Wall clock time and date at job start Sun Mar 29 2020 22:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.34247 * 2 1 4 4 C 1.53751 * 110.30350 * 237.87782 * 2 1 3 5 5 C 1.51220 * 104.48510 * 241.07515 * 4 2 1 6 6 C 1.38099 * 131.01686 * 180.02562 * 5 4 2 7 7 C 1.38386 * 120.14839 * 179.97438 * 6 5 4 8 8 Cl 1.73603 * 120.08154 * 180.02562 * 7 6 5 9 9 C 1.38451 * 119.83327 * 359.97438 * 7 6 5 10 10 C 1.37759 * 120.24015 * 359.97438 * 9 7 6 11 11 C 1.38762 * 108.49645 * 359.97438 * 5 4 2 12 12 N 1.39226 * 111.67185 * 0.02562 * 11 5 4 13 13 C 1.36854 * 124.92095 * 180.02562 * 12 11 5 14 14 H 1.08002 * 119.99495 * 340.12221 * 13 12 11 15 15 C 1.38780 * 119.99852 * 160.11472 * 13 12 11 16 16 N 1.31597 * 120.00616 * 349.68133 * 15 13 12 17 17 Si 1.86807 * 119.99677 * 169.67785 * 15 13 12 18 18 H 1.48499 * 109.46944 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46951 * 120.00316 * 17 15 13 20 20 H 1.48493 * 109.46987 * 240.00210 * 17 15 13 21 21 H 1.09004 * 109.47045 * 182.12010 * 1 2 3 22 22 H 1.08994 * 109.47405 * 302.11884 * 1 2 3 23 23 H 1.08999 * 109.47002 * 62.12420 * 1 2 3 24 24 H 1.09000 * 110.42920 * 359.82275 * 4 2 1 25 25 H 1.08997 * 110.43445 * 122.19629 * 4 2 1 26 26 H 1.08005 * 119.92573 * 359.97189 * 6 5 4 27 27 H 1.07998 * 119.87595 * 179.97438 * 9 7 6 28 28 H 1.07997 * 119.86339 * 179.97438 * 10 9 7 29 29 H 0.96998 * 120.00371 * 185.13482 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0635 -0.7667 -1.2212 5 6 2.8589 -1.9100 -0.6322 6 6 3.5679 -2.9281 -1.2388 7 6 4.2250 -3.8720 -0.4691 8 17 5.1162 -5.1507 -1.2335 9 6 4.1707 -3.7932 0.9121 10 6 3.4657 -2.7789 1.5221 11 6 2.7982 -1.8217 0.7513 12 7 2.0386 -0.7303 1.1640 13 6 1.8020 -0.3887 2.4679 14 1 1.9268 -1.1233 3.2497 15 6 1.4019 0.9017 2.7854 16 7 1.4448 1.8477 1.8716 17 14 0.8024 1.2959 4.5102 18 1 0.8508 0.0678 5.3437 19 1 1.6746 2.3365 5.1116 20 1 -0.5940 1.7967 4.4465 21 1 -0.3633 -1.0270 0.0380 22 1 -0.3634 0.5463 0.8703 23 1 -0.3633 0.4805 -0.9084 24 1 1.2376 -1.1476 -1.8219 25 1 2.7060 -0.1241 -1.8232 26 1 3.6095 -2.9879 -2.3164 27 1 4.6829 -4.5296 1.5135 28 1 3.4271 -2.7235 2.5999 29 1 1.2367 2.7641 2.1119 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656577781.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:27 Heat of formation + Delta-G solvation = 13.190341 kcal Electronic energy + Delta-G solvation = -14585.489983 eV Core-core repulsion = 12112.621066 eV Total energy + Delta-G solvation = -2472.868917 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.19003 -38.05765 -36.68959 -34.71889 -33.01566 -31.35793 -29.99012 -27.10356 -26.64331 -22.86684 -22.09035 -21.87829 -19.13425 -17.49993 -16.90931 -16.69186 -16.03908 -15.82423 -14.87451 -14.65179 -14.11961 -13.74872 -13.68363 -13.56925 -13.42512 -12.86121 -12.80618 -12.49666 -12.28596 -12.10190 -12.06828 -11.94015 -11.65323 -11.31552 -11.11462 -10.28673 -9.56672 -8.44514 -8.15295 -5.70732 0.69230 0.74144 1.41399 1.43254 1.52623 1.59188 2.23079 2.82977 3.08026 3.22375 3.96351 4.04109 4.28105 4.43031 4.53427 4.68131 4.77296 4.80287 4.87884 5.01762 5.13128 5.28929 5.33128 5.47601 5.53979 5.63179 5.69548 5.81991 5.94670 6.23188 6.68726 7.30984 7.80628 8.69942 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.040131 B = 0.007174 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.546283 B = 3902.145133 C = 4449.407828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.140 3.860 3 H 0.086 0.914 4 C -0.071 4.071 5 C -0.216 4.216 6 C -0.037 4.037 7 C -0.150 4.150 8 Cl -0.090 7.090 9 C -0.048 4.048 10 C -0.219 4.219 11 C 0.170 3.830 12 N -0.450 5.450 13 C -0.318 4.318 14 H 0.088 0.912 15 C -0.007 4.007 16 N -0.894 5.894 17 Si 0.988 3.012 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.277 1.277 21 H 0.036 0.964 22 H 0.042 0.958 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.107 0.893 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 -5.318 -4.161 6.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.036 3.964 3 H 0.104 0.896 4 C -0.108 4.108 5 C -0.222 4.222 6 C -0.056 4.056 7 C -0.180 4.180 8 Cl -0.062 7.062 9 C -0.068 4.068 10 C -0.243 4.243 11 C 0.051 3.949 12 N -0.135 5.135 13 C -0.446 4.446 14 H 0.106 0.894 15 C -0.208 4.208 16 N -0.531 5.531 17 Si 0.812 3.188 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.202 1.202 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.091 0.909 24 H 0.108 0.892 25 H 0.101 0.899 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.126 0.874 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.814 -4.893 -4.048 6.402 hybrid contribution -0.178 0.367 0.999 1.079 sum 0.636 -4.526 -3.049 5.494 Atomic orbital electron populations 1.21834 0.95206 0.99855 1.01528 1.21616 0.94581 0.96983 0.83223 0.89650 1.21120 0.98728 0.94069 0.96924 1.19807 1.08378 1.01392 0.92668 1.20050 0.94538 0.91552 0.99502 1.20053 1.08759 0.96756 0.92412 1.98261 1.75084 1.50850 1.81992 1.20555 0.96787 0.96694 0.92741 1.20082 1.07081 0.98485 0.98682 1.19007 0.91491 0.90442 0.93923 1.43170 1.42817 1.22487 1.05042 1.19621 1.45022 0.96735 0.83183 0.89375 1.25991 0.97334 0.94691 1.02782 1.69969 1.47453 1.01289 1.34428 0.84924 0.77875 0.78423 0.77569 1.18941 1.20408 1.20208 0.94488 0.93863 0.90949 0.89224 0.89935 0.84618 0.84495 0.87448 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.86 71.98 0.64 -4.53 15 2 C 0.14 6.22 2.88 45.24 0.13 6.35 15 3 H 0.09 4.24 6.32 -2.39 -0.02 4.23 15 4 C -0.07 -2.65 6.59 30.27 0.20 -2.45 15 5 C -0.22 -8.74 6.23 -19.61 -0.12 -8.86 15 6 C -0.04 -1.31 9.82 22.27 0.22 -1.09 15 7 C -0.15 -5.24 6.33 22.36 0.14 -5.10 15 8 Cl -0.09 -2.67 28.96 -2.72 -0.08 -2.75 15 9 C -0.05 -1.75 9.81 22.21 0.22 -1.53 15 10 C -0.22 -9.24 9.75 22.55 0.22 -9.02 15 11 C 0.17 7.80 6.64 38.48 0.26 8.05 15 12 N -0.45 -22.25 2.91 -487.77 -1.42 -23.67 15 13 C -0.32 -16.43 9.52 84.04 0.80 -15.64 15 14 H 0.09 4.52 7.44 -2.91 -0.02 4.50 15 15 C -0.01 -0.32 4.60 84.86 0.39 0.07 15 16 N -0.89 -45.60 9.83 21.64 0.21 -45.38 15 17 Si 0.99 39.97 29.57 68.60 2.03 42.00 15 18 H -0.27 -10.47 7.11 99.48 0.71 -9.76 15 19 H -0.28 -11.12 7.11 99.48 0.71 -10.41 15 20 H -0.28 -10.98 7.11 99.48 0.71 -10.27 15 21 H 0.04 1.47 8.14 -2.39 -0.02 1.45 15 22 H 0.04 1.97 6.53 -2.39 -0.02 1.95 15 23 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 24 H 0.09 2.91 7.71 -2.39 -0.02 2.89 15 25 H 0.08 2.80 8.14 -2.39 -0.02 2.78 15 26 H 0.14 4.09 8.06 -2.91 -0.02 4.07 15 27 H 0.14 4.22 8.06 -2.91 -0.02 4.19 15 28 H 0.11 4.52 7.65 -2.91 -0.02 4.50 15 29 H 0.27 13.10 8.32 -92.71 -0.77 12.33 15 Total: -1.00 -53.62 258.13 4.98 -48.63 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 1.15 Total: 14.91 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 3.09 Total: -33.74 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -1.21 Total: -69.05 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -0.08 Total: -2.75 kcal Total: -53.62 4.98 -48.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656577781.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.824 kcal (2) G-P(sol) polarization free energy of solvation -53.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds