Wall clock time and date at job start Sun Mar 29 2020 21:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76198 * 103.00209 * 2 1 4 4 C 1.38972 * 120.08435 * 180.02562 * 3 2 1 5 5 C 1.38085 * 119.92268 * 180.02562 * 4 3 2 6 6 C 1.38301 * 120.07790 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.92127 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46943 * 89.99854 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47066 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00144 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00103 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99826 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00043 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46802 * 60.00722 * 14 12 10 16 16 H 1.48498 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47344 * 300.00519 * 14 12 10 18 18 C 1.38302 * 120.16228 * 0.27398 * 6 5 4 19 19 C 1.38087 * 120.08074 * 359.45365 * 18 6 5 20 20 H 1.09003 * 109.47390 * 299.99962 * 1 2 3 21 21 H 1.09004 * 109.47671 * 59.99876 * 1 2 3 22 22 H 1.08998 * 109.47431 * 180.02562 * 1 2 3 23 23 H 1.08003 * 120.03577 * 359.97438 * 4 3 2 24 24 H 1.07993 * 119.95978 * 179.97438 * 5 4 3 25 25 H 1.09004 * 109.46763 * 330.00296 * 7 6 5 26 26 H 1.08995 * 109.47483 * 209.99953 * 7 6 5 27 27 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 28 28 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 29 29 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 30 30 H 0.96997 * 120.00392 * 179.97438 * 13 12 10 31 31 H 1.08001 * 119.96063 * 179.71955 * 18 6 5 32 32 H 1.07999 * 120.04260 * 180.27043 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5388 2.1250 -0.0005 5 6 3.8456 3.4714 0.0000 6 6 2.8328 4.4131 0.0005 7 6 3.1718 5.8815 0.0005 8 7 3.2813 6.3587 -1.3845 9 6 3.6122 7.7895 -1.4237 10 6 3.7153 8.2421 -2.8574 11 1 3.5511 7.5375 -3.6592 12 6 4.0184 9.5560 -3.1454 13 7 4.2178 10.4141 -2.1690 14 14 4.1469 10.1168 -4.9226 15 1 2.8497 9.8892 -5.6085 16 1 4.4813 11.5631 -4.9622 17 1 5.2125 9.3439 -5.6097 18 6 1.5097 4.0106 0.0063 19 6 1.1952 2.6661 0.0001 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 4.3302 1.3901 -0.0005 24 1 4.8777 3.7892 0.0000 25 1 4.1209 6.0352 0.5140 26 1 2.3866 6.4357 0.5147 27 1 3.9580 5.8171 -1.9011 28 1 2.8303 8.3571 -0.9192 29 1 4.5644 7.9561 -0.9203 30 1 4.4314 11.3383 -2.3716 31 1 0.7214 4.7488 0.0112 32 1 0.1618 2.3525 0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020200103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:09 Heat of formation + Delta-G solvation = 15.660447 kcal Electronic energy + Delta-G solvation = -13674.108769 eV Core-core repulsion = 11339.223764 eV Total energy + Delta-G solvation = -2334.885004 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.13007 -35.35565 -32.73650 -31.21658 -30.88890 -29.05163 -27.02749 -24.40250 -22.54572 -21.58193 -20.96036 -17.73607 -16.60344 -15.69549 -15.37135 -14.77640 -14.58005 -14.24226 -14.04041 -13.80393 -13.45471 -13.32723 -12.63881 -12.51157 -12.34610 -11.72045 -11.39336 -11.05991 -10.99146 -10.71684 -10.64958 -10.32040 -9.98745 -9.50689 -9.20354 -8.89208 -8.49052 -7.46415 -7.29195 -6.04343 -4.06550 1.27776 1.42037 1.47413 2.28562 3.33556 3.37135 3.40551 3.77754 4.43034 4.81370 4.82915 4.86102 4.97287 5.09445 5.31490 5.37064 5.45828 5.52652 5.60045 5.80582 5.89227 6.16814 6.20858 6.30656 6.42258 6.82752 7.00305 7.20985 7.38686 7.76154 8.10074 8.35531 8.57300 9.02330 9.58388 11.06716 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.049554 B = 0.003965 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.908883 B = 7060.979946 C = 7200.840197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.134 6.134 3 C -0.093 4.093 4 C -0.100 4.100 5 C -0.099 4.099 6 C -0.066 4.066 7 C 0.093 3.907 8 N -0.684 5.684 9 C 0.193 3.807 10 C -0.515 4.515 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.081 4.081 19 C -0.133 4.133 20 H 0.083 0.917 21 H 0.084 0.916 22 H 0.105 0.895 23 H 0.124 0.876 24 H 0.126 0.874 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.330 0.670 28 H 0.029 0.971 29 H -0.013 1.013 30 H 0.262 0.738 31 H 0.127 0.873 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 -18.238 6.246 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.107 5.893 3 C -0.205 4.205 4 C -0.123 4.123 5 C -0.119 4.119 6 C -0.069 4.069 7 C -0.036 4.036 8 N -0.314 5.314 9 C 0.067 3.933 10 C -0.554 4.554 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.728 3.272 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.101 4.101 19 C -0.157 4.157 20 H 0.102 0.898 21 H 0.103 0.897 22 H 0.123 0.877 23 H 0.142 0.858 24 H 0.143 0.857 25 H 0.048 0.952 26 H 0.092 0.908 27 H 0.147 0.853 28 H 0.047 0.953 29 H 0.005 0.995 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.345 -18.969 6.217 20.665 hybrid contribution 0.161 1.542 -0.673 1.690 sum -5.184 -17.426 5.544 19.008 Atomic orbital electron populations 1.23630 0.94847 1.06790 1.05740 1.85333 1.06434 1.04246 1.93262 1.21577 0.96777 0.95718 1.06457 1.20660 0.94046 0.95993 1.01592 1.21031 0.99368 0.92050 0.99437 1.20113 0.93104 0.96070 0.97606 1.20902 0.99908 0.89731 0.93103 1.60754 1.54581 1.06947 1.09133 1.19588 0.94518 0.81823 0.97396 1.21144 1.47355 0.94793 0.92113 0.91977 1.24989 0.95346 0.96626 0.97580 1.69948 1.48285 1.04046 1.31504 0.86526 0.78626 0.77378 0.84680 1.20129 1.21318 1.20228 1.20972 0.96425 0.94861 0.97877 1.21110 0.97833 0.93238 1.03509 0.89819 0.89697 0.87662 0.85832 0.85651 0.95241 0.90808 0.85343 0.95321 0.99478 0.92819 0.85466 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.15 101.05 0.92 -0.15 16 2 S -0.13 -1.46 22.56 -107.50 -2.43 -3.88 16 3 C -0.09 -1.21 6.11 -39.03 -0.24 -1.45 16 4 C -0.10 -1.32 9.79 -39.37 -0.39 -1.70 16 5 C -0.10 -1.39 9.69 -39.61 -0.38 -1.77 16 6 C -0.07 -1.03 5.40 -104.58 -0.56 -1.59 16 7 C 0.09 1.65 5.81 -4.98 -0.03 1.63 16 8 N -0.68 -14.79 6.48 -116.34 -0.75 -15.55 16 9 C 0.19 5.08 5.44 -4.97 -0.03 5.05 16 10 C -0.52 -14.71 9.32 -34.44 -0.32 -15.03 16 11 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 14 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.08 -1.17 9.69 -39.61 -0.38 -1.55 16 19 C -0.13 -1.72 9.36 -39.36 -0.37 -2.09 16 20 H 0.08 0.59 7.75 -51.92 -0.40 0.18 16 21 H 0.08 0.63 7.75 -51.92 -0.40 0.23 16 22 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 24 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 25 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 26 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 27 H 0.33 6.92 8.71 -39.29 -0.34 6.58 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 29 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.12 1.27 5.88 -52.49 -0.31 0.96 16 LS Contribution 289.39 15.07 4.36 4.36 Total: -1.00 -30.47 289.39 -9.35 -39.82 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.38 Total: 1.82 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.87 Total: -17.15 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.02 Total: -41.72 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.43 Total: -3.88 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.47 -9.35 -39.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020200103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.481 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds