15 18 O -0.49 -5.81 13.29 -34.21 -0.45 -6.26 15 19 C 0.10 1.46 6.69 -39.12 -0.26 1.20 15 20 O -0.48 -7.40 12.52 -34.22 -0.43 -7.83 15 21 H 0.27 7.40 8.29 -40.82 -0.34 7.06 15 22 H 0.38 8.47 8.44 -40.82 -0.34 8.13 15 23 H 0.06 1.16 7.85 -51.93 -0.41 0.75 15 24 H 0.06 1.15 8.00 -51.93 -0.42 0.74 15 25 H 0.13 1.60 8.03 -52.49 -0.42 1.18 15 26 H 0.13 1.06 8.06 -52.49 -0.42 0.64 15 27 H 0.13 1.16 8.06 -52.49 -0.42 0.74 15 28 H 0.38 2.47 9.06 45.56 0.41 2.88 15 29 H 0.38 4.07 9.06 45.56 0.41 4.49 15 LS Contribution 268.39 15.07 4.04 4.04 Total: -1.00 -37.76 268.39 -5.44 -43.20 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -1.15 Total: 11.09 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.81 Total: 0.37 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.31 Total: -41.12 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.81 Total: -33.26 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -37.76 -5.44 -43.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651175640.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.608 kcal (2) G-P(sol) polarization free energy of solvation -37.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds