Wall clock time and date at job start Sun Mar 29 2020 21:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46506 * 119.99552 * 2 1 4 4 C 1.50705 * 109.46771 * 269.99608 * 3 2 1 5 5 H 1.07998 * 119.99857 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99571 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00354 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99729 * 180.02562 * 6 4 3 9 9 H 1.48491 * 109.47421 * 90.00148 * 8 6 4 10 10 H 1.48504 * 109.47211 * 210.00325 * 8 6 4 11 11 H 1.48508 * 109.46984 * 329.99886 * 8 6 4 12 12 C 1.34770 * 120.00363 * 179.97438 * 2 1 3 13 13 O 1.21575 * 119.99869 * 184.31083 * 12 2 1 14 14 C 1.47720 * 120.00230 * 4.30728 * 12 2 1 15 15 C 1.39647 * 120.12026 * 147.99762 * 14 12 2 16 16 C 1.37835 * 119.87841 * 180.30076 * 15 14 12 17 17 C 1.38655 * 120.12186 * 359.44607 * 16 15 14 18 18 F 1.35096 * 119.88633 * 180.25804 * 17 16 15 19 19 C 1.38661 * 120.23435 * 0.55002 * 17 16 15 20 20 C 1.37834 * 120.12225 * 359.73074 * 19 17 16 21 21 H 1.08996 * 109.47709 * 274.58369 * 1 2 3 22 22 H 1.08996 * 109.47659 * 34.59118 * 1 2 3 23 23 H 1.09007 * 109.46665 * 154.58991 * 1 2 3 24 24 H 1.08998 * 109.47195 * 29.99326 * 3 2 1 25 25 H 1.08996 * 109.46873 * 150.00031 * 3 2 1 26 26 H 0.96997 * 120.00317 * 180.02562 * 7 6 4 27 27 H 1.07996 * 120.05941 * 0.02562 * 15 14 12 28 28 H 1.08001 * 119.93968 * 179.69498 * 16 15 14 29 29 H 1.08002 * 119.93853 * 179.69781 * 19 17 16 30 30 H 1.07992 * 120.06194 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1258 2.8781 -1.6728 7 7 3.5530 3.6183 -0.6733 8 14 3.4366 3.4176 -3.4340 9 1 2.3062 4.2601 -3.9004 10 1 4.6966 4.2009 -3.4967 11 1 3.5541 2.2205 -4.3050 12 6 2.1389 -1.1671 0.0005 13 8 3.3520 -1.1684 0.0797 14 6 1.4035 -2.4447 -0.0950 15 6 1.9822 -3.5398 -0.7399 16 6 1.2891 -4.7277 -0.8316 17 6 0.0242 -4.8400 -0.2749 18 9 -0.6487 -6.0081 -0.3630 19 6 -0.5550 -3.7558 0.3667 20 6 0.1269 -2.5615 0.4591 21 1 -0.3634 0.0821 1.0243 22 1 -0.3634 0.8459 -0.5834 23 1 -0.3633 -0.9283 -0.4410 24 1 1.6082 2.0285 0.5137 25 1 3.1498 1.1385 0.5138 26 1 4.0292 4.4446 -0.8505 27 1 2.9692 -3.4548 -1.1700 28 1 1.7338 -5.5738 -1.3345 29 1 -1.5425 -3.8471 0.7944 30 1 -0.3253 -1.7176 0.9586 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:45 Heat of formation + Delta-G solvation = -59.064677 kcal Electronic energy + Delta-G solvation = -16157.921642 eV Core-core repulsion = 13253.583137 eV Total energy + Delta-G solvation = -2904.338505 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.96264 -41.32743 -39.06081 -36.78189 -34.83313 -32.37837 -31.91511 -29.52174 -27.69724 -25.59991 -23.95850 -23.57348 -20.74661 -18.74326 -18.63727 -18.30378 -17.61170 -16.91378 -16.64329 -16.24063 -16.07936 -15.58622 -14.97387 -14.69112 -14.39458 -14.20201 -13.86074 -13.67716 -13.38954 -13.30513 -12.97538 -12.72024 -12.48220 -12.24593 -11.85570 -11.73826 -10.81632 -10.65430 -10.13420 -9.79112 -9.47133 -8.24206 -6.39433 -0.27333 0.19218 1.36699 1.39610 1.49850 1.77063 2.22199 2.40927 2.66777 3.05644 3.14892 3.55691 3.71680 3.87882 4.15346 4.28109 4.35972 4.62020 4.75605 4.87761 4.93823 4.95745 5.03064 5.08961 5.20755 5.31266 5.51607 5.75599 5.80614 6.02790 6.63545 6.70550 7.22241 7.37248 8.83108 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.042305 B = 0.005575 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.697013 B = 5021.387183 C = 5157.549602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.599 5.599 3 C 0.257 3.743 4 C -0.547 4.547 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.927 5.927 8 Si 0.969 3.031 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.538 3.462 13 O -0.596 6.596 14 C -0.151 4.151 15 C -0.050 4.050 16 C -0.155 4.155 17 C 0.112 3.888 18 F -0.136 7.136 19 C -0.148 4.148 20 C -0.067 4.067 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.104 0.896 24 H 0.031 0.969 25 H 0.001 0.999 26 H 0.268 0.732 27 H 0.129 0.871 28 H 0.162 0.838 29 H 0.176 0.824 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 -14.425 0.819 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.329 5.329 3 C 0.136 3.864 4 C -0.586 4.586 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.327 3.673 13 O -0.478 6.478 14 C -0.154 4.154 15 C -0.070 4.070 16 C -0.173 4.173 17 C 0.093 3.907 18 F -0.115 7.115 19 C -0.167 4.167 20 C -0.085 4.085 21 H 0.103 0.897 22 H 0.087 0.913 23 H 0.122 0.878 24 H 0.049 0.951 25 H 0.019 0.981 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.180 0.820 29 H 0.193 0.807 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.308 -14.255 0.910 18.218 hybrid contribution 0.659 0.512 -0.758 1.127 sum -10.649 -13.743 0.152 17.387 Atomic orbital electron populations 1.22647 0.78031 1.04670 1.03003 1.48064 1.08536 1.06155 1.70126 1.18848 0.91343 0.79945 0.96295 1.21687 1.37224 1.06738 0.92902 0.92903 1.25852 0.94739 0.96324 1.02060 1.70043 1.38777 1.14747 1.33071 0.85397 0.78162 0.78202 0.78940 1.18675 1.20546 1.19861 1.18888 0.86874 0.84796 0.76722 1.90713 1.16165 1.88049 1.52898 1.20022 0.96925 0.93502 1.04979 1.21093 0.99538 0.90972 0.95352 1.21222 0.94081 0.99124 1.02897 1.18073 0.91217 0.82197 0.99238 1.91514 1.79717 1.45965 1.94296 1.21395 1.02880 0.90921 1.01463 1.21984 0.91435 0.98849 0.96269 0.89670 0.91329 0.87803 0.95146 0.98063 0.92286 0.85261 0.82036 0.80706 0.80959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.67 8.80 127.77 1.12 2.80 16 2 N -0.60 -25.75 2.86 -854.72 -2.44 -28.19 16 3 C 0.26 13.93 5.22 85.63 0.45 14.37 16 4 C -0.55 -31.66 9.39 25.60 0.24 -31.42 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.55 5.46 84.66 0.46 1.01 16 7 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 8 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 9 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.54 23.48 7.43 86.75 0.64 24.12 16 13 O -0.60 -32.16 16.31 -3.95 -0.06 -32.22 16 14 C -0.15 -4.78 5.47 -20.09 -0.11 -4.89 16 15 C -0.05 -1.44 9.60 22.51 0.22 -1.23 16 16 C -0.15 -3.37 10.01 22.27 0.22 -3.15 16 17 C 0.11 2.27 7.31 22.47 0.16 2.43 16 18 F -0.14 -2.70 17.26 44.97 0.78 -1.92 16 19 C -0.15 -2.63 10.01 22.28 0.22 -2.41 16 20 C -0.07 -1.50 7.43 22.52 0.17 -1.34 16 21 H 0.09 1.90 7.44 -2.39 -0.02 1.88 16 22 H 0.07 2.08 8.11 -2.39 -0.02 2.06 16 23 H 0.10 2.41 4.72 -2.38 -0.01 2.40 16 24 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 25 H 0.00 0.08 7.36 -2.39 -0.02 0.06 16 26 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.13 3.95 7.95 -2.91 -0.02 3.93 16 28 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.18 1.89 8.06 -2.91 -0.02 1.86 16 30 H 0.17 3.13 4.81 -2.91 -0.01 3.11 16 Total: -1.00 -73.84 267.39 5.54 -68.30 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 1.16 Total: 2.58 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 3.80 Total: 0.30 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -2.16 Total: -83.82 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.06 Total: -32.22 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -73.84 5.54 -68.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.231 kcal (2) G-P(sol) polarization free energy of solvation -73.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds