Wall clock time and date at job start Sun Mar 29 2020 22:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86801 * 119.99419 * 2 1 4 4 H 1.48499 * 109.46926 * 269.99726 * 3 2 1 5 5 H 1.48498 * 109.47577 * 30.00235 * 3 2 1 6 6 H 1.48502 * 109.46594 * 150.00257 * 3 2 1 7 7 C 1.40042 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00104 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00224 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00162 * 180.02562 * 9 7 2 12 12 C 1.46499 * 120.00307 * 179.97438 * 11 9 7 13 13 C 1.50703 * 109.47543 * 180.02562 * 12 11 9 14 14 C 1.38629 * 120.05295 * 89.99940 * 13 12 11 15 15 O 1.35896 * 120.02762 * 359.95948 * 14 13 12 16 16 C 1.38774 * 119.94420 * 180.23575 * 14 13 12 17 17 C 1.38170 * 120.05495 * 359.51127 * 16 14 13 18 18 C 1.38183 * 120.10967 * 0.46825 * 17 16 14 19 19 C 1.38636 * 120.05463 * 269.98175 * 13 12 11 20 20 O 1.35898 * 120.02605 * 359.97438 * 19 13 12 21 21 H 0.96999 * 120.00795 * 0.02562 * 1 2 3 22 22 H 0.97003 * 119.99916 * 0.02562 * 11 9 7 23 23 H 1.09002 * 109.47212 * 59.99998 * 12 11 9 24 24 H 1.09001 * 109.47382 * 300.00340 * 12 11 9 25 25 H 0.96700 * 114.00170 * 90.00033 * 15 14 13 26 26 H 1.07997 * 119.97089 * 179.74701 * 16 14 13 27 27 H 1.07997 * 119.95145 * 180.22919 * 17 16 14 28 28 H 1.08000 * 119.97312 * 179.76451 * 18 17 16 29 29 H 0.96705 * 113.99941 * 89.99906 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.4880 2.0465 -1.4001 5 1 1.4380 2.6527 0.7001 6 1 3.5381 1.4403 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2127 -0.0001 9 6 1.2752 -2.4804 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9491 -3.6476 -0.0005 12 6 1.2167 -4.9164 0.0000 13 6 2.1960 -6.0618 0.0005 14 6 2.6472 -6.5890 1.2007 15 8 2.2074 -6.0727 2.3783 16 6 3.5528 -7.6405 1.1985 17 6 3.9970 -8.1688 0.0016 18 6 3.5484 -7.6454 -1.1961 19 6 2.6470 -6.5904 -1.1992 20 8 2.2058 -6.0763 -2.3773 21 1 -0.4851 0.8400 -0.0004 22 1 2.9191 -3.6476 -0.0002 23 1 0.5897 -4.9744 -0.8897 24 1 0.5904 -4.9740 0.8902 25 1 1.4083 -6.4969 2.7198 26 1 3.9077 -8.0488 2.1333 27 1 4.6989 -8.9895 0.0019 28 1 3.9000 -8.0575 -2.1304 29 1 2.7494 -5.3531 -2.7190 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652626545.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:06 Heat of formation + Delta-G solvation = -100.797344 kcal Electronic energy + Delta-G solvation = -16290.760009 eV Core-core repulsion = 13372.239050 eV Total energy + Delta-G solvation = -2918.520959 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.16372 -37.66680 -37.09666 -35.61843 -33.55322 -32.30749 -30.27715 -29.24396 -26.75686 -24.81047 -22.48394 -21.40442 -19.63069 -18.78353 -17.37358 -17.20796 -16.24066 -15.79389 -15.27556 -14.86642 -14.58400 -14.13671 -13.87603 -13.18125 -13.12277 -12.45940 -12.20457 -12.02743 -11.74444 -11.29222 -11.12999 -10.85962 -10.54539 -10.48791 -10.31851 -10.19144 -8.82327 -8.76084 -8.55826 -7.54987 -7.44778 -6.15074 -4.60603 1.17612 1.20858 3.16094 3.22735 3.26518 3.48138 4.07110 4.14418 4.51976 4.62599 4.85315 4.98724 5.05489 5.19820 5.40365 5.74429 5.80896 5.82854 6.13436 6.31490 6.33910 6.47834 6.67227 6.71625 7.46368 7.70891 7.78147 7.95903 8.12206 8.36392 9.05608 9.57551 10.63617 10.82303 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.036264 B = 0.005953 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.931765 B = 4702.408075 C = 4855.980340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.581 6.581 11 N -0.758 5.758 12 C 0.180 3.820 13 C -0.144 4.144 14 C 0.136 3.864 15 O -0.488 6.488 16 C -0.160 4.160 17 C -0.092 4.092 18 C -0.160 4.160 19 C 0.136 3.864 20 O -0.493 6.493 21 H 0.268 0.732 22 H 0.378 0.622 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.390 0.610 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.303 -13.793 -0.042 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.463 6.463 11 N -0.414 5.414 12 C 0.055 3.945 13 C -0.146 4.146 14 C 0.090 3.910 15 O -0.298 6.298 16 C -0.179 4.179 17 C -0.111 4.111 18 C -0.179 4.179 19 C 0.091 3.909 20 O -0.304 6.304 21 H 0.079 0.921 22 H 0.209 0.791 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.247 0.753 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 7.226 -13.718 -0.039 15.505 hybrid contribution 0.914 0.791 0.036 1.210 sum 8.141 -12.927 -0.003 15.276 Atomic orbital electron populations 1.70021 1.07038 1.27206 1.35470 1.25703 0.94615 1.00248 0.92651 0.86374 0.80160 0.81438 0.78770 1.19776 1.20472 1.18942 1.20863 0.93525 0.89331 1.54426 0.91515 1.18225 0.87196 0.82299 0.76269 1.90597 1.14104 1.86707 1.54930 1.46121 1.08345 1.04142 1.82759 1.19524 0.91907 0.81546 1.01515 1.20941 1.01356 1.00033 0.92259 1.18208 0.95448 0.92333 0.84987 1.84878 1.47779 1.61964 1.35155 1.21412 1.00489 0.97021 0.98947 1.20827 0.99334 0.99440 0.91467 1.21415 0.98623 0.98886 0.98939 1.18190 0.93716 0.94004 0.85014 1.84755 1.55677 1.54792 1.35151 0.92141 0.79090 0.91886 0.92594 0.75330 0.85343 0.85402 0.85337 0.74706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.43 11.83 55.55 0.66 -22.77 15 2 C 0.09 2.48 5.50 -17.37 -0.10 2.39 15 3 Si 0.91 20.43 29.56 -169.99 -5.02 15.41 15 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.28 -6.16 7.11 56.52 0.40 -5.75 15 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 7 C -0.54 -15.69 9.54 -35.64 -0.34 -16.03 15 8 H 0.07 1.77 7.85 -52.49 -0.41 1.35 15 9 C 0.56 16.24 7.75 -12.99 -0.10 16.14 15 10 O -0.58 -19.26 15.02 5.20 0.08 -19.18 15 11 N -0.76 -17.66 5.54 -62.90 -0.35 -18.00 15 12 C 0.18 3.69 5.36 -5.19 -0.03 3.66 15 13 C -0.14 -2.36 5.27 -104.33 -0.55 -2.91 15 14 C 0.14 1.98 6.67 -39.24 -0.26 1.72 15 15 O -0.49 -7.16 12.55 -19.41 -0.24 -7.40 15 16 C -0.16 -1.90 9.98 -39.41 -0.39 -2.30 15 17 C -0.09 -0.98 10.04 -39.63 -0.40 -1.38 15 18 C -0.16 -1.90 9.98 -39.40 -0.39 -2.30 15 19 C 0.14 1.99 6.67 -39.24 -0.26 1.73 15 20 O -0.49 -7.25 12.55 -19.42 -0.24 -7.50 15 21 H 0.27 7.39 8.29 -40.82 -0.34 7.05 15 22 H 0.38 8.00 8.44 -40.82 -0.34 7.65 15 23 H 0.06 1.40 7.53 -51.93 -0.39 1.00 15 24 H 0.06 1.20 7.53 -51.93 -0.39 0.81 15 25 H 0.39 3.90 9.06 45.56 0.41 4.32 15 26 H 0.13 1.26 8.06 -52.49 -0.42 0.83 15 27 H 0.13 0.98 8.06 -52.49 -0.42 0.55 15 28 H 0.13 1.25 8.06 -52.49 -0.42 0.83 15 29 H 0.40 4.53 9.06 45.56 0.41 4.95 15 LS Contribution 267.08 15.07 4.02 4.02 Total: -1.00 -37.00 267.08 -5.04 -42.04 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -1.12 Total: 12.66 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.82 Total: 0.73 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.31 Total: -40.77 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.41 Total: -34.08 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -37.00 -5.04 -42.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652626545.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.759 kcal (2) G-P(sol) polarization free energy of solvation -37.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds