Wall clock time and date at job start Sun Mar 29 2020 21:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47489 * 2 1 4 4 C 1.34642 * 117.00331 * 179.97438 * 3 2 1 5 5 O 1.21517 * 119.99706 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00187 * 180.02562 * 4 3 2 7 7 C 1.39987 * 119.99906 * 175.01276 * 6 4 3 8 8 C 1.39671 * 120.41663 * 327.57649 * 7 6 4 9 9 C 1.38908 * 118.64443 * 179.75458 * 8 7 6 10 10 C 1.37691 * 119.38341 * 0.49406 * 9 8 7 11 11 N 1.33502 * 120.79100 * 359.74780 * 10 9 8 12 12 C 1.34560 * 119.27085 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99458 * 331.26006 * 12 11 10 14 14 C 1.39968 * 120.00269 * 151.26687 * 12 11 10 15 15 N 1.30823 * 120.00030 * 343.05605 * 14 12 11 16 16 Si 1.86793 * 120.00078 * 163.06219 * 14 12 11 17 17 H 1.48497 * 109.47395 * 59.99627 * 16 14 12 18 18 H 1.48507 * 109.47401 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47158 * 299.99536 * 16 14 12 20 20 C 1.33437 * 121.45972 * 0.02562 * 11 10 9 21 21 H 1.08993 * 109.46767 * 299.99854 * 1 2 3 22 22 H 1.09001 * 109.46694 * 59.99429 * 1 2 3 23 23 H 1.08994 * 109.47214 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47253 * 239.99962 * 2 1 3 25 25 H 1.09001 * 109.47358 * 120.00217 * 2 1 3 26 26 H 0.96999 * 120.00280 * 355.01301 * 6 4 3 27 27 H 1.08004 * 120.67515 * 359.97119 * 8 7 6 28 28 H 1.07997 * 120.30712 * 180.26087 * 9 8 7 29 29 H 1.08001 * 119.60922 * 179.72370 * 10 9 8 30 30 H 0.96992 * 120.00166 * 180.02562 * 15 14 12 31 31 H 1.08008 * 119.72569 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3489 1.5453 0.0005 5 8 4.0891 0.5816 0.0005 6 7 3.8641 2.7907 0.0011 7 6 5.2476 2.9758 0.1070 8 6 6.0258 2.0833 0.8479 9 6 7.3958 2.2991 0.9242 10 6 7.9456 3.3852 0.2806 11 7 7.1788 4.2263 -0.4170 12 6 7.7482 5.2776 -1.0343 13 1 8.6498 5.7161 -0.6328 14 6 7.1721 5.8030 -2.1968 15 7 6.2974 5.0996 -2.8687 16 14 7.6523 7.5083 -2.7887 17 1 9.1112 7.5444 -3.0635 18 1 6.9058 7.8293 -4.0317 19 1 7.3211 8.5074 -1.7411 20 6 5.8601 4.0476 -0.5157 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.2762 3.5588 -0.0719 27 1 5.5719 1.2406 1.3482 28 1 8.0235 1.6234 1.4861 29 1 9.0098 3.5589 0.3413 30 1 5.8984 5.4634 -3.6745 31 1 5.2663 4.7458 -1.0872 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020281528.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:37 Heat of formation + Delta-G solvation = 25.262517 kcal Electronic energy + Delta-G solvation = -16484.855723 eV Core-core repulsion = 13655.864053 eV Total energy + Delta-G solvation = -2828.991670 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 237.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.96604 -41.76833 -38.70049 -37.03361 -36.09541 -34.09955 -32.74113 -31.40789 -28.62191 -25.72854 -25.31000 -23.96313 -22.73141 -21.26746 -20.45394 -18.78011 -18.26279 -17.96807 -17.69803 -17.18217 -17.07495 -16.30511 -16.02546 -15.39151 -15.18345 -14.91702 -14.09101 -13.70153 -13.55499 -13.44873 -13.33405 -13.16686 -12.98675 -12.60218 -12.42111 -12.23475 -11.93055 -11.61756 -11.42514 -10.98348 -9.82286 -9.47439 -7.44818 -0.41058 -0.15605 0.70294 1.23907 1.32240 1.45566 1.53289 1.86027 2.05328 2.21301 2.55037 2.89858 3.63340 3.75665 3.95065 3.97825 4.00607 4.03319 4.20509 4.32537 4.47458 4.65491 4.84640 4.88798 4.89972 5.00037 5.08629 5.15788 5.19470 5.33378 5.67064 5.97048 6.09825 6.20701 6.93356 7.43051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.074 3.926 3 O -0.364 6.364 4 C 0.654 3.346 5 O -0.577 6.577 6 N -0.634 5.634 7 C 0.179 3.821 8 C -0.154 4.154 9 C -0.063 4.063 10 C -0.033 4.033 11 N -0.124 5.124 12 C -0.321 4.321 13 H 0.180 0.820 14 C 0.037 3.963 15 N -0.780 5.780 16 Si 1.007 2.993 17 H -0.252 1.252 18 H -0.278 1.278 19 H -0.248 1.248 20 C -0.017 4.017 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.102 0.898 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.434 0.566 27 H 0.144 0.856 28 H 0.189 0.811 29 H 0.208 0.792 30 H 0.320 0.680 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.945 -0.073 4.428 4.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.001 3.999 3 O -0.278 6.278 4 C 0.408 3.592 5 O -0.467 6.467 6 N -0.287 5.287 7 C 0.084 3.916 8 C -0.181 4.181 9 C -0.081 4.081 10 C -0.170 4.170 11 N 0.231 4.769 12 C -0.456 4.456 13 H 0.197 0.803 14 C -0.187 4.187 15 N -0.404 5.404 16 Si 0.826 3.174 17 H -0.175 1.175 18 H -0.203 1.203 19 H -0.172 1.172 20 C -0.158 4.158 21 H 0.090 0.910 22 H 0.087 0.913 23 H 0.121 0.879 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.274 0.726 27 H 0.162 0.838 28 H 0.206 0.794 29 H 0.225 0.775 30 H 0.134 0.866 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.870 -0.581 4.167 4.297 hybrid contribution -0.432 0.624 -0.703 1.034 sum -1.302 0.044 3.464 3.701 Atomic orbital electron populations 1.21869 0.90316 1.04600 1.03827 1.23336 0.96484 0.76945 1.03181 1.86278 1.20062 1.35368 1.86079 1.18051 0.81973 0.83624 0.75561 1.91026 1.60309 1.40279 1.55041 1.41619 1.05443 1.07114 1.74494 1.17308 0.82603 0.95871 0.95854 1.21821 0.94866 1.01211 1.00243 1.21700 0.94210 0.95728 0.96492 1.23073 0.99677 0.91881 1.02333 1.38156 1.04930 1.13570 1.20280 1.21683 1.12781 1.04416 1.06750 0.80312 1.26885 0.93807 1.03518 0.94491 1.69515 1.19409 1.36895 1.14533 0.84645 0.80303 0.73879 0.78604 1.17545 1.20270 1.17171 1.21898 0.85157 1.03103 1.05635 0.91046 0.91340 0.87949 0.91109 0.90534 0.72644 0.83792 0.79359 0.77530 0.86641 0.80161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.74 10.29 71.98 0.74 1.48 16 2 C 0.07 -0.03 6.19 71.98 0.45 0.42 16 3 O -0.36 -1.08 10.27 -55.52 -0.57 -1.65 16 4 C 0.65 3.64 8.52 129.79 1.11 4.75 16 5 O -0.58 -6.31 13.79 19.79 0.27 -6.04 16 6 N -0.63 -0.91 5.36 -429.27 -2.30 -3.21 16 7 C 0.18 0.54 6.31 38.19 0.24 0.78 16 8 C -0.15 -0.28 8.79 22.78 0.20 -0.08 16 9 C -0.06 0.23 10.09 22.30 0.22 0.45 16 10 C -0.03 0.10 10.21 84.31 0.86 0.96 16 11 N -0.12 -0.28 2.59 -351.70 -0.91 -1.19 16 12 C -0.32 -0.90 9.30 84.69 0.79 -0.11 16 13 H 0.18 -0.48 7.90 -2.91 -0.02 -0.50 16 14 C 0.04 0.19 4.97 85.26 0.42 0.62 16 15 N -0.78 -6.95 11.07 21.83 0.24 -6.71 16 16 Si 1.01 1.98 29.59 68.60 2.03 4.01 16 17 H -0.25 -0.65 7.11 99.48 0.71 0.05 16 18 H -0.28 -1.33 7.11 99.48 0.71 -0.62 16 19 H -0.25 -0.51 7.11 99.48 0.71 0.20 16 20 C -0.02 -0.06 8.93 84.46 0.75 0.69 16 21 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 22 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 23 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 24 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 25 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 26 H 0.43 -1.73 8.92 -92.71 -0.83 -2.56 16 27 H 0.14 0.50 6.44 -2.91 -0.02 0.48 16 28 H 0.19 -1.97 8.06 -2.91 -0.02 -1.99 16 29 H 0.21 -2.04 8.01 -2.91 -0.02 -2.07 16 30 H 0.32 2.41 8.30 -92.71 -0.77 1.64 16 31 H 0.18 0.80 6.02 -2.91 -0.02 0.78 16 Total: 0.00 -15.89 271.95 4.87 -11.02 By element: Atomic # 1 Polarization: -6.52 SS G_CDS: 0.32 Total: -6.20 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.79 Total: 9.97 kcal Atomic # 7 Polarization: -8.14 SS G_CDS: -2.97 Total: -11.11 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.30 Total: -7.69 kcal Atomic # 14 Polarization: 1.98 SS G_CDS: 2.03 Total: 4.01 kcal Total: -15.89 4.87 -11.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020281528.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.281 kcal (2) G-P(sol) polarization free energy of solvation -15.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds