Wall clock time and date at job start Sun Mar 29 2020 22:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47135 * 2 1 4 4 N 1.46507 * 109.47350 * 119.99992 * 2 1 3 5 5 C 1.46504 * 119.99555 * 294.98043 * 4 2 1 6 6 C 1.50701 * 109.47021 * 263.22592 * 5 4 2 7 7 H 1.08006 * 119.99845 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99859 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99967 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99881 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47034 * 89.99365 * 10 8 6 12 12 H 1.48493 * 109.47037 * 209.99960 * 10 8 6 13 13 H 1.48503 * 109.47113 * 329.99831 * 10 8 6 14 14 C 1.34770 * 120.00057 * 114.97837 * 4 2 1 15 15 O 1.21692 * 120.00042 * 3.67820 * 14 4 2 16 16 C 1.46661 * 119.99837 * 183.67904 * 14 4 2 17 17 C 1.36544 * 125.98563 * 173.52683 * 16 14 4 18 18 C 1.40360 * 106.70448 * 180.02562 * 17 16 14 19 19 C 1.35124 * 107.11929 * 0.02562 * 18 17 16 20 20 O 1.33933 * 108.76748 * 0.02562 * 19 18 17 21 21 H 1.09001 * 109.46713 * 299.99815 * 1 2 3 22 22 H 1.08999 * 109.46740 * 59.99897 * 1 2 3 23 23 H 1.09006 * 109.46569 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47342 * 239.99765 * 2 1 3 25 25 H 1.09001 * 109.47162 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47022 * 300.00078 * 3 2 1 27 27 H 1.09002 * 109.46819 * 60.00055 * 3 2 1 28 28 H 1.08993 * 109.47308 * 23.22745 * 5 4 2 29 29 H 1.08998 * 109.46851 * 143.22862 * 5 4 2 30 30 H 0.96998 * 119.99520 * 180.02562 * 9 8 6 31 31 H 1.08004 * 126.64711 * 0.02562 * 17 16 14 32 32 H 1.08010 * 126.43784 * 180.02562 * 18 17 16 33 33 H 1.07996 * 125.61710 * 180.26062 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7574 -0.1292 2.5240 6 6 2.9554 0.6642 2.9782 7 1 3.8242 0.7428 2.3413 8 6 2.9424 1.2899 4.2068 9 7 1.8844 1.1946 4.9821 10 14 4.4277 2.2727 4.7702 11 1 4.2846 3.6831 4.3281 12 1 4.5198 2.2251 6.2515 13 1 5.6595 1.6912 4.1787 14 6 2.7077 -1.8424 1.0751 15 8 2.9825 -2.2739 -0.0291 16 6 3.1268 -2.5757 2.2741 17 6 3.7163 -3.8071 2.2964 18 6 3.9431 -4.1215 3.6454 19 6 3.4874 -3.0817 4.3782 20 8 2.9954 -2.1526 3.5485 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 0.8858 0.5235 2.4775 29 1 1.5685 -0.9381 3.2297 30 1 1.8751 1.6351 5.8462 31 1 3.9607 -4.4203 1.4416 32 1 4.3967 -5.0248 4.0261 33 1 3.5185 -3.0099 5.4553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530483.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:56 Heat of formation + Delta-G solvation = -37.224425 kcal Electronic energy + Delta-G solvation = -17528.627556 eV Core-core repulsion = 14748.696420 eV Total energy + Delta-G solvation = -2779.931135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.45224 -40.65191 -37.56854 -34.89235 -33.87905 -33.12619 -30.41856 -29.16237 -27.99698 -25.12341 -24.58439 -22.52083 -21.67344 -20.28765 -18.86704 -18.30434 -17.73101 -17.03980 -16.83671 -16.29123 -15.65530 -15.13239 -14.73493 -14.29564 -14.05888 -13.97514 -13.90879 -13.49823 -13.24391 -13.12173 -12.91011 -12.75790 -12.49638 -12.30735 -12.08042 -11.64363 -11.55075 -11.17658 -10.85204 -10.51599 -9.72323 -9.34756 -8.14036 -6.23682 0.24201 1.38925 1.41612 1.50235 1.56338 1.94348 2.26594 2.37572 2.51150 3.17239 3.70779 4.04153 4.11793 4.20106 4.23883 4.38948 4.65038 4.76388 4.80388 4.89855 4.96111 4.97004 5.01736 5.10434 5.27708 5.42308 5.45984 5.56207 5.74037 5.81957 6.12739 6.19958 6.46540 6.84064 7.15205 7.43987 8.92831 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.013339 C = 0.008521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.909456 B = 2098.619623 C = 3285.373651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.124 3.876 3 C -0.142 4.142 4 N -0.584 5.584 5 C 0.252 3.748 6 C -0.519 4.519 7 H 0.040 0.960 8 C 0.030 3.970 9 N -0.917 5.917 10 Si 0.945 3.055 11 H -0.275 1.275 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.587 3.413 15 O -0.581 6.581 16 C -0.100 4.100 17 C -0.140 4.140 18 C -0.226 4.226 19 C -0.022 4.022 20 O -0.139 6.139 21 H 0.052 0.948 22 H 0.095 0.905 23 H 0.050 0.950 24 H 0.087 0.913 25 H 0.037 0.963 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.028 0.972 29 H 0.037 0.963 30 H 0.265 0.735 31 H 0.163 0.837 32 H 0.188 0.812 33 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 -5.173 -2.433 5.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.200 4.200 4 N -0.313 5.313 5 C 0.132 3.868 6 C -0.558 4.558 7 H 0.058 0.942 8 C -0.170 4.170 9 N -0.556 5.556 10 Si 0.771 3.229 11 H -0.201 1.201 12 H -0.203 1.203 13 H -0.204 1.204 14 C 0.377 3.623 15 O -0.466 6.466 16 C -0.152 4.152 17 C -0.160 4.160 18 C -0.244 4.244 19 C -0.093 4.093 20 O -0.032 6.032 21 H 0.071 0.929 22 H 0.114 0.886 23 H 0.069 0.931 24 H 0.105 0.895 25 H 0.057 0.943 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.181 0.819 32 H 0.205 0.795 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.006 -4.976 -2.754 5.688 hybrid contribution 0.844 0.498 0.623 1.162 sum 0.839 -4.478 -2.131 5.030 Atomic orbital electron populations 1.22069 0.93372 1.01999 1.03259 1.21240 0.95408 0.93761 0.87451 1.21971 1.00411 0.94921 1.02704 1.48366 1.51669 1.21382 1.09872 1.19236 0.96212 0.93842 0.77527 1.21378 1.00980 1.31315 1.02145 0.94164 1.25423 0.98162 0.97184 0.96279 1.70002 1.29812 1.44625 1.11206 0.85760 0.80217 0.79274 0.77614 1.20101 1.20321 1.20428 1.17000 0.78080 0.80992 0.86239 1.90700 1.59840 1.70250 1.25835 1.22087 1.11581 0.97801 0.83746 1.22133 0.99863 0.94509 0.99532 1.22075 1.08289 1.02515 0.91543 1.25280 0.97858 0.88037 0.98145 1.84716 1.61682 1.41623 1.15196 0.92911 0.88646 0.93102 0.89486 0.94346 0.89209 0.92817 0.95388 0.94588 0.92537 0.81928 0.79496 0.75340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 9.26 71.98 0.67 -3.99 16 2 C 0.12 4.65 3.23 44.99 0.15 4.79 16 3 C -0.14 -5.06 8.66 71.98 0.62 -4.43 16 4 N -0.58 -26.22 2.38 -806.83 -1.92 -28.13 16 5 C 0.25 12.46 3.91 85.63 0.33 12.80 16 6 C -0.52 -27.54 7.49 25.60 0.19 -27.35 16 7 H 0.04 2.24 7.81 -2.91 -0.02 2.21 16 8 C 0.03 1.56 5.46 84.66 0.46 2.02 16 9 N -0.92 -50.23 13.29 21.45 0.28 -49.95 16 10 Si 0.95 42.48 29.54 68.60 2.03 44.51 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 C 0.59 27.19 7.58 86.44 0.65 27.84 16 15 O -0.58 -27.85 16.21 -4.32 -0.07 -27.92 16 16 C -0.10 -4.31 6.74 24.07 0.16 -4.14 16 17 C -0.14 -4.96 10.63 22.39 0.24 -4.72 16 18 C -0.23 -6.57 10.87 22.07 0.24 -6.33 16 19 C -0.02 -0.74 12.08 67.10 0.81 0.07 16 20 O -0.14 -6.05 6.58 -5.04 -0.03 -6.08 16 21 H 0.05 1.76 6.91 -2.39 -0.02 1.75 16 22 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.09 3.29 6.91 -2.39 -0.02 3.28 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.05 2.12 7.09 -2.39 -0.02 2.11 16 28 H 0.03 1.44 6.49 -2.39 -0.02 1.43 16 29 H 0.04 1.92 5.43 -2.39 -0.01 1.91 16 30 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 31 H 0.16 5.20 8.06 -2.91 -0.02 5.18 16 32 H 0.19 3.78 8.06 -2.91 -0.02 3.75 16 33 H 0.23 5.64 8.06 -2.91 -0.02 5.62 16 Total: -1.00 -63.67 280.88 5.92 -57.74 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 1.10 Total: 13.27 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 4.53 Total: -3.43 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -1.63 Total: -78.08 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.10 Total: -34.01 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -63.67 5.92 -57.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530483.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.519 kcal (2) G-P(sol) polarization free energy of solvation -63.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds