Wall clock time and date at job start Sun Mar 29 2020 21:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.60580 * 2 1 4 4 C 1.52252 * 109.75027 * 120.42542 * 2 1 3 5 5 C 1.39017 * 124.27705 * 317.16438 * 4 2 1 6 6 C 1.33023 * 115.65816 * 179.97438 * 5 4 2 7 7 S 1.75787 * 109.60694 * 0.02562 * 6 5 4 8 8 C 1.34799 * 122.07558 * 137.15784 * 4 2 1 9 9 C 1.51412 * 123.96133 * 0.09404 * 8 4 2 10 10 C 1.53351 * 108.07131 * 15.53668 * 9 8 4 11 11 N 1.46899 * 109.60768 * 239.66175 * 2 1 3 12 12 C 1.46901 * 111.00450 * 63.27053 * 11 2 1 13 13 C 1.50699 * 109.47227 * 65.08216 * 12 11 2 14 14 H 1.07995 * 119.99835 * 354.72341 * 13 12 11 15 15 C 1.37878 * 119.99972 * 175.00085 * 13 12 11 16 16 N 1.31515 * 119.99812 * 359.72620 * 15 13 12 17 17 Si 1.86797 * 119.99942 * 179.72384 * 15 13 12 18 18 H 1.48498 * 109.47155 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47133 * 120.00299 * 17 15 13 20 20 H 1.48507 * 109.47088 * 240.00006 * 17 15 13 21 21 H 1.09006 * 109.47111 * 180.33652 * 1 2 3 22 22 H 1.08997 * 109.47236 * 300.34184 * 1 2 3 23 23 H 1.09007 * 109.46984 * 60.34065 * 1 2 3 24 24 H 1.07997 * 122.16813 * 359.92546 * 5 4 2 25 25 H 1.08000 * 125.19282 * 180.02562 * 6 5 4 26 26 H 1.08996 * 109.74421 * 135.19081 * 9 8 4 27 27 H 1.08992 * 109.74437 * 255.90719 * 9 8 4 28 28 H 1.08997 * 109.54217 * 191.27797 * 10 9 8 29 29 H 1.09003 * 109.52782 * 71.04383 * 10 9 8 30 30 H 1.09011 * 109.46412 * 305.08362 * 12 11 2 31 31 H 1.08999 * 109.47283 * 185.08530 * 12 11 2 32 32 H 0.97001 * 119.99855 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0445 -0.7257 1.2356 5 6 1.5163 -0.5695 2.5120 6 6 2.0979 -1.2886 3.4680 7 16 3.4023 -2.2433 2.7771 8 6 3.0746 -1.5933 1.1792 9 6 3.8230 -1.9363 -0.0916 10 6 3.4814 -0.8762 -1.1457 11 7 2.0230 -0.6990 -1.1943 12 6 1.6186 0.0031 -2.4197 13 6 2.2860 1.3533 -2.4686 14 1 2.8761 1.6946 -1.6310 15 6 2.1385 2.1554 -3.5804 16 7 1.4199 1.7397 -4.6004 17 14 2.9594 3.8323 -3.6378 18 1 3.7046 4.0622 -2.3740 19 1 3.9013 3.8833 -4.7848 20 1 1.9244 4.8848 -3.8000 21 1 -0.3634 -1.0277 0.0060 22 1 -0.3633 0.5191 0.8869 23 1 -0.3633 0.5086 -0.8931 24 1 0.6879 0.0932 2.7143 25 1 1.8124 -1.2863 4.5096 26 1 4.8959 -1.9324 0.1005 27 1 3.5153 -2.9200 -0.4459 28 1 3.8416 -1.2027 -2.1212 29 1 3.9546 0.0688 -0.8787 30 1 0.5362 0.1323 -2.4240 31 1 1.9181 -0.5820 -3.2893 32 1 1.3164 2.3038 -5.3827 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032814857.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:09 Heat of formation + Delta-G solvation = 14.377269 kcal Electronic energy + Delta-G solvation = -14955.086505 eV Core-core repulsion = 12620.145858 eV Total energy + Delta-G solvation = -2334.940647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54394 -37.34415 -34.80095 -33.74199 -31.63283 -28.61512 -27.75620 -25.71722 -24.06915 -22.90964 -21.43294 -19.23064 -18.25828 -17.73075 -16.92248 -16.70342 -15.71512 -15.49646 -15.21000 -14.54823 -14.45519 -13.94124 -13.44231 -13.41157 -13.16083 -13.06303 -12.77988 -12.52564 -12.44587 -12.33079 -12.04745 -11.87244 -11.78770 -11.68514 -11.12289 -10.58845 -9.37728 -9.24902 -8.94986 -8.15483 -6.34933 0.15787 0.77905 1.13511 1.34427 1.36381 1.47448 1.83680 2.36402 3.08926 3.28091 3.86141 3.96806 4.19281 4.40457 4.47887 4.53264 4.55894 4.65722 4.83272 4.88693 4.97025 5.06521 5.17259 5.24602 5.29266 5.32076 5.40430 5.49520 5.67611 5.77949 6.06097 6.28840 6.53159 6.86156 7.36443 8.86653 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.037789 B = 0.006902 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.776599 B = 4055.809316 C = 4164.265929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.147 3.853 3 H 0.031 0.969 4 C -0.116 4.116 5 C -0.134 4.134 6 C -0.211 4.211 7 S 0.110 5.890 8 C -0.190 4.190 9 C -0.037 4.037 10 C 0.072 3.928 11 N -0.538 5.538 12 C 0.199 3.801 13 C -0.554 4.554 14 H 0.051 0.949 15 C 0.015 3.985 16 N -0.924 5.924 17 Si 0.954 3.046 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.057 0.943 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.150 0.850 25 H 0.194 0.806 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.019 0.981 30 H 0.016 0.984 31 H 0.008 0.992 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 -6.090 14.704 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.036 3.964 3 H 0.049 0.951 4 C -0.128 4.128 5 C -0.165 4.165 6 C -0.346 4.346 7 S 0.375 5.625 8 C -0.308 4.308 9 C -0.076 4.076 10 C -0.058 4.058 11 N -0.261 5.261 12 C 0.072 3.928 13 C -0.593 4.593 14 H 0.069 0.931 15 C -0.184 4.184 16 N -0.564 5.564 17 Si 0.779 3.221 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.076 0.924 22 H 0.094 0.906 23 H 0.062 0.938 24 H 0.167 0.833 25 H 0.211 0.789 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.026 0.974 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.446 -7.566 15.166 17.296 hybrid contribution -0.439 2.846 -1.229 3.131 sum 3.006 -4.721 13.938 15.019 Atomic orbital electron populations 1.21665 0.93213 1.01791 1.01580 1.20286 0.95777 0.93598 0.86712 0.95150 1.19851 0.97445 1.00080 0.95468 1.20054 1.02794 1.02672 0.90957 1.25681 1.01479 1.03230 1.04242 1.83678 1.34675 1.45732 0.98439 1.25000 1.02573 1.03888 0.99296 1.20406 0.98855 0.99296 0.89086 1.21868 0.88749 0.96712 0.98489 1.62416 1.11732 1.49393 1.02586 1.19492 0.95310 0.90938 0.87011 1.21968 1.31824 1.03608 1.01936 0.93095 1.25749 0.95673 1.01829 0.95198 1.70060 1.40783 1.38792 1.06747 0.85574 0.78497 0.79924 0.78099 1.19521 1.20252 1.20255 0.92352 0.90555 0.93799 0.83260 0.78887 0.88755 0.89411 0.91424 0.96297 0.96554 0.97404 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 8.75 71.98 0.63 -3.92 16 2 C 0.15 5.93 2.41 44.67 0.11 6.04 16 3 H 0.03 1.40 6.63 -2.39 -0.02 1.39 16 4 C -0.12 -3.96 5.45 -19.97 -0.11 -4.07 16 5 C -0.13 -3.70 9.45 21.29 0.20 -3.49 16 6 C -0.21 -4.79 11.21 66.66 0.75 -4.05 16 7 S 0.11 2.65 23.32 -56.49 -1.32 1.33 16 8 C -0.19 -6.05 6.42 25.12 0.16 -5.88 16 9 C -0.04 -1.16 6.50 30.19 0.20 -0.96 16 10 C 0.07 2.88 4.90 86.40 0.42 3.30 16 11 N -0.54 -23.81 4.57 -876.01 -4.00 -27.81 16 12 C 0.20 10.50 4.86 85.56 0.42 10.92 16 13 C -0.55 -30.84 7.71 25.60 0.20 -30.64 16 14 H 0.05 2.84 5.98 -2.91 -0.02 2.83 16 15 C 0.02 0.85 5.46 84.65 0.46 1.31 16 16 N -0.92 -54.78 13.29 21.45 0.28 -54.49 16 17 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 22 H 0.08 2.28 7.25 -2.39 -0.02 2.27 16 23 H 0.04 1.80 6.38 -2.38 -0.02 1.79 16 24 H 0.15 3.56 7.30 -2.91 -0.02 3.54 16 25 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 26 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.07 2.76 7.97 -2.39 -0.02 2.74 16 29 H 0.02 0.82 7.08 -2.39 -0.02 0.80 16 30 H 0.02 0.92 6.16 -2.38 -0.01 0.90 16 31 H 0.01 0.45 8.10 -2.39 -0.02 0.43 16 32 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -62.23 268.80 1.54 -60.69 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.11 Total: 5.64 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 3.43 Total: -31.47 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -3.72 Total: -82.30 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.32 Total: 1.33 kcal Total: -62.23 1.54 -60.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032814857.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.072 kcal (2) G-P(sol) polarization free energy of solvation -62.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds