Wall clock time and date at job start Sun Mar 29 2020 22:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47135 * 2 1 4 4 N 1.46507 * 109.47350 * 119.99992 * 2 1 3 5 5 C 1.46504 * 119.99555 * 294.98043 * 4 2 1 6 6 C 1.50701 * 109.47021 * 263.22592 * 5 4 2 7 7 H 1.08006 * 119.99845 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99859 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99967 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99881 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47034 * 89.99365 * 10 8 6 12 12 H 1.48493 * 109.47037 * 209.99960 * 10 8 6 13 13 H 1.48503 * 109.47113 * 329.99831 * 10 8 6 14 14 C 1.34770 * 120.00057 * 114.97837 * 4 2 1 15 15 O 1.21692 * 120.00042 * 3.67820 * 14 4 2 16 16 C 1.46661 * 119.99837 * 183.67904 * 14 4 2 17 17 C 1.36544 * 125.98563 * 173.52683 * 16 14 4 18 18 C 1.40360 * 106.70448 * 180.02562 * 17 16 14 19 19 C 1.35124 * 107.11929 * 0.02562 * 18 17 16 20 20 O 1.33933 * 108.76748 * 0.02562 * 19 18 17 21 21 H 1.09001 * 109.46713 * 299.99815 * 1 2 3 22 22 H 1.08999 * 109.46740 * 59.99897 * 1 2 3 23 23 H 1.09006 * 109.46569 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47342 * 239.99765 * 2 1 3 25 25 H 1.09001 * 109.47162 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47022 * 300.00078 * 3 2 1 27 27 H 1.09002 * 109.46819 * 60.00055 * 3 2 1 28 28 H 1.08993 * 109.47308 * 23.22745 * 5 4 2 29 29 H 1.08998 * 109.46851 * 143.22862 * 5 4 2 30 30 H 0.96998 * 119.99520 * 180.02562 * 9 8 6 31 31 H 1.08004 * 126.64711 * 0.02562 * 17 16 14 32 32 H 1.08010 * 126.43784 * 180.02562 * 18 17 16 33 33 H 1.07996 * 125.61710 * 180.26062 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7574 -0.1292 2.5240 6 6 2.9554 0.6642 2.9782 7 1 3.8242 0.7428 2.3413 8 6 2.9424 1.2899 4.2068 9 7 1.8844 1.1946 4.9821 10 14 4.4277 2.2727 4.7702 11 1 4.2846 3.6831 4.3281 12 1 4.5198 2.2251 6.2515 13 1 5.6595 1.6912 4.1787 14 6 2.7077 -1.8424 1.0751 15 8 2.9825 -2.2739 -0.0291 16 6 3.1268 -2.5757 2.2741 17 6 3.7163 -3.8071 2.2964 18 6 3.9431 -4.1215 3.6454 19 6 3.4874 -3.0817 4.3782 20 8 2.9954 -2.1526 3.5485 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 0.8858 0.5235 2.4775 29 1 1.5685 -0.9381 3.2297 30 1 1.8751 1.6351 5.8462 31 1 3.9607 -4.4203 1.4416 32 1 4.3967 -5.0248 4.0261 33 1 3.5185 -3.0099 5.4553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530483.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:56 Heat of formation + Delta-G solvation = -19.947477 kcal Electronic energy + Delta-G solvation = -17527.878371 eV Core-core repulsion = 14748.696420 eV Total energy + Delta-G solvation = -2779.181951 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.97536 -38.96657 -35.87717 -33.00276 -32.39692 -31.44861 -28.94508 -27.24939 -26.58608 -23.31868 -22.90506 -21.11581 -20.17132 -18.70747 -17.09734 -16.45055 -16.11925 -15.43723 -15.22934 -14.42921 -13.98524 -13.65579 -13.06926 -12.71537 -12.50488 -12.44081 -12.29448 -12.11530 -11.65665 -11.62283 -11.21029 -10.99882 -10.78928 -10.64935 -10.30087 -9.96656 -9.66110 -9.45374 -9.41723 -8.48979 -8.15065 -7.69287 -6.11615 -4.15365 1.79317 2.91257 3.24421 3.31573 3.35886 3.44495 3.92231 3.98788 4.38778 5.21191 5.23893 5.43820 5.45214 5.58030 5.66705 5.80634 6.09008 6.14887 6.18480 6.24752 6.35142 6.40097 6.44219 6.71981 6.79524 6.88177 6.98033 7.32409 7.50397 7.67943 7.83023 8.12834 8.24999 8.80010 8.93520 9.49252 10.95987 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.013339 C = 0.008521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.909456 B = 2098.619623 C = 3285.373651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.135 3.865 3 C -0.152 4.152 4 N -0.580 5.580 5 C 0.232 3.768 6 C -0.519 4.519 7 H 0.057 0.943 8 C 0.067 3.933 9 N -0.892 5.892 10 Si 0.890 3.110 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.596 3.404 15 O -0.561 6.561 16 C -0.052 4.052 17 C -0.151 4.151 18 C -0.241 4.241 19 C -0.018 4.018 20 O -0.105 6.105 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.263 0.737 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.425 -4.715 -2.751 5.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 C -0.210 4.210 4 N -0.309 5.309 5 C 0.113 3.887 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.135 4.135 9 N -0.531 5.531 10 Si 0.718 3.282 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.384 3.616 15 O -0.444 6.444 16 C -0.105 4.105 17 C -0.172 4.172 18 C -0.260 4.260 19 C -0.090 4.090 20 O 0.003 5.997 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.167 0.833 32 H 0.163 0.837 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -0.533 -4.523 -3.060 5.487 hybrid contribution 0.990 0.435 0.709 1.293 sum 0.457 -4.089 -2.351 4.738 Atomic orbital electron populations 1.22142 0.95622 1.01748 1.02168 1.20943 0.93554 0.93710 0.88678 1.22054 1.01692 0.95290 1.01923 1.48309 1.51616 1.21219 1.09761 1.19650 0.97453 0.94921 0.76657 1.21363 1.01096 1.31122 1.02202 0.92442 1.24835 0.96002 0.96384 0.96254 1.69923 1.28456 1.43865 1.10867 0.86615 0.83307 0.80469 0.77809 1.20625 1.21154 1.19912 1.16705 0.78284 0.80853 0.85721 1.90742 1.58874 1.69727 1.25082 1.22079 1.08329 0.96241 0.83867 1.21757 1.01937 0.95748 0.97739 1.21656 1.09530 1.01648 0.93141 1.24445 0.99069 0.88548 0.96901 1.84789 1.60406 1.39767 1.14706 0.91754 0.92100 0.92922 0.89367 0.92495 0.93020 0.90707 0.94175 0.93106 0.92772 0.83281 0.83699 0.78503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.26 37.16 0.34 -2.20 16 2 C 0.13 2.52 3.23 -67.92 -0.22 2.31 16 3 C -0.15 -2.71 8.66 37.16 0.32 -2.39 16 4 N -0.58 -12.71 2.38 -169.00 -0.40 -13.11 16 5 C 0.23 5.59 3.91 -5.19 -0.02 5.57 16 6 C -0.52 -13.51 7.49 -34.44 -0.26 -13.77 16 7 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -24.38 13.29 55.43 0.74 -23.64 16 10 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.60 13.50 7.58 -12.86 -0.10 13.41 16 15 O -0.56 -13.24 16.21 5.20 0.08 -13.16 16 16 C -0.05 -1.11 6.74 -36.80 -0.25 -1.36 16 17 C -0.15 -2.78 10.63 -39.40 -0.42 -3.20 16 18 C -0.24 -3.85 10.87 -39.89 -0.43 -4.28 16 19 C -0.02 -0.31 12.08 29.62 0.36 0.05 16 20 O -0.11 -2.28 6.58 4.99 0.03 -2.25 16 21 H 0.06 1.08 6.91 -51.93 -0.36 0.72 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.09 1.67 6.91 -51.93 -0.36 1.31 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.47 7.09 -51.93 -0.37 1.10 16 28 H 0.04 1.00 6.49 -51.93 -0.34 0.66 16 29 H 0.05 1.31 5.43 -51.93 -0.28 1.03 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.15 2.50 8.06 -52.48 -0.42 2.08 16 32 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 33 H 0.20 2.69 8.06 -52.49 -0.42 2.27 16 LS Contribution 280.88 15.07 4.23 4.23 Total: -1.00 -29.37 280.88 -5.31 -34.68 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.21 Total: 1.67 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.77 Total: -4.19 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.33 Total: -36.75 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.12 Total: -15.40 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.37 -5.31 -34.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530483.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.737 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds