Wall clock time and date at job start Sun Mar 29 2020 22:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.34247 * 2 1 4 4 C 1.53751 * 110.30350 * 237.87782 * 2 1 3 5 5 C 1.51220 * 104.48510 * 241.07515 * 4 2 1 6 6 C 1.38099 * 131.01686 * 180.02562 * 5 4 2 7 7 C 1.38386 * 120.14839 * 179.97438 * 6 5 4 8 8 Cl 1.73603 * 120.08154 * 180.02562 * 7 6 5 9 9 C 1.38451 * 119.83327 * 359.97438 * 7 6 5 10 10 C 1.37759 * 120.24015 * 359.97438 * 9 7 6 11 11 C 1.38762 * 108.49645 * 359.97438 * 5 4 2 12 12 N 1.39226 * 111.67185 * 0.02562 * 11 5 4 13 13 C 1.36854 * 124.92095 * 180.02562 * 12 11 5 14 14 H 1.08002 * 119.99495 * 340.12221 * 13 12 11 15 15 C 1.38780 * 119.99852 * 160.11472 * 13 12 11 16 16 N 1.31597 * 120.00616 * 349.68133 * 15 13 12 17 17 Si 1.86807 * 119.99677 * 169.67785 * 15 13 12 18 18 H 1.48499 * 109.46944 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46951 * 120.00316 * 17 15 13 20 20 H 1.48493 * 109.46987 * 240.00210 * 17 15 13 21 21 H 1.09004 * 109.47045 * 182.12010 * 1 2 3 22 22 H 1.08994 * 109.47405 * 302.11884 * 1 2 3 23 23 H 1.08999 * 109.47002 * 62.12420 * 1 2 3 24 24 H 1.09000 * 110.42920 * 359.82275 * 4 2 1 25 25 H 1.08997 * 110.43445 * 122.19629 * 4 2 1 26 26 H 1.08005 * 119.92573 * 359.97189 * 6 5 4 27 27 H 1.07998 * 119.87595 * 179.97438 * 9 7 6 28 28 H 1.07997 * 119.86339 * 179.97438 * 10 9 7 29 29 H 0.96998 * 120.00371 * 185.13482 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0635 -0.7667 -1.2212 5 6 2.8589 -1.9100 -0.6322 6 6 3.5679 -2.9281 -1.2388 7 6 4.2250 -3.8720 -0.4691 8 17 5.1162 -5.1507 -1.2335 9 6 4.1707 -3.7932 0.9121 10 6 3.4657 -2.7789 1.5221 11 6 2.7982 -1.8217 0.7513 12 7 2.0386 -0.7303 1.1640 13 6 1.8020 -0.3887 2.4679 14 1 1.9268 -1.1233 3.2497 15 6 1.4019 0.9017 2.7854 16 7 1.4448 1.8477 1.8716 17 14 0.8024 1.2959 4.5102 18 1 0.8508 0.0678 5.3437 19 1 1.6746 2.3365 5.1116 20 1 -0.5940 1.7967 4.4465 21 1 -0.3633 -1.0270 0.0380 22 1 -0.3634 0.5463 0.8703 23 1 -0.3633 0.4805 -0.9084 24 1 1.2376 -1.1476 -1.8219 25 1 2.7060 -0.1241 -1.8232 26 1 3.6095 -2.9879 -2.3164 27 1 4.6829 -4.5296 1.5135 28 1 3.4271 -2.7235 2.5999 29 1 1.2367 2.7641 2.1119 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656577781.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:27 Heat of formation + Delta-G solvation = 23.984554 kcal Electronic energy + Delta-G solvation = -14585.021910 eV Core-core repulsion = 12112.621066 eV Total energy + Delta-G solvation = -2472.400845 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.55561 -36.48739 -35.17385 -33.00746 -31.33696 -29.73921 -28.33644 -25.51057 -24.88419 -21.23632 -20.49139 -20.20023 -17.42264 -15.75031 -15.34896 -15.03576 -14.40399 -14.20702 -13.24384 -13.02200 -12.50403 -12.16369 -12.07376 -11.93995 -11.85815 -11.24468 -11.19370 -10.91916 -10.67720 -10.56873 -10.39381 -10.33567 -10.01681 -9.77787 -9.41861 -8.59706 -7.99387 -6.70644 -6.41346 -3.86653 2.29379 2.35172 3.06140 3.09843 3.11027 3.14052 3.91320 4.51273 4.72707 4.97156 5.53850 5.65351 5.78285 5.98610 6.09512 6.24016 6.34757 6.41596 6.50341 6.59369 6.71190 6.91141 7.03388 7.14641 7.22871 7.27095 7.37936 7.45325 7.60408 7.89669 8.46259 9.06061 9.55564 10.48023 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.040131 B = 0.007174 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.546283 B = 3902.145133 C = 4449.407828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.143 3.857 3 H 0.114 0.886 4 C -0.078 4.078 5 C -0.210 4.210 6 C -0.036 4.036 7 C -0.156 4.156 8 Cl -0.118 7.118 9 C -0.050 4.050 10 C -0.203 4.203 11 C 0.196 3.804 12 N -0.421 5.421 13 C -0.294 4.294 14 H 0.098 0.902 15 C 0.031 3.969 16 N -0.871 5.871 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.278 1.278 21 H 0.037 0.963 22 H 0.068 0.932 23 H 0.045 0.955 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -4.012 -3.114 5.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.039 3.961 3 H 0.131 0.869 4 C -0.116 4.116 5 C -0.216 4.216 6 C -0.056 4.056 7 C -0.186 4.186 8 Cl -0.090 7.090 9 C -0.070 4.070 10 C -0.227 4.227 11 C 0.075 3.925 12 N -0.103 5.103 13 C -0.422 4.422 14 H 0.116 0.884 15 C -0.174 4.174 16 N -0.507 5.507 17 Si 0.755 3.245 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.204 1.204 21 H 0.057 0.943 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.317 -3.546 -2.981 4.644 hybrid contribution -0.187 0.176 0.795 0.836 sum 0.130 -3.370 -2.186 4.019 Atomic orbital electron populations 1.21945 0.95947 1.00200 1.01421 1.21656 0.93898 0.98039 0.82484 0.86895 1.21133 0.97997 0.94639 0.97837 1.19494 1.08215 1.00629 0.93293 1.19748 0.95469 0.92332 0.98038 1.19806 1.09963 0.96622 0.92254 1.98244 1.75897 1.52325 1.82564 1.20295 0.97542 0.97009 0.92136 1.19901 1.06412 0.97812 0.98617 1.18514 0.91110 0.90369 0.92516 1.43071 1.40914 1.21311 1.05037 1.19519 1.43835 0.96428 0.82421 0.88442 1.25324 0.97292 0.95047 0.99712 1.69852 1.46357 1.01261 1.33214 0.85799 0.78538 0.78860 0.81258 1.19188 1.20481 1.20419 0.94348 0.91266 0.93619 0.91503 0.91411 0.87294 0.86996 0.86996 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.86 37.16 0.33 -2.47 15 2 C 0.14 3.16 2.88 -67.53 -0.19 2.96 15 3 H 0.11 2.73 6.32 -51.93 -0.33 2.40 15 4 C -0.08 -1.52 6.59 -27.24 -0.18 -1.70 15 5 C -0.21 -4.41 6.23 -104.22 -0.65 -5.06 15 6 C -0.04 -0.69 9.82 -39.58 -0.39 -1.08 15 7 C -0.16 -2.97 6.33 -39.45 -0.25 -3.22 15 8 Cl -0.12 -1.97 28.96 -51.86 -1.50 -3.47 15 9 C -0.05 -0.96 9.81 -39.68 -0.39 -1.35 15 10 C -0.20 -4.32 9.75 -39.15 -0.38 -4.70 15 11 C 0.20 4.51 6.64 -83.70 -0.56 3.95 15 12 N -0.42 -10.21 2.91 -105.52 -0.31 -10.51 15 13 C -0.29 -7.36 9.52 -15.11 -0.14 -7.51 15 14 H 0.10 2.39 7.44 -52.49 -0.39 2.00 15 15 C 0.03 0.74 4.60 -17.45 -0.08 0.66 15 16 N -0.87 -21.56 9.83 55.49 0.55 -21.02 15 17 Si 0.93 19.06 29.57 -169.99 -5.03 14.04 15 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 19 H -0.28 -5.75 7.11 56.52 0.40 -5.34 15 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 21 H 0.04 0.77 8.14 -51.93 -0.42 0.34 15 22 H 0.07 1.55 6.53 -51.93 -0.34 1.21 15 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.07 1.17 7.71 -51.93 -0.40 0.77 15 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 26 H 0.11 1.87 8.06 -52.48 -0.42 1.44 15 27 H 0.11 1.88 8.06 -52.49 -0.42 1.46 15 28 H 0.11 2.31 7.65 -52.49 -0.40 1.91 15 29 H 0.27 6.39 8.32 -40.82 -0.34 6.05 15 LS Contribution 258.13 15.07 3.89 3.89 Total: -1.00 -25.09 258.13 -8.39 -33.48 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.11 Total: 3.10 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -2.88 Total: -19.51 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.24 Total: -31.53 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.04 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -1.50 Total: -3.47 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -25.09 -8.39 -33.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656577781.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.464 kcal (2) G-P(sol) polarization free energy of solvation -25.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds