Wall clock time and date at job start Sun Mar 29 2020 22:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47127 * 2 1 4 4 N 1.46499 * 109.47036 * 179.97438 * 3 2 1 5 5 C 1.36968 * 119.99762 * 94.50462 * 4 3 2 6 6 H 1.07995 * 120.00034 * 167.68750 * 5 4 3 7 7 C 1.38981 * 119.99710 * 347.68646 * 5 4 3 8 8 N 1.31404 * 120.00552 * 343.24208 * 7 5 4 9 9 Si 1.86805 * 119.99715 * 163.23902 * 7 5 4 10 10 H 1.48496 * 109.47076 * 59.99981 * 9 7 5 11 11 H 1.48500 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47234 * 299.99970 * 9 7 5 13 13 C 1.34767 * 120.00043 * 274.50418 * 4 3 2 14 14 O 1.21653 * 120.00041 * 184.68642 * 13 4 3 15 15 C 1.47293 * 120.00310 * 4.68630 * 13 4 3 16 16 C 1.47029 * 127.19847 * 3.69223 * 15 13 4 17 17 C 1.34170 * 105.96128 * 180.14905 * 16 15 13 18 18 O 1.34216 * 109.14616 * 359.60764 * 17 16 15 19 19 C 1.33674 * 110.90952 * 0.26166 * 18 17 16 20 20 C 1.50695 * 125.81168 * 179.97438 * 19 18 17 21 21 H 1.08998 * 109.46889 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46912 * 299.99976 * 1 2 3 23 23 H 1.09003 * 109.46974 * 59.99893 * 1 2 3 24 24 H 1.09000 * 109.47269 * 240.00393 * 2 1 3 25 25 H 1.08992 * 109.47407 * 120.00315 * 2 1 3 26 26 H 1.09000 * 109.46725 * 60.00060 * 3 2 1 27 27 H 1.09000 * 109.46920 * 300.00282 * 3 2 1 28 28 H 0.97000 * 120.00491 * 180.02562 * 8 7 5 29 29 H 1.08007 * 127.01862 * 0.02562 * 16 15 13 30 30 H 1.08003 * 125.42361 * 179.86891 * 17 16 15 31 31 H 1.08999 * 109.47141 * 0.02762 * 20 19 18 32 32 H 1.08998 * 109.47352 * 120.02316 * 20 19 18 33 33 H 1.08994 * 109.47375 * 240.02627 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1903 1.5355 -1.1817 6 1 5.2516 1.7352 -1.1763 7 6 3.5198 1.3729 -2.3881 8 7 2.3304 0.8147 -2.4088 9 14 4.3094 1.9480 -3.9804 10 1 5.5932 1.2299 -4.1838 11 1 3.3973 1.6618 -5.1168 12 1 4.5657 3.4088 -3.9064 13 6 4.1784 1.3511 1.1644 14 8 5.3918 1.4367 1.1734 15 6 3.4451 1.1474 2.4255 16 6 1.9977 0.9480 2.5900 17 6 1.7918 0.8101 3.9086 18 8 2.9678 0.8978 4.5494 19 6 3.9680 1.0988 3.6855 20 6 5.4246 1.2471 4.0421 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.8626 0.7008 -3.2509 29 1 1.2522 0.9205 1.8090 30 1 0.8329 0.6495 4.3790 31 1 5.5445 1.1649 5.1223 32 1 6.0005 0.4622 3.5519 33 1 5.7825 2.2216 3.7100 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044372598.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:10 Heat of formation + Delta-G solvation = -10.475317 kcal Electronic energy + Delta-G solvation = -17528.153075 eV Core-core repulsion = 14749.381868 eV Total energy + Delta-G solvation = -2778.771207 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.38863 -40.30369 -37.39365 -34.86057 -33.30849 -33.20527 -32.46507 -28.24280 -27.43935 -26.27453 -23.68753 -22.47156 -22.23365 -19.85992 -19.00321 -18.18460 -17.34229 -17.12924 -16.50943 -15.95511 -15.58678 -15.42966 -14.80522 -14.20353 -14.03903 -13.88647 -13.73421 -13.58544 -13.28120 -13.04822 -12.70986 -12.54116 -12.29531 -12.16283 -12.09432 -11.79994 -11.51305 -10.82327 -10.51022 -10.33835 -9.68440 -9.33876 -8.25540 -5.85987 0.55024 1.25820 1.41650 1.46433 1.51738 2.03467 2.28123 2.52195 3.11923 3.18655 3.79932 4.03981 4.15346 4.35621 4.44671 4.55948 4.67393 4.70438 4.73494 4.80617 4.90549 4.97314 5.12737 5.26043 5.32587 5.38761 5.46207 5.53532 5.65726 6.03163 6.05755 6.23553 6.58273 7.17601 7.48774 8.07069 8.65692 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028670 B = 0.009330 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.396590 B = 3000.435736 C = 3878.379666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.123 4.123 3 C 0.119 3.881 4 N -0.442 5.442 5 C -0.347 4.347 6 H 0.072 0.928 7 C 0.002 3.998 8 N -0.865 5.865 9 Si 0.988 3.012 10 H -0.279 1.279 11 H -0.266 1.266 12 H -0.274 1.274 13 C 0.488 3.512 14 O -0.638 6.638 15 C -0.244 4.244 16 C -0.232 4.232 17 C -0.033 4.033 18 O -0.178 6.178 19 C 0.035 3.965 20 C -0.057 4.057 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.274 0.726 29 H 0.188 0.812 30 H 0.255 0.745 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.846 -0.494 8.586 10.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.161 4.161 3 C -0.003 4.003 4 N -0.157 5.157 5 C -0.474 4.474 6 H 0.090 0.910 7 C -0.201 4.201 8 N -0.503 5.503 9 Si 0.812 3.188 10 H -0.205 1.205 11 H -0.190 1.190 12 H -0.199 1.199 13 C 0.279 3.721 14 O -0.528 6.528 15 C -0.249 4.249 16 C -0.250 4.250 17 C -0.098 4.098 18 O -0.075 6.075 19 C -0.018 4.018 20 C -0.113 4.113 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.205 0.795 30 H 0.271 0.729 31 H 0.123 0.877 32 H 0.095 0.905 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.425 -0.523 8.686 10.817 hybrid contribution 0.491 0.177 -1.354 1.451 sum -5.934 -0.346 7.332 9.438 Atomic orbital electron populations 1.21572 0.93942 1.01704 1.01555 1.21937 0.96667 0.96579 1.00962 1.22061 0.78916 0.98328 1.01000 1.43806 1.06879 1.60450 1.04596 1.19636 0.94690 1.49294 0.83815 0.90969 1.25947 0.97105 0.95620 1.01436 1.70180 1.14143 1.38068 1.27929 0.85090 0.78013 0.78657 0.77061 1.20458 1.19018 1.19950 1.17631 0.86494 0.83972 0.83958 1.90512 1.15213 1.59452 1.87661 1.21483 0.95513 1.14163 0.93722 1.24233 0.94786 1.07221 0.98788 1.24726 0.88782 1.04943 0.91348 1.83702 1.15460 1.70638 1.37696 1.22916 0.91656 1.00534 0.86681 1.20275 0.83998 1.03590 1.03438 0.92190 0.91710 0.93103 0.91106 0.94565 0.91490 0.90080 0.91600 0.79507 0.72905 0.87744 0.90499 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.71 71.98 0.70 -3.33 16 2 C -0.12 -5.09 4.64 30.60 0.14 -4.95 16 3 C 0.12 5.47 4.08 86.38 0.35 5.82 16 4 N -0.44 -24.21 2.63 -639.37 -1.68 -25.89 16 5 C -0.35 -20.26 9.46 84.07 0.80 -19.47 16 6 H 0.07 4.54 7.26 -2.91 -0.02 4.52 16 7 C 0.00 0.09 5.06 84.94 0.43 0.52 16 8 N -0.87 -43.53 8.05 21.67 0.17 -43.36 16 9 Si 0.99 42.43 29.59 68.60 2.03 44.46 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 C 0.49 26.63 7.59 86.63 0.66 27.29 16 14 O -0.64 -38.35 15.28 -4.20 -0.06 -38.42 16 15 C -0.24 -10.77 6.01 -18.99 -0.11 -10.88 16 16 C -0.23 -8.09 7.33 23.65 0.17 -7.92 16 17 C -0.03 -0.89 12.03 66.89 0.80 -0.08 16 18 O -0.18 -5.57 10.52 4.26 0.04 -5.53 16 19 C 0.04 1.32 7.38 25.28 0.19 1.51 16 20 C -0.06 -1.85 9.15 71.23 0.65 -1.20 16 21 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.06 1.64 7.02 -2.39 -0.02 1.62 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.07 3.46 6.07 -2.39 -0.01 3.45 16 25 H 0.04 1.51 6.06 -2.39 -0.01 1.49 16 26 H 0.07 2.78 4.79 -2.39 -0.01 2.76 16 27 H 0.08 3.98 5.97 -2.39 -0.01 3.96 16 28 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 29 H 0.19 6.22 2.31 -2.91 -0.01 6.21 16 30 H 0.26 3.71 8.06 -2.91 -0.02 3.69 16 31 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.08 2.70 8.04 -2.39 -0.02 2.68 16 33 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 Total: -1.00 -69.32 266.27 6.41 -62.91 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 1.13 Total: 18.52 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 4.78 Total: -12.69 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -1.51 Total: -69.25 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -0.02 Total: -43.94 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -69.32 6.41 -62.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372598.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.431 kcal (2) G-P(sol) polarization free energy of solvation -69.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds