Wall clock time and date at job start Sun Mar 29 2020 22:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47127 * 2 1 4 4 N 1.46499 * 109.47036 * 179.97438 * 3 2 1 5 5 C 1.36968 * 119.99762 * 94.50462 * 4 3 2 6 6 H 1.07995 * 120.00034 * 167.68750 * 5 4 3 7 7 C 1.38981 * 119.99710 * 347.68646 * 5 4 3 8 8 N 1.31404 * 120.00552 * 343.24208 * 7 5 4 9 9 Si 1.86805 * 119.99715 * 163.23902 * 7 5 4 10 10 H 1.48496 * 109.47076 * 59.99981 * 9 7 5 11 11 H 1.48500 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47234 * 299.99970 * 9 7 5 13 13 C 1.34767 * 120.00043 * 274.50418 * 4 3 2 14 14 O 1.21653 * 120.00041 * 184.68642 * 13 4 3 15 15 C 1.47293 * 120.00310 * 4.68630 * 13 4 3 16 16 C 1.47029 * 127.19847 * 3.69223 * 15 13 4 17 17 C 1.34170 * 105.96128 * 180.14905 * 16 15 13 18 18 O 1.34216 * 109.14616 * 359.60764 * 17 16 15 19 19 C 1.33674 * 110.90952 * 0.26166 * 18 17 16 20 20 C 1.50695 * 125.81168 * 179.97438 * 19 18 17 21 21 H 1.08998 * 109.46889 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46912 * 299.99976 * 1 2 3 23 23 H 1.09003 * 109.46974 * 59.99893 * 1 2 3 24 24 H 1.09000 * 109.47269 * 240.00393 * 2 1 3 25 25 H 1.08992 * 109.47407 * 120.00315 * 2 1 3 26 26 H 1.09000 * 109.46725 * 60.00060 * 3 2 1 27 27 H 1.09000 * 109.46920 * 300.00282 * 3 2 1 28 28 H 0.97000 * 120.00491 * 180.02562 * 8 7 5 29 29 H 1.08007 * 127.01862 * 0.02562 * 16 15 13 30 30 H 1.08003 * 125.42361 * 179.86891 * 17 16 15 31 31 H 1.08999 * 109.47141 * 0.02762 * 20 19 18 32 32 H 1.08998 * 109.47352 * 120.02316 * 20 19 18 33 33 H 1.08994 * 109.47375 * 240.02627 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1903 1.5355 -1.1817 6 1 5.2516 1.7352 -1.1763 7 6 3.5198 1.3729 -2.3881 8 7 2.3304 0.8147 -2.4088 9 14 4.3094 1.9480 -3.9804 10 1 5.5932 1.2299 -4.1838 11 1 3.3973 1.6618 -5.1168 12 1 4.5657 3.4088 -3.9064 13 6 4.1784 1.3511 1.1644 14 8 5.3918 1.4367 1.1734 15 6 3.4451 1.1474 2.4255 16 6 1.9977 0.9480 2.5900 17 6 1.7918 0.8101 3.9086 18 8 2.9678 0.8978 4.5494 19 6 3.9680 1.0988 3.6855 20 6 5.4246 1.2471 4.0421 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.8626 0.7008 -3.2509 29 1 1.2522 0.9205 1.8090 30 1 0.8329 0.6495 4.3790 31 1 5.5445 1.1649 5.1223 32 1 6.0005 0.4622 3.5519 33 1 5.7825 2.2216 3.7100 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044372598.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:11 Heat of formation + Delta-G solvation = 8.070678 kcal Electronic energy + Delta-G solvation = -17527.348860 eV Core-core repulsion = 14749.381868 eV Total energy + Delta-G solvation = -2777.966992 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.95191 -38.41399 -35.48136 -33.13494 -31.74473 -31.36893 -30.98107 -26.62020 -25.79607 -24.51320 -22.01290 -20.91132 -20.59583 -18.29773 -17.08741 -16.47930 -15.71078 -15.64039 -14.69411 -14.12164 -13.90838 -13.54757 -13.34740 -12.65760 -12.54245 -12.44583 -12.12460 -11.86836 -11.74213 -11.24765 -11.16573 -10.95160 -10.58500 -10.43198 -10.36825 -10.02269 -9.82037 -8.99428 -8.78782 -8.40927 -7.98187 -7.63855 -6.28585 -3.78712 2.09414 2.70794 3.22063 3.24029 3.28576 3.39937 4.12118 4.42211 4.92226 5.09603 5.18931 5.49798 5.65607 5.77551 5.97055 5.98860 6.03298 6.13401 6.18158 6.30956 6.33013 6.42278 6.67347 6.73646 6.87193 6.91587 6.97652 7.36807 7.50793 7.61893 7.83434 8.13159 8.55316 9.19398 9.45518 10.04726 10.65820 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028670 B = 0.009330 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.396590 B = 3000.435736 C = 3878.379666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.115 3.885 4 N -0.429 5.429 5 C -0.297 4.297 6 H 0.104 0.896 7 C 0.026 3.974 8 N -0.868 5.868 9 Si 0.927 3.073 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.275 1.275 13 C 0.505 3.495 14 O -0.596 6.596 15 C -0.201 4.201 16 C -0.208 4.208 17 C -0.068 4.068 18 O -0.187 6.187 19 C 0.030 3.970 20 C -0.058 4.058 21 H 0.041 0.959 22 H 0.035 0.965 23 H 0.056 0.944 24 H 0.107 0.893 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.100 0.900 28 H 0.267 0.733 29 H 0.184 0.816 30 H 0.198 0.802 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.591 -0.224 7.363 8.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.145 5.145 5 C -0.425 4.425 6 H 0.121 0.879 7 C -0.176 4.176 8 N -0.509 5.509 9 Si 0.754 3.246 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.295 3.705 14 O -0.484 6.484 15 C -0.205 4.205 16 C -0.226 4.226 17 C -0.134 4.134 18 O -0.085 6.085 19 C -0.023 4.023 20 C -0.114 4.114 21 H 0.061 0.939 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.125 0.875 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.201 0.799 30 H 0.214 0.786 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.116 -0.241 7.459 8.522 hybrid contribution -0.170 0.121 -1.027 1.048 sum -4.287 -0.120 6.431 7.730 Atomic orbital electron populations 1.21657 0.97504 1.00158 1.00423 1.22146 0.93711 0.98502 1.02979 1.21979 0.80730 0.97044 1.01097 1.43574 1.05497 1.60563 1.04871 1.19752 0.95305 1.45465 0.81960 0.87854 1.25269 0.96452 0.96500 0.99407 1.70076 1.14074 1.39795 1.26920 0.85984 0.78829 0.79419 0.80408 1.19911 1.20976 1.20017 1.16933 0.86463 0.84603 0.82526 1.90577 1.13403 1.57644 1.86750 1.21600 0.93318 1.10933 0.94676 1.24262 0.96554 1.04822 0.97010 1.23762 0.87914 1.09259 0.92429 1.83644 1.15204 1.71345 1.38307 1.22602 0.90378 1.02129 0.87155 1.20240 0.85589 1.04632 1.00950 0.93943 0.94583 0.92522 0.87488 0.94247 0.93491 0.88183 0.92268 0.79906 0.78554 0.91820 0.89206 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.71 37.16 0.36 -1.98 16 2 C -0.14 -2.82 4.64 -26.73 -0.12 -2.95 16 3 C 0.11 2.60 4.08 -4.04 -0.02 2.59 16 4 N -0.43 -11.26 2.63 -116.07 -0.31 -11.57 16 5 C -0.30 -8.24 9.46 -14.98 -0.14 -8.38 16 6 H 0.10 3.01 7.26 -52.49 -0.38 2.63 16 7 C 0.03 0.67 5.06 -17.46 -0.09 0.58 16 8 N -0.87 -21.68 8.05 55.50 0.45 -21.24 16 9 Si 0.93 20.39 29.59 -169.99 -5.03 15.37 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 C 0.50 13.17 7.59 -12.58 -0.10 13.07 16 14 O -0.60 -16.86 15.28 5.23 0.08 -16.78 16 15 C -0.20 -4.41 6.01 -103.28 -0.62 -5.03 16 16 C -0.21 -3.86 7.33 -37.45 -0.27 -4.13 16 17 C -0.07 -1.07 12.03 29.30 0.35 -0.71 16 18 O -0.19 -3.26 10.52 7.60 0.08 -3.18 16 19 C 0.03 0.58 7.38 -34.94 -0.26 0.32 16 20 C -0.06 -0.95 9.15 36.00 0.33 -0.62 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.04 0.52 7.02 -51.93 -0.36 0.16 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.11 2.58 6.07 -51.93 -0.32 2.27 16 25 H 0.04 0.83 6.06 -51.93 -0.31 0.51 16 26 H 0.05 0.98 4.79 -51.93 -0.25 0.73 16 27 H 0.10 2.42 5.97 -51.93 -0.31 2.11 16 28 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 29 H 0.18 3.26 2.31 -52.48 -0.12 3.14 16 30 H 0.20 2.13 8.06 -52.48 -0.42 1.71 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.54 8.04 -51.93 -0.42 1.13 16 33 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 LS Contribution 266.27 15.07 4.01 4.01 Total: -1.00 -30.04 266.27 -5.01 -35.06 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -3.72 Total: 5.59 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.58 Total: -7.26 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.14 Total: -32.81 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.16 Total: -19.96 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.04 -5.01 -35.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372598.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.126 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds