Wall clock time and date at job start Sun Mar 29 2020 22:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46983 * 2 1 4 4 N 1.46499 * 109.47052 * 184.85289 * 3 2 1 5 5 C 1.36858 * 119.99654 * 96.16094 * 4 3 2 6 6 H 1.07999 * 119.99899 * 222.17168 * 5 4 3 7 7 C 1.39021 * 120.00197 * 41.89786 * 5 4 3 8 8 N 1.31383 * 120.00172 * 210.74833 * 7 5 4 9 9 Si 1.86802 * 119.99986 * 30.74669 * 7 5 4 10 10 H 1.48507 * 109.47177 * 86.00468 * 9 7 5 11 11 H 1.48502 * 109.47098 * 206.00796 * 9 7 5 12 12 H 1.48503 * 109.47346 * 326.00793 * 9 7 5 13 13 C 1.34774 * 120.00475 * 276.15831 * 4 3 2 14 14 O 1.21738 * 119.99742 * 355.31952 * 13 4 3 15 15 C 1.46520 * 120.00269 * 175.31488 * 13 4 3 16 16 C 1.36660 * 125.99256 * 184.12545 * 15 13 4 17 17 C 1.40337 * 106.70167 * 180.02562 * 16 15 13 18 18 C 1.35161 * 107.12440 * 0.02562 * 17 16 15 19 19 C 1.50703 * 125.61024 * 180.02562 * 18 17 16 20 20 O 1.33960 * 108.78032 * 359.73100 * 18 17 16 21 21 H 1.09007 * 109.46816 * 304.83436 * 1 2 3 22 22 H 1.08993 * 109.47168 * 64.83558 * 1 2 3 23 23 H 1.08997 * 109.46840 * 184.83836 * 1 2 3 24 24 H 1.08993 * 109.47325 * 240.00187 * 2 1 3 25 25 H 1.08999 * 109.47546 * 119.99746 * 2 1 3 26 26 H 1.08999 * 109.47143 * 64.85775 * 3 2 1 27 27 H 1.08997 * 109.47462 * 304.85157 * 3 2 1 28 28 H 0.97000 * 119.99911 * 179.97438 * 8 7 5 29 29 H 1.08005 * 126.65310 * 0.02562 * 16 15 13 30 30 H 1.08001 * 126.43374 * 180.02562 * 17 16 15 31 31 H 1.08998 * 109.47228 * 89.99209 * 19 18 17 32 32 H 1.08993 * 109.47154 * 209.99878 * 19 18 17 33 33 H 1.09003 * 109.46762 * 329.99631 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5003 1.4442 -0.1168 5 6 4.0885 1.6053 -1.3420 6 1 4.9404 1.0006 -1.6158 7 6 3.5859 2.5435 -2.2364 8 7 3.6829 2.3357 -3.5301 9 14 2.7727 4.0997 -1.5988 10 1 3.8092 5.1337 -1.3500 11 1 1.8050 4.6014 -2.6074 12 1 2.0574 3.8012 -0.3321 13 6 4.2646 1.2871 0.9821 14 8 3.7450 1.2292 2.0815 15 6 5.7206 1.1858 0.8536 16 6 6.6019 0.9468 1.8703 17 6 7.8833 0.9327 1.2984 18 6 7.7310 1.1612 -0.0250 19 6 8.8453 1.2323 -1.0372 20 8 6.4261 1.3076 -0.2900 21 1 -0.3633 0.5871 0.8436 22 1 -0.3633 0.4369 -0.9301 23 1 -0.3633 -1.0240 0.0867 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.7495 1.9306 0.9303 27 1 1.6075 1.9808 -0.8433 28 1 3.3319 2.9902 -4.1541 29 1 6.3593 0.7977 2.9122 30 1 8.8160 0.7699 1.8181 31 1 9.0289 0.2387 -1.4458 32 1 8.5618 1.9098 -1.8426 33 1 9.7511 1.6000 -0.5550 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044372686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:06 Heat of formation + Delta-G solvation = -20.485713 kcal Electronic energy + Delta-G solvation = -17230.965021 eV Core-core repulsion = 14451.759731 eV Total energy + Delta-G solvation = -2779.205290 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.86433 -38.63974 -35.36772 -33.10445 -32.52664 -31.69120 -31.24008 -27.20900 -25.64695 -24.59053 -21.68294 -20.82003 -20.59153 -19.15138 -17.95881 -16.08997 -15.63837 -15.21579 -15.03890 -14.28835 -14.05695 -13.79365 -13.12674 -12.81057 -12.70716 -12.65038 -12.39927 -12.29681 -12.12556 -11.51719 -11.48397 -11.36863 -11.10128 -10.87778 -10.38539 -10.02224 -9.84063 -9.35606 -9.30350 -8.81999 -7.93456 -7.64110 -6.61987 -4.11142 1.91850 2.95416 3.10170 3.20199 3.28222 3.53417 4.08829 4.14693 4.34658 4.88488 5.25097 5.53807 5.57975 5.62270 5.64655 5.74374 5.78572 5.92259 6.01448 6.11335 6.33233 6.36662 6.37956 6.45027 6.47298 6.65350 6.79226 6.90674 7.05673 7.29132 7.75961 7.97695 8.30826 8.87891 9.24941 9.56476 10.47786 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.020953 B = 0.010624 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.993238 B = 2634.814219 C = 3399.762070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.115 3.885 4 N -0.442 5.442 5 C -0.353 4.353 6 H 0.115 0.885 7 C 0.082 3.918 8 N -0.836 5.836 9 Si 0.852 3.148 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.253 1.253 13 C 0.541 3.459 14 O -0.584 6.584 15 C -0.020 4.020 16 C -0.167 4.167 17 C -0.228 4.228 18 C -0.020 4.020 19 C -0.072 4.072 20 O -0.119 6.119 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.277 0.723 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 -1.663 3.147 4.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.008 4.008 4 N -0.159 5.159 5 C -0.479 4.479 6 H 0.132 0.868 7 C -0.128 4.128 8 N -0.468 5.468 9 Si 0.676 3.324 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.177 1.177 13 C 0.331 3.669 14 O -0.471 6.471 15 C -0.074 4.074 16 C -0.188 4.188 17 C -0.248 4.248 18 C -0.073 4.073 19 C -0.128 4.128 20 O -0.013 6.013 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.166 0.834 30 H 0.160 0.840 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.914 -1.570 3.120 4.549 hybrid contribution -0.171 0.880 0.212 0.921 sum 2.743 -0.690 3.332 4.371 Atomic orbital electron populations 1.21686 0.96122 1.01071 1.01452 1.21819 0.95056 0.97973 1.02505 1.21736 0.81366 0.96380 1.01320 1.43669 1.04311 1.61329 1.06623 1.19195 1.17344 1.22124 0.89251 0.86790 1.25344 0.95416 0.97580 0.94465 1.69888 1.41120 1.34022 1.01802 0.87354 0.79959 0.84689 0.80351 1.19889 1.20620 1.17707 1.17005 0.82934 0.82523 0.84407 1.90711 1.72239 1.58037 1.26113 1.22216 0.93091 1.08346 0.83715 1.21707 0.91556 1.05711 0.99821 1.21351 0.98380 1.11331 0.93703 1.22812 0.84626 1.04089 0.95797 1.20251 0.92638 1.03295 0.96647 1.84636 1.15959 1.67574 1.33111 0.93031 0.92847 0.93037 0.91209 0.92088 0.91547 0.91009 0.91301 0.83423 0.84014 0.90422 0.90379 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 37.16 0.37 -1.91 16 2 C -0.14 -2.64 6.21 -26.73 -0.17 -2.80 16 3 C 0.11 2.57 3.52 -4.04 -0.01 2.56 16 4 N -0.44 -11.06 2.06 -116.36 -0.24 -11.30 16 5 C -0.35 -9.37 8.31 -15.02 -0.12 -9.49 16 6 H 0.11 3.23 6.05 -52.49 -0.32 2.91 16 7 C 0.08 2.16 5.02 -17.45 -0.09 2.07 16 8 N -0.84 -22.56 13.96 55.50 0.77 -21.78 16 9 Si 0.85 19.98 26.60 -169.99 -4.52 15.46 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.25 -5.82 5.65 56.52 0.32 -5.50 16 13 C 0.54 13.62 7.55 -12.92 -0.10 13.52 16 14 O -0.58 -15.26 16.52 5.15 0.09 -15.17 16 15 C -0.02 -0.47 6.82 -36.82 -0.25 -0.72 16 16 C -0.17 -3.34 10.63 -39.36 -0.42 -3.76 16 17 C -0.23 -3.94 10.77 -39.89 -0.43 -4.37 16 18 C -0.02 -0.36 7.31 -35.40 -0.26 -0.62 16 19 C -0.07 -0.95 10.41 36.01 0.37 -0.58 16 20 O -0.12 -2.71 7.50 4.90 0.04 -2.67 16 21 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.07 1.49 7.52 -51.93 -0.39 1.09 16 27 H 0.07 1.60 4.95 -51.93 -0.26 1.34 16 28 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.15 2.73 8.06 -52.48 -0.42 2.31 16 30 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 281.06 15.07 4.24 4.24 Total: -1.00 -29.68 281.06 -5.15 -34.82 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.41 Total: 2.52 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.10 Total: -6.10 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.53 Total: -33.09 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.12 Total: -17.85 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.52 Total: 15.46 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.68 -5.15 -34.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.337 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds