Wall clock time and date at job start Sun Mar 29 2020 22:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34176 * 125.43696 * 2 1 4 4 C 1.47022 * 105.95256 * 180.02562 * 3 2 1 5 5 C 1.47390 * 127.19003 * 180.02562 * 4 3 2 6 6 O 1.21613 * 119.99614 * 187.41126 * 5 4 3 7 7 N 1.34772 * 119.99982 * 7.41232 * 5 4 3 8 8 C 1.46501 * 120.00008 * 6.25514 * 7 5 4 9 9 C 1.46501 * 119.99983 * 186.25865 * 7 5 4 10 10 C 1.50699 * 109.46886 * 270.00075 * 9 7 5 11 11 H 1.07994 * 120.00066 * 359.97438 * 10 9 7 12 12 C 1.37884 * 119.99762 * 180.02562 * 10 9 7 13 13 N 1.31512 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99821 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47211 * 89.99657 * 14 12 10 16 16 H 1.48497 * 109.47054 * 209.99944 * 14 12 10 17 17 H 1.48502 * 109.47238 * 329.99678 * 14 12 10 18 18 C 1.36411 * 105.61579 * 0.26346 * 4 3 2 19 19 C 1.50700 * 125.79978 * 179.73589 * 18 4 3 20 20 O 1.33653 * 108.40085 * 359.57571 * 18 4 3 21 21 H 1.08995 * 109.47212 * 89.99868 * 1 2 3 22 22 H 1.09008 * 109.46621 * 209.99802 * 1 2 3 23 23 H 1.08994 * 109.47073 * 329.99281 * 1 2 3 24 24 H 1.07997 * 127.02220 * 359.97438 * 3 2 1 25 25 H 1.09001 * 109.47400 * 275.85732 * 8 7 5 26 26 H 1.09002 * 109.47189 * 35.85975 * 8 7 5 27 27 H 1.09003 * 109.47117 * 155.85417 * 8 7 5 28 28 H 1.09002 * 109.46942 * 149.99644 * 9 7 5 29 29 H 1.09002 * 109.46826 * 29.99691 * 9 7 5 30 30 H 0.97008 * 119.99396 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47175 * 90.00110 * 19 18 4 32 32 H 1.09000 * 109.47044 * 209.99783 * 19 18 4 33 33 H 1.09005 * 109.47508 * 330.00341 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9026 1.4126 -0.0003 6 8 5.9844 0.8740 -0.1368 7 7 4.8298 2.7498 0.1512 8 6 3.5439 3.3839 0.4521 9 6 6.0365 3.5692 0.0148 10 6 6.7049 3.7064 1.3584 11 1 6.2738 3.2312 2.2271 12 6 7.8664 4.4396 1.4789 13 7 8.3911 5.0187 0.4211 14 14 8.6954 4.6092 3.1443 15 1 9.6685 3.5026 3.3278 16 1 9.4070 5.9107 3.2128 17 1 7.6695 4.5490 4.2163 18 6 3.5790 -0.7582 -0.0070 19 6 4.7390 -1.7201 -0.0157 20 8 2.2853 -1.0936 -0.0007 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5139 23 1 -0.3633 0.8899 0.5139 24 1 1.9595 2.1230 -0.0004 25 1 2.9951 3.5507 -0.4748 26 1 2.9627 2.7343 1.1066 27 1 3.7170 4.3387 0.9487 28 1 5.7649 4.5566 -0.3586 29 1 6.7224 3.0920 -0.6852 30 1 9.2085 5.5342 0.5058 31 1 5.0222 -1.9571 1.0099 32 1 4.4488 -2.6346 -0.5330 33 1 5.5851 -1.2645 -0.5302 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:25 Heat of formation + Delta-G solvation = -38.703728 kcal Electronic energy + Delta-G solvation = -16780.559613 eV Core-core repulsion = 14000.564331 eV Total energy + Delta-G solvation = -2779.995283 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.58812 -40.37569 -36.73246 -34.95843 -33.94003 -33.79465 -30.61628 -29.58164 -27.86295 -26.08906 -25.10249 -23.25768 -21.91295 -19.37232 -18.71434 -17.93956 -17.46442 -17.07070 -16.83130 -16.19601 -15.87444 -14.96911 -14.44946 -14.35641 -14.26310 -14.10442 -13.96018 -13.76013 -13.43574 -13.40529 -13.24799 -12.93498 -12.67119 -12.51234 -12.28103 -12.12366 -11.74221 -10.78692 -10.67296 -10.65879 -9.57358 -9.22694 -8.23351 -6.38470 0.36915 1.09599 1.35913 1.39283 1.49146 1.76517 2.26334 2.44514 2.46410 3.05719 3.55690 3.75862 3.92219 4.27589 4.36123 4.45502 4.56812 4.59159 4.62913 4.71915 4.79755 4.86554 4.90730 5.03625 5.07774 5.17243 5.26726 5.49143 5.54910 5.81713 6.04069 6.09871 6.67216 6.73748 7.25227 7.42484 8.83684 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036069 B = 0.006167 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.112100 B = 4539.223348 C = 4857.626348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.014 4.014 3 C -0.208 4.208 4 C -0.261 4.261 5 C 0.566 3.434 6 O -0.590 6.590 7 N -0.603 5.603 8 C 0.073 3.927 9 C 0.261 3.739 10 C -0.543 4.543 11 H 0.049 0.951 12 C 0.009 3.991 13 N -0.928 5.928 14 Si 0.969 3.031 15 H -0.280 1.280 16 H -0.272 1.272 17 H -0.264 1.264 18 C 0.061 3.939 19 C -0.079 4.079 20 O -0.178 6.178 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.111 0.889 24 H 0.190 0.810 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.028 0.972 29 H -0.001 1.001 30 H 0.268 0.732 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.899 -8.899 0.120 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.062 4.062 3 C -0.226 4.226 4 C -0.266 4.266 5 C 0.356 3.644 6 O -0.473 6.473 7 N -0.333 5.333 8 C -0.069 4.069 9 C 0.140 3.860 10 C -0.581 4.581 11 H 0.067 0.933 12 C -0.190 4.190 13 N -0.567 5.567 14 Si 0.793 3.207 15 H -0.205 1.205 16 H -0.196 1.196 17 H -0.188 1.188 18 C 0.008 3.992 19 C -0.135 4.135 20 O -0.075 6.075 21 H 0.116 0.884 22 H 0.106 0.894 23 H 0.129 0.871 24 H 0.207 0.793 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.017 0.983 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.341 -9.286 -0.010 19.671 hybrid contribution 1.144 0.580 0.545 1.394 sum -16.196 -8.706 0.535 18.396 Atomic orbital electron populations 1.20555 0.81072 1.05726 1.05084 1.23178 0.95707 0.82797 1.04540 1.23483 0.89165 1.01636 1.08346 1.21293 0.94368 0.94010 1.16883 1.17807 0.87735 0.82238 0.76588 1.90664 1.31222 1.72094 1.53306 1.47934 1.10963 1.06101 1.68280 1.22405 0.84061 0.99068 1.01366 1.18821 0.82040 0.89091 0.96046 1.21657 1.09746 1.31913 0.94835 0.93266 1.25856 0.97223 0.94802 1.01120 1.70049 1.21393 1.34280 1.31020 0.85394 0.78490 0.77717 0.79069 1.20545 1.19636 1.18820 1.22970 0.83694 0.93987 0.98589 1.20587 0.91104 0.97039 1.04745 1.83683 1.15609 1.36406 1.71782 0.88408 0.89383 0.87078 0.79324 0.90617 0.89163 0.91130 0.95366 0.98296 0.92285 0.88939 0.87615 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.40 71.24 0.74 -0.05 16 2 C -0.01 -0.32 7.28 24.76 0.18 -0.14 16 3 C -0.21 -5.66 8.75 23.65 0.21 -5.45 16 4 C -0.26 -9.64 6.06 -18.99 -0.12 -9.76 16 5 C 0.57 26.79 7.64 86.65 0.66 27.46 16 6 O -0.59 -32.55 14.47 -4.07 -0.06 -32.61 16 7 N -0.60 -28.12 2.86 -855.07 -2.44 -30.57 16 8 C 0.07 2.42 8.66 127.77 1.11 3.53 16 9 C 0.26 14.78 5.09 85.63 0.44 15.21 16 10 C -0.54 -32.56 9.39 25.60 0.24 -32.32 16 11 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 12 C 0.01 0.53 5.46 84.66 0.46 0.99 16 13 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 14 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 15 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 18 C 0.06 1.97 7.37 25.26 0.19 2.16 16 19 C -0.08 -2.25 9.97 71.24 0.71 -1.54 16 20 O -0.18 -4.88 10.52 4.40 0.05 -4.84 16 21 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 23 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.19 4.12 4.88 -2.91 -0.01 4.11 16 25 H 0.08 2.05 7.34 -2.39 -0.02 2.03 16 26 H 0.09 2.60 5.37 -2.39 -0.01 2.58 16 27 H 0.07 2.37 8.03 -2.39 -0.02 2.35 16 28 H 0.03 1.59 8.07 -2.39 -0.02 1.58 16 29 H 0.00 -0.07 7.52 -2.39 -0.02 -0.09 16 30 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 31 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.08 2.95 6.37 -2.38 -0.02 2.94 16 Total: -1.00 -77.59 282.47 5.79 -71.80 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 1.11 Total: 4.97 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 4.82 Total: 0.08 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -2.16 Total: -87.34 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.01 Total: -37.44 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -77.59 5.79 -71.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.100 kcal (2) G-P(sol) polarization free energy of solvation -77.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds