Wall clock time and date at job start Sun Mar 29 2020 21:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76198 * 103.00209 * 2 1 4 4 C 1.38972 * 120.08435 * 180.02562 * 3 2 1 5 5 C 1.38085 * 119.92268 * 180.02562 * 4 3 2 6 6 C 1.38301 * 120.07790 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.92127 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46943 * 89.99854 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47066 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00144 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00103 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99826 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00043 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46802 * 60.00722 * 14 12 10 16 16 H 1.48498 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47344 * 300.00519 * 14 12 10 18 18 C 1.38302 * 120.16228 * 0.27398 * 6 5 4 19 19 C 1.38087 * 120.08074 * 359.45365 * 18 6 5 20 20 H 1.09003 * 109.47390 * 299.99962 * 1 2 3 21 21 H 1.09004 * 109.47671 * 59.99876 * 1 2 3 22 22 H 1.08998 * 109.47431 * 180.02562 * 1 2 3 23 23 H 1.08003 * 120.03577 * 359.97438 * 4 3 2 24 24 H 1.07993 * 119.95978 * 179.97438 * 5 4 3 25 25 H 1.09004 * 109.46763 * 330.00296 * 7 6 5 26 26 H 1.08995 * 109.47483 * 209.99953 * 7 6 5 27 27 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 28 28 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 29 29 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 30 30 H 0.96997 * 120.00392 * 179.97438 * 13 12 10 31 31 H 1.08001 * 119.96063 * 179.71955 * 18 6 5 32 32 H 1.07999 * 120.04260 * 180.27043 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5388 2.1250 -0.0005 5 6 3.8456 3.4714 0.0000 6 6 2.8328 4.4131 0.0005 7 6 3.1718 5.8815 0.0005 8 7 3.2813 6.3587 -1.3845 9 6 3.6122 7.7895 -1.4237 10 6 3.7153 8.2421 -2.8574 11 1 3.5511 7.5375 -3.6592 12 6 4.0184 9.5560 -3.1454 13 7 4.2178 10.4141 -2.1690 14 14 4.1469 10.1168 -4.9226 15 1 2.8497 9.8892 -5.6085 16 1 4.4813 11.5631 -4.9622 17 1 5.2125 9.3439 -5.6097 18 6 1.5097 4.0106 0.0063 19 6 1.1952 2.6661 0.0001 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 4.3302 1.3901 -0.0005 24 1 4.8777 3.7892 0.0000 25 1 4.1209 6.0352 0.5140 26 1 2.3866 6.4357 0.5147 27 1 3.9580 5.8171 -1.9011 28 1 2.8303 8.3571 -0.9192 29 1 4.5644 7.9561 -0.9203 30 1 4.4314 11.3383 -2.3716 31 1 0.7214 4.7488 0.0112 32 1 0.1618 2.3525 0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020200103.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:08 Heat of formation + Delta-G solvation = -2.816315 kcal Electronic energy + Delta-G solvation = -13674.909981 eV Core-core repulsion = 11339.223764 eV Total energy + Delta-G solvation = -2335.686217 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.23616 -37.06578 -34.71935 -32.47591 -32.09313 -29.76007 -28.83707 -26.04101 -23.63409 -23.47660 -22.24763 -18.80634 -18.52628 -17.09880 -16.58507 -16.48643 -15.80541 -15.58032 -15.26105 -14.82233 -14.65174 -14.51385 -14.15682 -13.65008 -13.49599 -13.21470 -13.16160 -12.76394 -12.61790 -12.27561 -12.06140 -11.92590 -11.36185 -11.16365 -10.67418 -10.56869 -9.94217 -9.16388 -8.33659 -8.22358 -6.34850 0.18684 0.41907 0.60080 1.41407 1.44941 1.49086 1.53084 2.39665 2.67718 3.09925 3.69683 3.82216 3.97681 4.01155 4.27799 4.29723 4.34378 4.43098 4.63445 4.67057 4.83836 4.88493 5.04944 5.09526 5.21937 5.26638 5.34279 5.59095 5.69555 5.92228 6.00204 6.40769 6.67252 6.85918 7.36046 8.88046 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.049554 B = 0.003965 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.908883 B = 7060.979946 C = 7200.840197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.145 6.145 3 C -0.096 4.096 4 C -0.106 4.106 5 C -0.102 4.102 6 C -0.086 4.086 7 C 0.098 3.902 8 N -0.682 5.682 9 C 0.207 3.793 10 C -0.538 4.538 11 H 0.063 0.937 12 C 0.002 3.998 13 N -0.934 5.934 14 Si 0.974 3.026 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.266 1.266 18 C -0.090 4.090 19 C -0.134 4.134 20 H 0.092 0.908 21 H 0.089 0.911 22 H 0.127 0.873 23 H 0.140 0.860 24 H 0.133 0.867 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.334 0.666 28 H 0.003 0.997 29 H -0.036 1.036 30 H 0.266 0.734 31 H 0.129 0.871 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 -19.874 5.393 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.096 5.904 3 C -0.209 4.209 4 C -0.129 4.129 5 C -0.122 4.122 6 C -0.089 4.089 7 C -0.031 4.031 8 N -0.313 5.313 9 C 0.080 3.920 10 C -0.577 4.577 11 H 0.082 0.918 12 C -0.196 4.196 13 N -0.574 5.574 14 Si 0.798 3.202 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.191 1.191 18 C -0.110 4.110 19 C -0.157 4.157 20 H 0.111 0.889 21 H 0.108 0.892 22 H 0.146 0.854 23 H 0.158 0.842 24 H 0.151 0.849 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.151 0.849 28 H 0.021 0.979 29 H -0.018 1.018 30 H 0.075 0.925 31 H 0.147 0.853 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.107 -20.641 5.373 22.186 hybrid contribution 0.336 1.917 -0.334 1.975 sum -5.772 -18.723 5.039 20.231 Atomic orbital electron populations 1.23775 0.91783 1.08521 1.06464 1.85408 1.09839 1.02301 1.92816 1.21876 0.96790 0.97223 1.04992 1.20889 0.94907 0.95847 1.01303 1.21138 0.99473 0.92410 0.99176 1.19898 0.94184 0.94489 1.00346 1.20854 0.99843 0.91630 0.90769 1.60621 1.54292 1.04550 1.11809 1.19243 0.92312 0.84384 0.96106 1.21507 1.47735 0.95396 0.93020 0.91843 1.25953 0.94587 0.96629 1.02449 1.70076 1.48838 1.04486 1.33971 0.85372 0.79035 0.77051 0.78763 1.19329 1.20674 1.19095 1.21089 0.96007 0.95902 0.98028 1.21350 0.99169 0.92441 1.02763 0.88862 0.89174 0.85450 0.84237 0.84924 0.95141 0.91225 0.84864 0.97920 1.01849 0.92529 0.85268 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.15 113.37 1.04 -0.60 16 2 S -0.14 -2.82 22.56 -56.49 -1.27 -4.09 16 3 C -0.10 -2.33 6.11 22.62 0.14 -2.19 16 4 C -0.11 -2.66 9.79 22.41 0.22 -2.44 16 5 C -0.10 -2.81 9.69 22.25 0.22 -2.59 16 6 C -0.09 -2.67 5.40 -19.84 -0.11 -2.77 16 7 C 0.10 3.57 5.81 85.56 0.50 4.07 16 8 N -0.68 -30.14 6.48 -521.98 -3.38 -33.52 16 9 C 0.21 11.26 5.44 85.55 0.47 11.73 16 10 C -0.54 -31.14 9.32 25.60 0.24 -30.90 16 11 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 12 C 0.00 0.12 5.46 84.66 0.46 0.59 16 13 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 14 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 C -0.09 -2.53 9.69 22.25 0.22 -2.31 16 19 C -0.13 -3.20 9.36 22.41 0.21 -2.99 16 20 H 0.09 0.98 7.75 -2.39 -0.02 0.96 16 21 H 0.09 1.03 7.75 -2.39 -0.02 1.02 16 22 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 24 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 25 H 0.03 1.10 8.08 -2.39 -0.02 1.08 16 26 H 0.07 2.55 8.08 -2.39 -0.02 2.53 16 27 H 0.33 14.21 8.71 -89.69 -0.78 13.43 16 28 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 29 H -0.04 -2.09 8.14 -2.39 -0.02 -2.11 16 30 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 32 H 0.14 2.65 5.88 -2.91 -0.02 2.63 16 Total: -1.00 -65.11 289.39 1.57 -63.54 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.32 Total: 14.40 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 3.59 Total: -30.42 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -3.10 Total: -89.95 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -1.27 Total: -4.09 kcal Total: -65.11 1.57 -63.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020200103.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.725 kcal (2) G-P(sol) polarization free energy of solvation -65.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds