Wall clock time and date at job start Sun Mar 29 2020 21:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.60580 * 2 1 4 4 C 1.52252 * 109.75027 * 120.42542 * 2 1 3 5 5 C 1.39017 * 124.27705 * 317.16438 * 4 2 1 6 6 C 1.33023 * 115.65816 * 179.97438 * 5 4 2 7 7 S 1.75787 * 109.60694 * 0.02562 * 6 5 4 8 8 C 1.34799 * 122.07558 * 137.15784 * 4 2 1 9 9 C 1.51412 * 123.96133 * 0.09404 * 8 4 2 10 10 C 1.53351 * 108.07131 * 15.53668 * 9 8 4 11 11 N 1.46899 * 109.60768 * 239.66175 * 2 1 3 12 12 C 1.46901 * 111.00450 * 63.27053 * 11 2 1 13 13 C 1.50699 * 109.47227 * 65.08216 * 12 11 2 14 14 H 1.07995 * 119.99835 * 354.72341 * 13 12 11 15 15 C 1.37878 * 119.99972 * 175.00085 * 13 12 11 16 16 N 1.31515 * 119.99812 * 359.72620 * 15 13 12 17 17 Si 1.86797 * 119.99942 * 179.72384 * 15 13 12 18 18 H 1.48498 * 109.47155 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47133 * 120.00299 * 17 15 13 20 20 H 1.48507 * 109.47088 * 240.00006 * 17 15 13 21 21 H 1.09006 * 109.47111 * 180.33652 * 1 2 3 22 22 H 1.08997 * 109.47236 * 300.34184 * 1 2 3 23 23 H 1.09007 * 109.46984 * 60.34065 * 1 2 3 24 24 H 1.07997 * 122.16813 * 359.92546 * 5 4 2 25 25 H 1.08000 * 125.19282 * 180.02562 * 6 5 4 26 26 H 1.08996 * 109.74421 * 135.19081 * 9 8 4 27 27 H 1.08992 * 109.74437 * 255.90719 * 9 8 4 28 28 H 1.08997 * 109.54217 * 191.27797 * 10 9 8 29 29 H 1.09003 * 109.52782 * 71.04383 * 10 9 8 30 30 H 1.09011 * 109.46412 * 305.08362 * 12 11 2 31 31 H 1.08999 * 109.47283 * 185.08530 * 12 11 2 32 32 H 0.97001 * 119.99855 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0445 -0.7257 1.2356 5 6 1.5163 -0.5695 2.5120 6 6 2.0979 -1.2886 3.4680 7 16 3.4023 -2.2433 2.7771 8 6 3.0746 -1.5933 1.1792 9 6 3.8230 -1.9363 -0.0916 10 6 3.4814 -0.8762 -1.1457 11 7 2.0230 -0.6990 -1.1943 12 6 1.6186 0.0031 -2.4197 13 6 2.2860 1.3533 -2.4686 14 1 2.8761 1.6946 -1.6310 15 6 2.1385 2.1554 -3.5804 16 7 1.4199 1.7397 -4.6004 17 14 2.9594 3.8323 -3.6378 18 1 3.7046 4.0622 -2.3740 19 1 3.9013 3.8833 -4.7848 20 1 1.9244 4.8848 -3.8000 21 1 -0.3634 -1.0277 0.0060 22 1 -0.3633 0.5191 0.8869 23 1 -0.3633 0.5086 -0.8931 24 1 0.6879 0.0932 2.7143 25 1 1.8124 -1.2863 4.5096 26 1 4.8959 -1.9324 0.1005 27 1 3.5153 -2.9200 -0.4459 28 1 3.8416 -1.2027 -2.1212 29 1 3.9546 0.0688 -0.8787 30 1 0.5362 0.1323 -2.4240 31 1 1.9181 -0.5820 -3.2893 32 1 1.3164 2.3038 -5.3827 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032814857.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:09 Heat of formation + Delta-G solvation = 31.359675 kcal Electronic energy + Delta-G solvation = -14954.350093 eV Core-core repulsion = 12620.145858 eV Total energy + Delta-G solvation = -2334.204235 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.10221 -35.86375 -32.92864 -32.13676 -30.07900 -26.94684 -26.13065 -24.02642 -22.53971 -21.48135 -19.83511 -17.64848 -16.89882 -15.97172 -15.47811 -14.81061 -14.18373 -14.08505 -13.66765 -13.07763 -12.72839 -12.48075 -12.05059 -11.83425 -11.74488 -11.22655 -11.12681 -10.95624 -10.84238 -10.72529 -10.55932 -10.19266 -9.95635 -9.88559 -9.46644 -8.44574 -8.24636 -7.98017 -7.18617 -6.05027 -4.14431 1.32486 1.92185 2.27991 3.06069 3.24644 3.33263 3.36751 4.38651 4.88946 5.13440 5.23907 5.27041 5.53416 5.64367 5.80960 5.89176 6.03703 6.09332 6.13147 6.32174 6.38370 6.46955 6.65088 6.71172 6.79668 6.91405 6.94958 7.25835 7.52714 7.88650 8.04594 8.26511 8.28148 8.96312 9.52813 10.99678 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.037789 B = 0.006902 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.776599 B = 4055.809316 C = 4164.265929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.148 3.852 3 H 0.062 0.938 4 C -0.098 4.098 5 C -0.115 4.115 6 C -0.226 4.226 7 S 0.059 5.941 8 C -0.161 4.161 9 C -0.046 4.046 10 C 0.072 3.928 11 N -0.537 5.537 12 C 0.184 3.816 13 C -0.550 4.550 14 H 0.056 0.944 15 C 0.066 3.934 16 N -0.890 5.890 17 Si 0.887 3.113 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.053 0.947 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.135 0.865 25 H 0.158 0.842 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 -5.820 12.237 13.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.037 3.963 3 H 0.079 0.921 4 C -0.110 4.110 5 C -0.146 4.146 6 C -0.361 4.361 7 S 0.324 5.676 8 C -0.278 4.278 9 C -0.085 4.085 10 C -0.058 4.058 11 N -0.261 5.261 12 C 0.059 3.941 13 C -0.589 4.589 14 H 0.075 0.925 15 C -0.137 4.137 16 N -0.528 5.528 17 Si 0.715 3.285 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.153 0.847 25 H 0.176 0.824 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.725 -7.285 12.685 14.880 hybrid contribution -0.233 2.830 -0.538 2.890 sum 2.493 -4.455 12.148 13.177 Atomic orbital electron populations 1.21738 0.94212 1.01569 1.01549 1.20341 0.94885 0.94931 0.86157 0.92075 1.19930 0.96333 0.99213 0.95497 1.19985 1.01591 1.01224 0.91802 1.25209 1.02809 1.05163 1.02946 1.83851 1.35274 1.46956 1.01552 1.24834 1.02501 1.03194 0.97281 1.20501 0.97349 1.00570 0.90120 1.21855 0.90163 0.96318 0.97481 1.62454 1.10428 1.50033 1.03202 1.19847 0.96631 0.91571 0.86026 1.21791 1.32107 1.02865 1.02134 0.92547 1.24946 0.95062 0.98097 0.95552 1.69950 1.39505 1.37271 1.06112 0.86620 0.79404 0.84477 0.78024 1.19870 1.20922 1.20927 0.92745 0.93424 0.91108 0.84689 0.82402 0.91171 0.90198 0.90492 0.94299 0.94716 0.94582 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.75 37.16 0.33 -2.07 16 2 C 0.15 2.92 2.41 -68.09 -0.16 2.76 16 3 H 0.06 1.35 6.63 -51.93 -0.34 1.01 16 4 C -0.10 -1.73 5.45 -104.78 -0.57 -2.30 16 5 C -0.11 -1.73 9.45 -41.10 -0.39 -2.12 16 6 C -0.23 -3.03 11.21 28.92 0.32 -2.71 16 7 S 0.06 0.82 23.32 -107.50 -2.51 -1.69 16 8 C -0.16 -2.70 6.42 -35.18 -0.23 -2.93 16 9 C -0.05 -0.74 6.50 -27.35 -0.18 -0.92 16 10 C 0.07 1.41 4.90 -3.59 -0.02 1.39 16 11 N -0.54 -11.49 4.57 -228.24 -1.04 -12.53 16 12 C 0.18 4.63 4.86 -4.98 -0.02 4.60 16 13 C -0.55 -14.76 7.71 -34.44 -0.27 -15.03 16 14 H 0.06 1.52 5.98 -52.49 -0.31 1.21 16 15 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 17 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.05 0.73 7.25 -51.93 -0.38 0.35 16 23 H 0.07 1.40 6.38 -51.93 -0.33 1.07 16 24 H 0.14 1.80 7.30 -52.49 -0.38 1.41 16 25 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.51 7.97 -51.93 -0.41 1.09 16 29 H 0.04 0.81 7.08 -51.93 -0.37 0.45 16 30 H 0.03 0.92 6.16 -51.92 -0.32 0.60 16 31 H 0.04 0.98 8.10 -51.93 -0.42 0.56 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 268.80 15.07 4.05 4.05 Total: -1.00 -28.42 268.80 -9.16 -37.58 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -4.10 Total: -1.02 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -1.28 Total: -17.59 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.31 Total: -37.49 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.42 -9.16 -37.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032814857.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.944 kcal (2) G-P(sol) polarization free energy of solvation -28.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds