Wall clock time and date at job start Sun Mar 29 2020 22:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46983 * 2 1 4 4 N 1.46499 * 109.47052 * 184.85289 * 3 2 1 5 5 C 1.36858 * 119.99654 * 96.16094 * 4 3 2 6 6 H 1.07999 * 119.99899 * 222.17168 * 5 4 3 7 7 C 1.39021 * 120.00197 * 41.89786 * 5 4 3 8 8 N 1.31383 * 120.00172 * 210.74833 * 7 5 4 9 9 Si 1.86802 * 119.99986 * 30.74669 * 7 5 4 10 10 H 1.48507 * 109.47177 * 86.00468 * 9 7 5 11 11 H 1.48502 * 109.47098 * 206.00796 * 9 7 5 12 12 H 1.48503 * 109.47346 * 326.00793 * 9 7 5 13 13 C 1.34774 * 120.00475 * 276.15831 * 4 3 2 14 14 O 1.21738 * 119.99742 * 355.31952 * 13 4 3 15 15 C 1.46520 * 120.00269 * 175.31488 * 13 4 3 16 16 C 1.36660 * 125.99256 * 184.12545 * 15 13 4 17 17 C 1.40337 * 106.70167 * 180.02562 * 16 15 13 18 18 C 1.35161 * 107.12440 * 0.02562 * 17 16 15 19 19 C 1.50703 * 125.61024 * 180.02562 * 18 17 16 20 20 O 1.33960 * 108.78032 * 359.73100 * 18 17 16 21 21 H 1.09007 * 109.46816 * 304.83436 * 1 2 3 22 22 H 1.08993 * 109.47168 * 64.83558 * 1 2 3 23 23 H 1.08997 * 109.46840 * 184.83836 * 1 2 3 24 24 H 1.08993 * 109.47325 * 240.00187 * 2 1 3 25 25 H 1.08999 * 109.47546 * 119.99746 * 2 1 3 26 26 H 1.08999 * 109.47143 * 64.85775 * 3 2 1 27 27 H 1.08997 * 109.47462 * 304.85157 * 3 2 1 28 28 H 0.97000 * 119.99911 * 179.97438 * 8 7 5 29 29 H 1.08005 * 126.65310 * 0.02562 * 16 15 13 30 30 H 1.08001 * 126.43374 * 180.02562 * 17 16 15 31 31 H 1.08998 * 109.47228 * 89.99209 * 19 18 17 32 32 H 1.08993 * 109.47154 * 209.99878 * 19 18 17 33 33 H 1.09003 * 109.46762 * 329.99631 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5003 1.4442 -0.1168 5 6 4.0885 1.6053 -1.3420 6 1 4.9404 1.0006 -1.6158 7 6 3.5859 2.5435 -2.2364 8 7 3.6829 2.3357 -3.5301 9 14 2.7727 4.0997 -1.5988 10 1 3.8092 5.1337 -1.3500 11 1 1.8050 4.6014 -2.6074 12 1 2.0574 3.8012 -0.3321 13 6 4.2646 1.2871 0.9821 14 8 3.7450 1.2292 2.0815 15 6 5.7206 1.1858 0.8536 16 6 6.6019 0.9468 1.8703 17 6 7.8833 0.9327 1.2984 18 6 7.7310 1.1612 -0.0250 19 6 8.8453 1.2323 -1.0372 20 8 6.4261 1.3076 -0.2900 21 1 -0.3633 0.5871 0.8436 22 1 -0.3633 0.4369 -0.9301 23 1 -0.3633 -1.0240 0.0867 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.7495 1.9306 0.9303 27 1 1.6075 1.9808 -0.8433 28 1 3.3319 2.9902 -4.1541 29 1 6.3593 0.7977 2.9122 30 1 8.8160 0.7699 1.8181 31 1 9.0289 0.2387 -1.4458 32 1 8.5618 1.9098 -1.8426 33 1 9.7511 1.6000 -0.5550 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044372686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:06 Heat of formation + Delta-G solvation = -38.254591 kcal Electronic energy + Delta-G solvation = -17231.735538 eV Core-core repulsion = 14451.759731 eV Total energy + Delta-G solvation = -2779.975807 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.44243 -40.52393 -37.25374 -34.80954 -34.10350 -33.52257 -32.63384 -28.70854 -27.40755 -26.32049 -23.23760 -22.39480 -22.20274 -20.91180 -19.79762 -17.95168 -17.33662 -17.03577 -16.69214 -16.03751 -15.64050 -15.58855 -14.79496 -14.45744 -14.27517 -13.93999 -13.89034 -13.74424 -13.62291 -13.21430 -13.09555 -12.72860 -12.69646 -12.55360 -12.11689 -11.81247 -11.54531 -11.28109 -10.83257 -10.77961 -9.82233 -9.24908 -8.63336 -6.15720 0.25484 1.20230 1.30228 1.38734 1.51578 2.00213 2.15980 2.27811 2.56057 2.97670 3.85945 3.98353 4.12931 4.13585 4.18794 4.40813 4.58464 4.61818 4.65736 4.75120 4.80101 4.85615 4.94101 5.05401 5.10877 5.21364 5.23826 5.28171 5.46883 5.66458 6.02625 6.21273 6.25025 6.88248 7.28140 7.61603 8.50441 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.020953 B = 0.010624 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.993238 B = 2634.814219 C = 3399.762070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.108 3.892 4 N -0.452 5.452 5 C -0.356 4.356 6 H 0.088 0.912 7 C 0.051 3.949 8 N -0.868 5.868 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.264 1.264 12 H -0.249 1.249 13 C 0.535 3.465 14 O -0.604 6.604 15 C -0.078 4.078 16 C -0.151 4.151 17 C -0.222 4.222 18 C -0.019 4.019 19 C -0.071 4.071 20 O -0.151 6.151 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.283 0.717 29 H 0.160 0.840 30 H 0.187 0.813 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 -1.513 3.805 5.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C -0.014 4.014 4 N -0.170 5.170 5 C -0.483 4.483 6 H 0.105 0.895 7 C -0.157 4.157 8 N -0.503 5.503 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.188 1.188 12 H -0.173 1.173 13 C 0.327 3.673 14 O -0.493 6.493 15 C -0.130 4.130 16 C -0.172 4.172 17 C -0.240 4.240 18 C -0.072 4.072 19 C -0.128 4.128 20 O -0.046 6.046 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.178 0.822 30 H 0.205 0.795 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.745 -1.423 3.773 5.503 hybrid contribution -0.244 0.762 0.046 0.801 sum 3.501 -0.662 3.819 5.223 Atomic orbital electron populations 1.21654 0.92737 1.02924 1.02289 1.21742 0.97948 0.95731 1.01193 1.21889 0.80256 0.98227 1.01003 1.43774 1.05299 1.61791 1.06117 1.18963 1.17166 1.22316 0.89837 0.89475 1.25783 0.96156 0.99284 0.94442 1.69913 1.42679 1.35058 1.02605 0.86592 0.79362 0.81327 0.80385 1.20654 1.18842 1.17303 1.17344 0.84157 0.81662 0.84148 1.90661 1.73175 1.58944 1.26512 1.22074 0.92794 1.13066 0.85081 1.22082 0.92357 1.02964 0.99777 1.21793 0.98820 1.10213 0.93179 1.23915 0.83869 1.01704 0.97735 1.20529 0.92063 1.04454 0.95705 1.84575 1.18029 1.68512 1.33494 0.91965 0.92196 0.90747 0.92758 0.93076 0.91738 0.91098 0.90639 0.82243 0.79547 0.88555 0.91174 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.91 71.98 0.71 -3.39 16 2 C -0.13 -5.01 6.21 30.60 0.19 -4.82 16 3 C 0.11 4.91 3.52 86.38 0.30 5.21 16 4 N -0.45 -23.24 2.06 -640.24 -1.32 -24.57 16 5 C -0.36 -19.52 8.31 84.10 0.70 -18.82 16 6 H 0.09 5.19 6.05 -2.91 -0.02 5.17 16 7 C 0.05 2.73 5.02 84.95 0.43 3.16 16 8 N -0.87 -47.59 13.96 21.68 0.30 -47.28 16 9 Si 0.90 41.32 26.60 68.60 1.83 43.14 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.25 -11.19 5.65 99.48 0.56 -10.62 16 13 C 0.54 27.67 7.55 86.40 0.65 28.32 16 14 O -0.60 -32.16 16.52 -4.47 -0.07 -32.24 16 15 C -0.08 -3.68 6.82 24.06 0.16 -3.52 16 16 C -0.15 -5.87 10.63 22.41 0.24 -5.63 16 17 C -0.22 -7.00 10.77 22.07 0.24 -6.76 16 18 C -0.02 -0.67 7.31 24.98 0.18 -0.49 16 19 C -0.07 -1.69 10.41 71.24 0.74 -0.95 16 20 O -0.15 -6.97 7.50 -5.37 -0.04 -7.01 16 21 H 0.06 1.71 8.14 -2.38 -0.02 1.70 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.06 2.90 7.52 -2.39 -0.02 2.88 16 27 H 0.07 3.17 4.95 -2.39 -0.01 3.15 16 28 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.16 5.69 8.06 -2.91 -0.02 5.67 16 30 H 0.19 4.12 8.06 -2.91 -0.02 4.10 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -65.79 281.06 6.20 -59.59 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.96 Total: 16.05 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 4.55 Total: -7.69 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -1.02 Total: -71.85 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -0.11 Total: -39.25 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.83 Total: 43.14 kcal Total: -65.79 6.20 -59.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.337 kcal (2) G-P(sol) polarization free energy of solvation -65.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds