Wall clock time and date at job start Sun Mar 29 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99872 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00070 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.50700 * 109.46769 * 179.72341 * 12 11 9 14 14 C 1.38292 * 119.99613 * 259.72004 * 13 12 11 15 15 C 1.38213 * 120.14085 * 179.72535 * 14 13 12 16 16 C 1.38281 * 120.14848 * 0.55132 * 15 14 13 17 17 C 1.38527 * 119.99912 * 359.72829 * 16 15 14 18 18 O 1.35995 * 120.07353 * 180.02562 * 17 16 15 19 19 C 1.38518 * 120.00412 * 79.99826 * 13 12 11 20 20 O 1.35998 * 120.07254 * 359.97438 * 19 13 12 21 21 H 0.96991 * 119.99824 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 23 23 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 24 24 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 25 25 H 1.07997 * 119.92912 * 359.97438 * 14 13 12 26 26 H 1.07999 * 119.92325 * 180.26324 * 15 14 13 27 27 H 1.08000 * 120.00130 * 179.74537 * 16 15 14 28 28 H 0.96696 * 114.00338 * 269.98365 * 18 17 16 29 29 H 0.96701 * 113.99656 * 89.99658 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 -0.0056 13 6 2.1960 -6.0618 -0.0111 14 6 2.4828 -6.7205 -1.1928 15 6 3.3848 -7.7676 -1.2023 16 6 3.9958 -8.1687 -0.0284 17 6 3.7085 -7.5168 1.1597 18 8 4.3089 -7.9097 2.3150 19 6 2.8045 -6.4585 1.1683 20 8 2.5196 -5.8151 2.3321 21 1 -0.4849 0.8400 -0.0004 22 1 2.9191 -3.6476 0.0002 23 1 0.5900 -4.9784 0.8842 24 1 0.5899 -4.9699 -0.8957 25 1 2.0040 -6.4133 -2.1108 26 1 3.6095 -8.2768 -2.1278 27 1 4.6972 -8.9899 -0.0379 28 1 3.8216 -8.5894 2.8002 29 1 1.7757 -6.1949 2.8195 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651175640.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:25 Heat of formation + Delta-G solvation = -133.179250 kcal Electronic energy + Delta-G solvation = -16139.338874 eV Core-core repulsion = 13219.413731 eV Total energy + Delta-G solvation = -2919.925143 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.29871 -39.34995 -37.97850 -37.55398 -35.27089 -34.45016 -31.77733 -30.15235 -28.76242 -26.54596 -23.50656 -22.73897 -21.67501 -19.83474 -19.15400 -18.70338 -17.48213 -17.28856 -17.08133 -16.09886 -16.00180 -15.59988 -15.25988 -15.14584 -14.45099 -13.96949 -13.55990 -13.29700 -13.23629 -12.93450 -12.78923 -12.65642 -12.60768 -12.22660 -12.02500 -11.11182 -10.94179 -10.10196 -9.65584 -9.54106 -9.48889 -8.30287 -6.87361 0.14159 0.18891 1.39089 1.41016 1.56461 2.24279 2.45305 2.50375 3.10191 3.23746 3.33727 3.59559 3.71701 4.02029 4.29394 4.33173 4.59457 4.62678 4.88945 4.90228 5.28062 5.30216 5.35518 5.50536 5.77590 5.85296 6.16817 6.24882 6.61521 6.84902 6.95194 7.49424 8.46081 8.65302 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.039071 B = 0.005488 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.465288 B = 5100.753207 C = 5249.456794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.029 3.971 3 Si 1.000 3.000 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.539 3.461 10 O -0.632 6.632 11 N -0.746 5.746 12 C 0.183 3.817 13 C -0.121 4.121 14 C -0.103 4.103 15 C -0.104 4.104 16 C -0.124 4.124 17 C 0.072 3.928 18 O -0.500 6.500 19 C 0.080 3.920 20 O -0.501 6.501 21 H 0.276 0.724 22 H 0.389 0.611 23 H 0.040 0.960 24 H 0.047 0.953 25 H 0.137 0.863 26 H 0.165 0.835 27 H 0.161 0.839 28 H 0.407 0.593 29 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.312 -16.745 0.116 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.819 3.181 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.611 4.611 8 H 0.101 0.899 9 C 0.344 3.656 10 O -0.519 6.519 11 N -0.399 5.399 12 C 0.059 3.941 13 C -0.122 4.122 14 C -0.122 4.122 15 C -0.121 4.121 16 C -0.142 4.142 17 C 0.026 3.974 18 O -0.312 6.312 19 C 0.034 3.966 20 O -0.313 6.313 21 H 0.085 0.915 22 H 0.222 0.778 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.155 0.845 26 H 0.183 0.817 27 H 0.178 0.822 28 H 0.265 0.735 29 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 8.131 -15.923 -0.171 17.880 hybrid contribution -0.470 0.175 0.533 0.732 sum 7.660 -15.749 0.362 17.517 Atomic orbital electron populations 1.70180 1.09461 1.29013 1.36335 1.26986 0.95596 1.04918 0.91146 0.84993 0.78636 0.74935 0.79539 1.18335 1.19485 1.17592 1.21411 0.94578 0.90228 1.54910 0.89942 1.18594 0.86830 0.84180 0.76033 1.90539 1.15991 1.87909 1.57490 1.45806 1.08921 1.04252 1.80956 1.19574 0.92581 0.82062 0.99898 1.20229 0.99525 0.98033 0.94408 1.21277 0.98336 0.95814 0.96773 1.21386 0.95244 0.96249 0.99251 1.21674 1.00606 1.00772 0.91158 1.18864 0.95731 0.94748 0.88020 1.84867 1.49895 1.62080 1.34387 1.18900 0.97161 0.94190 0.86320 1.84929 1.55654 1.57358 1.33322 0.91457 0.77799 0.94172 0.93444 0.84515 0.81720 0.82174 0.73484 0.74238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.45 11.83 21.84 0.26 -51.20 15 2 C 0.03 1.65 5.50 85.30 0.47 2.12 15 3 Si 1.00 42.36 29.56 68.60 2.03 44.39 15 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 15 6 H -0.25 -10.10 7.11 99.48 0.71 -9.39 15 7 C -0.57 -34.25 9.54 24.83 0.24 -34.02 15 8 H 0.08 4.49 7.85 -2.91 -0.02 4.47 15 9 C 0.54 32.94 7.75 86.36 0.67 33.61 15 10 O -0.63 -43.75 15.02 -4.33 -0.06 -43.82 15 11 N -0.75 -36.51 5.54 -471.15 -2.61 -39.12 15 12 C 0.18 7.57 5.46 85.63 0.47 8.04 15 13 C -0.12 -3.81 5.26 -19.78 -0.10 -3.91 15 14 C -0.10 -2.59 9.66 22.28 0.22 -2.37 15 15 C -0.10 -1.92 10.04 22.27 0.22 -1.70 15 16 C -0.12 -2.32 9.98 22.35 0.22 -2.10 15 17 C 0.07 1.72 6.72 22.57 0.15 1.87 15 18 O -0.50 -10.68 13.29 -79.65 -1.06 -11.74 15 19 C 0.08 2.38 6.69 22.57 0.15 2.53 15 20 O -0.50 -15.83 12.52 -79.68 -1.00 -16.83 15 21 H 0.28 15.55 8.29 -92.71 -0.77 14.78 15 22 H 0.39 17.65 8.44 -92.71 -0.78 16.87 15 23 H 0.04 1.76 7.85 -2.38 -0.02 1.74 15 24 H 0.05 2.02 8.00 -2.39 -0.02 2.00 15 25 H 0.14 3.19 8.03 -2.91 -0.02 3.17 15 26 H 0.17 1.88 8.06 -2.91 -0.02 1.86 15 27 H 0.16 2.04 8.06 -2.91 -0.02 2.02 15 28 H 0.41 4.21 9.06 -74.06 -0.67 3.54 15 29 H 0.40 8.83 9.06 -74.06 -0.67 8.16 15 Total: -1.00 -84.26 268.39 -0.65 -84.91 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.90 Total: 29.34 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 2.70 Total: 4.07 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -2.35 Total: -90.32 kcal Atomic # 8 Polarization: -70.26 SS G_CDS: -2.12 Total: -72.38 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -84.26 -0.65 -84.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651175640.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.271 kcal (2) G-P(sol) polarization free energy of solvation -84.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds