Wall clock time and date at job start Sun Mar 29 2020 22:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34176 * 125.43696 * 2 1 4 4 C 1.47022 * 105.95256 * 180.02562 * 3 2 1 5 5 C 1.47390 * 127.19003 * 180.02562 * 4 3 2 6 6 O 1.21613 * 119.99614 * 187.41126 * 5 4 3 7 7 N 1.34772 * 119.99982 * 7.41232 * 5 4 3 8 8 C 1.46501 * 120.00008 * 6.25514 * 7 5 4 9 9 C 1.46501 * 119.99983 * 186.25865 * 7 5 4 10 10 C 1.50699 * 109.46886 * 270.00075 * 9 7 5 11 11 H 1.07994 * 120.00066 * 359.97438 * 10 9 7 12 12 C 1.37884 * 119.99762 * 180.02562 * 10 9 7 13 13 N 1.31512 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99821 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47211 * 89.99657 * 14 12 10 16 16 H 1.48497 * 109.47054 * 209.99944 * 14 12 10 17 17 H 1.48502 * 109.47238 * 329.99678 * 14 12 10 18 18 C 1.36411 * 105.61579 * 0.26346 * 4 3 2 19 19 C 1.50700 * 125.79978 * 179.73589 * 18 4 3 20 20 O 1.33653 * 108.40085 * 359.57571 * 18 4 3 21 21 H 1.08995 * 109.47212 * 89.99868 * 1 2 3 22 22 H 1.09008 * 109.46621 * 209.99802 * 1 2 3 23 23 H 1.08994 * 109.47073 * 329.99281 * 1 2 3 24 24 H 1.07997 * 127.02220 * 359.97438 * 3 2 1 25 25 H 1.09001 * 109.47400 * 275.85732 * 8 7 5 26 26 H 1.09002 * 109.47189 * 35.85975 * 8 7 5 27 27 H 1.09003 * 109.47117 * 155.85417 * 8 7 5 28 28 H 1.09002 * 109.46942 * 149.99644 * 9 7 5 29 29 H 1.09002 * 109.46826 * 29.99691 * 9 7 5 30 30 H 0.97008 * 119.99396 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47175 * 90.00110 * 19 18 4 32 32 H 1.09000 * 109.47044 * 209.99783 * 19 18 4 33 33 H 1.09005 * 109.47508 * 330.00341 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9026 1.4126 -0.0003 6 8 5.9844 0.8740 -0.1368 7 7 4.8298 2.7498 0.1512 8 6 3.5439 3.3839 0.4521 9 6 6.0365 3.5692 0.0148 10 6 6.7049 3.7064 1.3584 11 1 6.2738 3.2312 2.2271 12 6 7.8664 4.4396 1.4789 13 7 8.3911 5.0187 0.4211 14 14 8.6954 4.6092 3.1443 15 1 9.6685 3.5026 3.3278 16 1 9.4070 5.9107 3.2128 17 1 7.6695 4.5490 4.2163 18 6 3.5790 -0.7582 -0.0070 19 6 4.7390 -1.7201 -0.0157 20 8 2.2853 -1.0936 -0.0007 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5139 23 1 -0.3633 0.8899 0.5139 24 1 1.9595 2.1230 -0.0004 25 1 2.9951 3.5507 -0.4748 26 1 2.9627 2.7343 1.1066 27 1 3.7170 4.3387 0.9487 28 1 5.7649 4.5566 -0.3586 29 1 6.7224 3.0920 -0.6852 30 1 9.2085 5.5342 0.5058 31 1 5.0222 -1.9571 1.0099 32 1 4.4488 -2.6346 -0.5330 33 1 5.5851 -1.2645 -0.5302 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:26 Heat of formation + Delta-G solvation = -15.843838 kcal Electronic energy + Delta-G solvation = -16779.568334 eV Core-core repulsion = 14000.564331 eV Total energy + Delta-G solvation = -2779.004004 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.39406 -38.61920 -34.91753 -33.20044 -32.70402 -32.26846 -29.46819 -27.73975 -26.32332 -24.66520 -23.42078 -21.81670 -20.44374 -17.91058 -16.58206 -16.43588 -16.24837 -15.54552 -15.16590 -14.31443 -14.12226 -13.66605 -13.39142 -13.35069 -12.95169 -12.60122 -12.45883 -12.39865 -12.27563 -12.10811 -11.40187 -11.34936 -11.03078 -10.83228 -10.51783 -10.12065 -9.64611 -9.38740 -8.96184 -8.40502 -8.21287 -7.56469 -6.01115 -4.05430 1.69498 2.25846 2.89236 3.33704 3.39400 3.42250 3.97462 4.12427 4.48234 4.61420 4.98167 5.16854 5.22381 5.32169 5.33022 5.45692 5.53736 5.68791 5.72040 5.76625 5.87649 5.94078 6.11595 6.25344 6.39896 6.54205 7.08029 7.28502 7.46251 7.59423 7.95581 8.26782 8.46895 8.93910 9.14703 9.59435 11.06921 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036069 B = 0.006167 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.112100 B = 4539.223348 C = 4857.626348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.030 4.030 3 C -0.195 4.195 4 C -0.226 4.226 5 C 0.575 3.425 6 O -0.541 6.541 7 N -0.593 5.593 8 C 0.076 3.924 9 C 0.247 3.753 10 C -0.523 4.523 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.896 5.896 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.060 3.940 19 C -0.079 4.079 20 O -0.180 6.180 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.169 0.831 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.397 -8.459 -0.987 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.214 4.214 4 C -0.230 4.230 5 C 0.363 3.637 6 O -0.420 6.420 7 N -0.324 5.324 8 C -0.067 4.067 9 C 0.128 3.872 10 C -0.562 4.562 11 H 0.075 0.925 12 C -0.141 4.141 13 N -0.536 5.536 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.200 1.200 18 C 0.008 3.992 19 C -0.135 4.135 20 O -0.078 6.078 21 H 0.097 0.903 22 H 0.092 0.908 23 H 0.106 0.894 24 H 0.186 0.814 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.778 -8.857 -1.117 17.265 hybrid contribution 0.446 0.487 0.951 1.158 sum -14.333 -8.369 -0.167 16.598 Atomic orbital electron populations 1.20263 0.85097 1.03862 1.03307 1.22230 0.93805 0.84036 1.07721 1.23327 0.91125 0.99930 1.06996 1.21504 0.94468 0.93321 1.13749 1.17150 0.86692 0.82123 0.77718 1.90708 1.28987 1.71187 1.51167 1.47922 1.10374 1.05979 1.68171 1.22108 0.86171 0.99171 0.99292 1.19318 0.80808 0.89354 0.97766 1.21439 1.08821 1.31499 0.94454 0.92455 1.24935 0.96768 0.95462 0.96969 1.69938 1.20914 1.33929 1.28771 0.86490 0.79596 0.77362 0.83925 1.20534 1.21166 1.19966 1.22722 0.82544 0.94259 0.99720 1.20588 0.92491 0.96300 1.04153 1.83634 1.16353 1.35641 1.72178 0.90316 0.90796 0.89385 0.81411 0.93731 0.91451 0.90861 0.94883 0.93889 0.92754 0.89763 0.90974 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.40 36.01 0.37 -0.19 16 2 C -0.03 -0.39 7.28 -35.74 -0.26 -0.65 16 3 C -0.19 -2.89 8.75 -37.45 -0.33 -3.21 16 4 C -0.23 -4.20 6.06 -103.27 -0.63 -4.82 16 5 C 0.58 13.14 7.64 -12.54 -0.10 13.05 16 6 O -0.54 -14.06 14.47 5.27 0.08 -13.99 16 7 N -0.59 -13.49 2.86 -184.24 -0.53 -14.02 16 8 C 0.08 1.31 8.66 59.85 0.52 1.83 16 9 C 0.25 6.66 5.09 -5.19 -0.03 6.64 16 10 C -0.52 -15.25 9.39 -34.44 -0.32 -15.57 16 11 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 14 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.06 0.99 7.37 -34.97 -0.26 0.74 16 19 C -0.08 -1.14 9.97 36.01 0.36 -0.78 16 20 O -0.18 -2.70 10.52 7.63 0.08 -2.62 16 21 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 23 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.17 2.11 4.88 -52.49 -0.26 1.85 16 25 H 0.04 0.65 7.34 -51.93 -0.38 0.27 16 26 H 0.07 1.03 5.37 -51.93 -0.28 0.75 16 27 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 28 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.04 1.29 7.52 -51.93 -0.39 0.90 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.11 1.86 6.37 -51.93 -0.33 1.53 16 LS Contribution 282.47 15.07 4.26 4.26 Total: -1.00 -34.23 282.47 -5.29 -39.53 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -4.13 Total: -2.80 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -0.76 Total: -1.31 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.21 Total: -40.27 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.16 Total: -16.61 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.23 -5.29 -39.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.682 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds