Wall clock time and date at job start Sun Mar 29 2020 21:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46494 * 120.00636 * 2 1 4 4 C 1.50699 * 109.47225 * 270.00515 * 3 2 1 5 5 C 1.38272 * 119.98449 * 269.72461 * 4 3 2 6 6 C 1.38224 * 120.04810 * 179.72594 * 5 4 3 7 7 C 1.38213 * 120.02694 * 0.54758 * 6 5 4 8 8 C 1.38436 * 119.97619 * 359.72296 * 7 6 5 9 9 F 1.35099 * 120.02821 * 180.02562 * 8 7 6 10 10 C 1.38169 * 119.98989 * 89.99686 * 4 3 2 11 11 C 1.34781 * 119.99714 * 180.02562 * 2 1 3 12 12 O 1.21690 * 120.00174 * 179.72359 * 11 2 1 13 13 C 1.46375 * 120.00113 * 359.97438 * 11 2 1 14 14 H 1.08007 * 119.99786 * 352.43379 * 13 11 2 15 15 C 1.40042 * 120.00381 * 172.43007 * 13 11 2 16 16 N 1.30673 * 120.00102 * 6.05674 * 15 13 11 17 17 Si 1.86806 * 120.00238 * 186.05264 * 15 13 11 18 18 H 1.48491 * 109.46959 * 94.98083 * 17 15 13 19 19 H 1.48503 * 109.46978 * 214.98156 * 17 15 13 20 20 H 1.48502 * 109.47036 * 334.97941 * 17 15 13 21 21 H 1.09000 * 109.46735 * 269.99937 * 1 2 3 22 22 H 1.08998 * 109.46832 * 29.99694 * 1 2 3 23 23 H 1.08995 * 109.47408 * 150.00093 * 1 2 3 24 24 H 1.09005 * 109.47050 * 30.00021 * 3 2 1 25 25 H 1.08997 * 109.47585 * 149.99715 * 3 2 1 26 26 H 1.07999 * 119.97321 * 359.97438 * 5 4 3 27 27 H 1.07995 * 119.98176 * 180.27345 * 6 5 4 28 28 H 1.07998 * 120.01540 * 179.75151 * 7 6 5 29 29 H 1.07997 * 120.01502 * 359.97438 * 10 4 3 30 30 H 0.96993 * 120.00694 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 3.6037 1.3090 -2.0705 6 6 3.8327 1.7026 -3.3756 7 6 2.9126 2.5007 -4.0288 8 6 1.7585 2.9011 -3.3775 9 9 0.8582 3.6808 -4.0152 10 6 1.5275 2.5015 -2.0718 11 6 2.1389 -1.1673 -0.0005 12 8 3.3557 -1.1674 -0.0056 13 6 1.4069 -2.4349 -0.0005 14 1 0.3340 -2.4389 0.1231 15 6 2.0978 -3.6424 -0.1608 16 7 3.4042 -3.6487 -0.1916 17 14 1.1519 -5.2444 -0.3305 18 1 0.9742 -5.5641 -1.7696 19 1 1.9086 -6.3383 0.3299 20 1 -0.1788 -5.1041 0.3135 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3634 -0.8899 -0.5138 24 1 1.6086 2.0283 0.5139 25 1 3.1500 1.1383 0.5138 26 1 4.3255 0.6893 -1.5592 27 1 4.7331 1.3900 -3.8834 28 1 3.0936 2.8114 -5.0472 29 1 0.6273 2.8130 -1.5629 30 1 3.8828 -4.4850 -0.3023 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020266757.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:31 Heat of formation + Delta-G solvation = -77.140185 kcal Electronic energy + Delta-G solvation = -16393.508279 eV Core-core repulsion = 13488.385961 eV Total energy + Delta-G solvation = -2905.122318 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.88148 -40.44768 -39.09930 -35.89531 -34.56947 -32.74872 -31.45690 -28.95352 -27.69145 -26.06664 -23.66398 -22.85181 -21.04188 -18.45848 -18.23645 -17.68912 -17.10998 -17.07603 -16.63575 -16.28138 -15.88795 -15.71882 -14.85275 -14.42759 -14.22634 -13.85370 -13.41233 -13.30239 -13.05797 -12.95515 -12.85726 -12.73750 -12.47265 -12.18991 -11.99624 -11.95014 -10.91601 -10.06459 -9.77035 -9.55831 -9.08938 -8.27627 -6.81061 0.19189 0.25251 1.39984 1.40303 1.55772 2.23864 2.47896 2.54968 3.10088 3.24056 3.60092 3.80102 3.87178 4.12467 4.27875 4.37505 4.48608 4.57332 4.73568 4.92271 4.97148 5.05598 5.10213 5.13122 5.37777 5.38666 5.59657 5.80588 5.96861 6.15395 6.40467 6.90406 7.42429 8.49583 8.69133 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.031730 B = 0.006658 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.247274 B = 4204.456350 C = 4338.311141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.645 5.645 3 C 0.161 3.839 4 C -0.075 4.075 5 C -0.124 4.124 6 C -0.095 4.095 7 C -0.153 4.153 8 C 0.081 3.919 9 F -0.143 7.143 10 C -0.142 4.142 11 C 0.541 3.459 12 O -0.620 6.620 13 C -0.571 4.571 14 H 0.089 0.911 15 C 0.032 3.968 16 N -0.819 5.819 17 Si 0.990 3.010 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.248 1.248 21 H 0.049 0.951 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.150 0.850 28 H 0.159 0.841 29 H 0.152 0.848 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 9.729 -4.925 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.381 5.381 3 C 0.037 3.963 4 C -0.076 4.076 5 C -0.143 4.143 6 C -0.113 4.113 7 C -0.172 4.172 8 C 0.062 3.938 9 F -0.122 7.122 10 C -0.161 4.161 11 C 0.347 3.653 12 O -0.506 6.506 13 C -0.607 4.607 14 H 0.107 0.893 15 C -0.184 4.184 16 N -0.449 5.449 17 Si 0.810 3.190 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.171 1.171 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.079 0.921 24 H 0.122 0.878 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.168 0.832 28 H 0.177 0.823 29 H 0.169 0.831 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.672 9.681 -4.926 11.824 hybrid contribution -0.132 -0.706 -0.069 0.721 sum -4.804 8.975 -4.995 11.339 Atomic orbital electron populations 1.21586 0.79507 1.02414 1.00994 1.47902 1.06886 1.04511 1.78825 1.20107 0.97961 0.86694 0.91523 1.20350 0.93722 0.95493 0.98074 1.21340 0.98020 0.98938 0.96027 1.21229 0.99988 0.96418 0.93703 1.21345 0.93381 1.00525 1.01938 1.17762 0.89122 0.95156 0.91763 1.91469 1.66460 1.72481 1.81775 1.21106 1.00986 1.00341 0.93713 1.18587 0.86742 0.84005 0.75955 1.90528 1.15845 1.87367 1.56884 1.21515 0.95500 0.90254 1.53433 0.89265 1.26900 0.95495 1.04446 0.91515 1.70175 1.09607 1.28739 1.36387 0.85120 0.79103 0.75670 0.79153 1.19064 1.19814 1.17099 0.93277 0.90610 0.92074 0.87825 0.92424 0.87747 0.83247 0.82308 0.83066 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.39 10.10 127.77 1.29 4.68 16 2 N -0.65 -28.56 2.86 -856.28 -2.45 -31.01 16 3 C 0.16 6.06 5.53 85.63 0.47 6.53 16 4 C -0.07 -2.66 5.46 -19.87 -0.11 -2.76 16 5 C -0.12 -4.69 9.70 22.27 0.22 -4.47 16 6 C -0.10 -2.89 10.04 22.26 0.22 -2.67 16 7 C -0.15 -4.11 10.03 22.31 0.22 -3.89 16 8 C 0.08 2.32 7.30 22.38 0.16 2.49 16 9 F -0.14 -3.92 17.27 44.97 0.78 -3.14 16 10 C -0.14 -4.24 9.68 22.31 0.22 -4.02 16 11 C 0.54 30.72 7.60 86.36 0.66 31.38 16 12 O -0.62 -39.95 14.16 -4.32 -0.06 -40.01 16 13 C -0.57 -31.87 8.65 24.83 0.21 -31.66 16 14 H 0.09 4.49 6.15 -2.91 -0.02 4.47 16 15 C 0.03 1.75 5.49 85.30 0.47 2.22 16 16 N -0.82 -49.57 11.86 21.83 0.26 -49.31 16 17 Si 0.99 40.74 29.56 68.60 2.03 42.77 16 18 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 20 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 21 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.08 2.07 8.07 -2.39 -0.02 2.05 16 23 H 0.06 2.25 6.20 -2.39 -0.01 2.24 16 24 H 0.10 3.02 8.02 -2.38 -0.02 3.00 16 25 H 0.06 2.48 7.37 -2.39 -0.02 2.46 16 26 H 0.10 4.63 7.58 -2.91 -0.02 4.61 16 27 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 28 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 29 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 30 H 0.27 15.00 8.29 -92.71 -0.77 14.23 16 Total: -1.00 -72.17 270.61 5.75 -66.42 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 1.15 Total: 16.47 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 4.04 Total: -2.18 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -2.19 Total: -80.32 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.06 Total: -40.01 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.78 Total: -3.14 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -72.17 5.75 -66.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020266757.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.717 kcal (2) G-P(sol) polarization free energy of solvation -72.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds