Wall clock time and date at job start Sun Mar 29 2020 22:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86801 * 119.99419 * 2 1 4 4 H 1.48499 * 109.46926 * 269.99726 * 3 2 1 5 5 H 1.48498 * 109.47577 * 30.00235 * 3 2 1 6 6 H 1.48502 * 109.46594 * 150.00257 * 3 2 1 7 7 C 1.40042 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00104 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00224 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00162 * 180.02562 * 9 7 2 12 12 C 1.46499 * 120.00307 * 179.97438 * 11 9 7 13 13 C 1.50703 * 109.47543 * 180.02562 * 12 11 9 14 14 C 1.38629 * 120.05295 * 89.99940 * 13 12 11 15 15 O 1.35896 * 120.02762 * 359.95948 * 14 13 12 16 16 C 1.38774 * 119.94420 * 180.23575 * 14 13 12 17 17 C 1.38170 * 120.05495 * 359.51127 * 16 14 13 18 18 C 1.38183 * 120.10967 * 0.46825 * 17 16 14 19 19 C 1.38636 * 120.05463 * 269.98175 * 13 12 11 20 20 O 1.35898 * 120.02605 * 359.97438 * 19 13 12 21 21 H 0.96999 * 120.00795 * 0.02562 * 1 2 3 22 22 H 0.97003 * 119.99916 * 0.02562 * 11 9 7 23 23 H 1.09002 * 109.47212 * 59.99998 * 12 11 9 24 24 H 1.09001 * 109.47382 * 300.00340 * 12 11 9 25 25 H 0.96700 * 114.00170 * 90.00033 * 15 14 13 26 26 H 1.07997 * 119.97089 * 179.74701 * 16 14 13 27 27 H 1.07997 * 119.95145 * 180.22919 * 17 16 14 28 28 H 1.08000 * 119.97312 * 179.76451 * 18 17 16 29 29 H 0.96705 * 113.99941 * 89.99906 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 2.4880 2.0465 -1.4001 5 1 1.4380 2.6527 0.7001 6 1 3.5381 1.4403 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2127 -0.0001 9 6 1.2752 -2.4804 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9491 -3.6476 -0.0005 12 6 1.2167 -4.9164 0.0000 13 6 2.1960 -6.0618 0.0005 14 6 2.6472 -6.5890 1.2007 15 8 2.2074 -6.0727 2.3783 16 6 3.5528 -7.6405 1.1985 17 6 3.9970 -8.1688 0.0016 18 6 3.5484 -7.6454 -1.1961 19 6 2.6470 -6.5904 -1.1992 20 8 2.2058 -6.0763 -2.3773 21 1 -0.4851 0.8400 -0.0004 22 1 2.9191 -3.6476 -0.0002 23 1 0.5897 -4.9744 -0.8897 24 1 0.5904 -4.9740 0.8902 25 1 1.4083 -6.4969 2.7198 26 1 3.9077 -8.0488 2.1333 27 1 4.6989 -8.9895 0.0019 28 1 3.9000 -8.0575 -2.1304 29 1 2.7494 -5.3531 -2.7190 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652626545.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:06 Heat of formation + Delta-G solvation = -133.312101 kcal Electronic energy + Delta-G solvation = -16292.169954 eV Core-core repulsion = 13372.239050 eV Total energy + Delta-G solvation = -2919.930904 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.28391 -39.22756 -38.76806 -36.66198 -35.43299 -34.48664 -31.79468 -30.24100 -28.73134 -26.47859 -23.52347 -22.68105 -21.69427 -19.89936 -19.29945 -18.39862 -17.52642 -17.34883 -16.87087 -16.18692 -16.00331 -15.69070 -15.42467 -15.07960 -14.43126 -14.03741 -13.59283 -13.46048 -13.14273 -12.95361 -12.74199 -12.65246 -12.59771 -12.02758 -11.65596 -11.49037 -10.94203 -10.11192 -9.62516 -9.55079 -9.51496 -8.29769 -6.87471 0.15141 0.19010 1.39538 1.41625 1.57081 2.24265 2.45791 2.49092 3.06154 3.26376 3.53398 3.59615 3.70047 3.99177 4.12939 4.46311 4.62590 4.69684 4.81623 4.92199 5.30145 5.34495 5.38361 5.46001 5.73728 5.84782 6.16193 6.24004 6.73261 6.80012 6.84934 7.50865 8.46796 8.65886 Molecular weight = 237.08amu Principal moments of inertia in cm(-1) A = 0.036264 B = 0.005953 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.931765 B = 4702.408075 C = 4855.980340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.572 4.572 8 H 0.086 0.914 9 C 0.538 3.462 10 O -0.633 6.633 11 N -0.743 5.743 12 C 0.190 3.810 13 C -0.174 4.174 14 C 0.126 3.874 15 O -0.508 6.508 16 C -0.155 4.155 17 C -0.072 4.072 18 C -0.155 4.155 19 C 0.124 3.876 20 O -0.509 6.509 21 H 0.275 0.725 22 H 0.390 0.610 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.406 0.594 26 H 0.155 0.845 27 H 0.171 0.829 28 H 0.155 0.845 29 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.307 -14.666 0.019 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.609 4.609 8 H 0.104 0.896 9 C 0.342 3.658 10 O -0.521 6.521 11 N -0.397 5.397 12 C 0.066 3.934 13 C -0.175 4.175 14 C 0.080 3.920 15 O -0.321 6.321 16 C -0.173 4.173 17 C -0.090 4.090 18 C -0.173 4.173 19 C 0.079 3.921 20 O -0.322 6.322 21 H 0.085 0.915 22 H 0.223 0.777 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.265 0.735 26 H 0.173 0.827 27 H 0.189 0.811 28 H 0.173 0.827 29 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 10.273 -14.646 0.023 17.889 hybrid contribution -0.005 0.918 0.022 0.918 sum 10.268 -13.728 0.045 17.143 Atomic orbital electron populations 1.70193 1.09592 1.29010 1.36367 1.27019 0.95566 1.05044 0.91152 0.84972 0.78665 0.74818 0.79511 1.18380 1.19721 1.17305 1.21397 0.94644 0.89966 1.54854 0.89557 1.18662 0.86841 0.84230 0.76039 1.90546 1.16256 1.87891 1.57402 1.45776 1.08813 1.04051 1.81050 1.19321 0.92682 0.82135 0.99258 1.20663 1.02624 0.99972 0.94255 1.18427 0.96182 0.93247 0.84098 1.84818 1.48878 1.63064 1.35332 1.21697 0.99099 0.95722 1.00820 1.21344 0.98308 0.99230 0.90153 1.21699 0.97328 0.97469 1.00828 1.18427 0.94582 0.94975 0.84117 1.84723 1.56685 1.55397 1.35382 0.91509 0.77703 0.94457 0.94496 0.73484 0.82724 0.81117 0.82728 0.73559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.61 11.83 21.83 0.26 -51.35 15 2 C 0.03 1.55 5.50 85.30 0.47 2.02 15 3 Si 1.00 41.75 29.56 68.60 2.03 43.78 15 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 15 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 15 6 H -0.25 -9.70 7.11 99.48 0.71 -8.99 15 7 C -0.57 -33.51 9.54 24.83 0.24 -33.28 15 8 H 0.09 4.54 7.85 -2.91 -0.02 4.52 15 9 C 0.54 32.74 7.75 86.36 0.67 33.41 15 10 O -0.63 -44.40 15.02 -4.30 -0.06 -44.46 15 11 N -0.74 -35.97 5.54 -471.14 -2.61 -38.59 15 12 C 0.19 8.27 5.36 85.63 0.46 8.73 15 13 C -0.17 -5.72 5.27 -19.67 -0.10 -5.82 15 14 C 0.13 3.55 6.67 22.49 0.15 3.70 15 15 O -0.51 -14.87 12.55 -92.38 -1.16 -16.03 15 16 C -0.16 -3.16 9.98 22.38 0.22 -2.94 15 17 C -0.07 -1.21 10.04 22.24 0.22 -0.99 15 18 C -0.15 -3.17 9.98 22.38 0.22 -2.95 15 19 C 0.12 3.53 6.67 22.49 0.15 3.68 15 20 O -0.51 -15.10 12.55 -92.40 -1.16 -16.26 15 21 H 0.28 15.57 8.29 -92.71 -0.77 14.80 15 22 H 0.39 16.83 8.44 -92.71 -0.78 16.05 15 23 H 0.04 1.78 7.53 -2.39 -0.02 1.76 15 24 H 0.04 1.71 7.53 -2.39 -0.02 1.69 15 25 H 0.41 8.25 9.06 -74.06 -0.67 7.58 15 26 H 0.16 2.35 8.06 -2.91 -0.02 2.33 15 27 H 0.17 1.48 8.06 -2.91 -0.02 1.46 15 28 H 0.16 2.36 8.06 -2.91 -0.02 2.34 15 29 H 0.41 9.45 9.06 -74.05 -0.67 8.78 15 Total: -1.00 -83.84 267.08 -0.91 -84.75 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: -0.90 Total: 32.57 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 2.70 Total: 5.58 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -2.35 Total: -89.94 kcal Atomic # 8 Polarization: -74.36 SS G_CDS: -2.38 Total: -76.75 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -83.84 -0.91 -84.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652626545.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.562 kcal (2) G-P(sol) polarization free energy of solvation -83.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds