Wall clock time and date at job start Sun Mar 29 2020 22:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46823 * 2 1 4 4 N 1.46499 * 109.47141 * 179.97438 * 3 2 1 5 5 C 1.36848 * 120.00174 * 263.71503 * 4 3 2 6 6 H 1.08004 * 120.00050 * 195.43853 * 5 4 3 7 7 C 1.39025 * 120.00242 * 15.44134 * 5 4 3 8 8 N 1.31385 * 120.00220 * 33.07357 * 7 5 4 9 9 Si 1.86802 * 120.00085 * 213.07902 * 7 5 4 10 10 H 1.48502 * 109.47101 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47266 * 119.99497 * 9 7 5 12 12 H 1.48496 * 109.47012 * 239.99681 * 9 7 5 13 13 C 1.34777 * 119.99833 * 83.70981 * 4 3 2 14 14 O 1.21743 * 120.00382 * 183.98599 * 13 4 3 15 15 C 1.46514 * 119.99939 * 3.99320 * 13 4 3 16 16 O 1.34922 * 125.99505 * 354.44194 * 15 13 4 17 17 C 1.33967 * 109.37874 * 179.97438 * 16 15 13 18 18 C 1.35164 * 108.78023 * 359.76245 * 17 16 15 19 19 C 1.36675 * 125.99636 * 174.39842 * 15 13 4 20 20 C 1.50700 * 126.64705 * 0.02562 * 19 15 13 21 21 H 1.08995 * 109.47461 * 59.99935 * 1 2 3 22 22 H 1.08999 * 109.47312 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47439 * 299.99395 * 1 2 3 24 24 H 1.08999 * 109.46962 * 240.00027 * 2 1 3 25 25 H 1.09001 * 109.46823 * 119.99903 * 2 1 3 26 26 H 1.08999 * 109.47329 * 60.00252 * 3 2 1 27 27 H 1.09003 * 109.47420 * 300.00128 * 3 2 1 28 28 H 0.96998 * 120.00352 * 180.02562 * 8 7 5 29 29 H 1.08000 * 125.60811 * 179.97438 * 17 16 15 30 30 H 1.07998 * 126.43734 * 180.25872 * 18 17 16 31 31 H 1.08998 * 109.47177 * 89.99551 * 20 19 15 32 32 H 1.09001 * 109.46745 * 329.99334 * 20 19 15 33 33 H 1.08999 * 109.47051 * 210.00236 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1887 1.5725 1.1789 6 1 5.2395 1.8219 1.1688 7 6 3.5308 1.3835 2.3889 8 7 2.5525 0.5108 2.4755 9 14 4.0376 2.3704 3.8918 10 1 5.1567 3.2783 3.5334 11 1 2.8828 3.1722 4.3700 12 1 4.4766 1.4447 4.9668 13 6 4.1793 1.3145 -1.1593 14 8 5.3945 1.2416 -1.1521 15 6 3.4498 1.2633 -2.4289 16 8 2.1087 1.2275 -2.5720 17 6 1.8017 1.1860 -3.8754 18 6 2.9471 1.1998 -4.5929 19 6 4.0086 1.2442 -3.6761 20 6 5.4793 1.2710 -4.0034 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 2.0932 0.3791 3.3196 29 1 0.8032 1.1510 -4.2854 30 1 3.0299 1.1788 -5.6695 31 1 5.8587 0.2505 -4.0554 32 1 6.0143 1.8184 -3.2273 33 1 5.6288 1.7637 -4.9641 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044379618.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:08 Heat of formation + Delta-G solvation = -14.428478 kcal Electronic energy + Delta-G solvation = -17545.129372 eV Core-core repulsion = 14766.186743 eV Total energy + Delta-G solvation = -2778.942629 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.02971 -38.27887 -35.51595 -33.34513 -32.42753 -31.42477 -29.73634 -27.16704 -25.80186 -24.55516 -21.85660 -20.75744 -20.66490 -18.75914 -17.20168 -16.51628 -15.71687 -15.54742 -14.76514 -14.21692 -13.70464 -13.44005 -13.30068 -12.79031 -12.55548 -12.45537 -12.23503 -11.94872 -11.90188 -11.32474 -11.12982 -11.02223 -10.88807 -10.43286 -10.39361 -10.25335 -9.54763 -9.10616 -9.01201 -8.57137 -7.95986 -7.77048 -6.51193 -3.85033 1.87205 2.90013 3.11440 3.20956 3.28760 3.53009 4.05413 4.20739 4.79545 4.99351 5.27985 5.36275 5.61681 5.90799 5.95490 6.03803 6.15692 6.24658 6.26061 6.30787 6.43838 6.58458 6.71781 6.73100 6.80631 6.86011 7.05529 7.22018 7.34365 7.54806 7.83890 8.03770 8.42674 9.05882 9.28095 9.89097 10.44391 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028242 B = 0.009445 C = 0.007438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.202762 B = 2963.791781 C = 3763.560323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.125 3.875 4 N -0.414 5.414 5 C -0.315 4.315 6 H 0.109 0.891 7 C 0.043 3.957 8 N -0.834 5.834 9 Si 0.913 3.087 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.498 3.502 14 O -0.574 6.574 15 C -0.025 4.025 16 O -0.153 6.153 17 C -0.055 4.055 18 C -0.218 4.218 19 C -0.142 4.142 20 C -0.080 4.080 21 H 0.037 0.963 22 H 0.041 0.959 23 H 0.048 0.952 24 H 0.034 0.966 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.271 0.729 29 H 0.195 0.805 30 H 0.142 0.858 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.031 1.094 -7.250 8.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.002 3.998 4 N -0.128 5.128 5 C -0.442 4.442 6 H 0.126 0.874 7 C -0.165 4.165 8 N -0.470 5.470 9 Si 0.738 3.262 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.287 3.713 14 O -0.462 6.462 15 C -0.078 4.078 16 O -0.048 6.048 17 C -0.124 4.124 18 C -0.237 4.237 19 C -0.146 4.146 20 C -0.136 4.136 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.136 0.864 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.212 0.788 30 H 0.160 0.840 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.789 0.994 -6.789 8.368 hybrid contribution -0.183 0.292 0.392 0.522 sum -4.972 1.286 -6.398 8.204 Atomic orbital electron populations 1.21578 0.97442 1.00028 1.00225 1.22121 0.93898 0.97813 1.03723 1.21516 0.80302 0.97606 1.00399 1.43800 1.05629 1.57978 1.05439 1.19734 0.97153 1.45894 0.81453 0.87357 1.25298 0.96534 0.95445 0.99195 1.70023 1.23536 1.26395 1.27042 0.86104 0.79054 0.80366 0.80663 1.18892 1.20365 1.20652 1.16348 0.86523 0.87239 0.81151 1.90657 1.12038 1.58362 1.85101 1.22713 0.79607 1.08562 0.96888 1.84452 1.24079 1.70222 1.26068 1.24124 0.99879 1.06762 0.81656 1.21526 0.92049 1.10106 1.00048 1.20402 0.97181 1.05878 0.91129 1.20206 0.90179 1.02052 1.01186 0.94384 0.93995 0.93273 0.94728 0.86366 0.90458 0.92539 0.91829 0.78797 0.83982 0.91948 0.89792 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.91 37.16 0.37 -2.00 16 2 C -0.14 -2.97 5.37 -26.73 -0.14 -3.11 16 3 C 0.13 2.86 4.16 -4.04 -0.02 2.85 16 4 N -0.41 -10.80 2.63 -116.36 -0.31 -11.11 16 5 C -0.32 -8.62 9.23 -15.02 -0.14 -8.75 16 6 H 0.11 3.11 7.47 -52.48 -0.39 2.72 16 7 C 0.04 1.07 4.53 -17.45 -0.08 0.99 16 8 N -0.83 -20.80 9.13 55.50 0.51 -20.29 16 9 Si 0.91 19.60 29.66 -169.99 -5.04 14.56 16 10 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 13 C 0.50 12.98 7.54 -12.93 -0.10 12.89 16 14 O -0.57 -16.27 14.46 5.15 0.07 -16.19 16 15 C -0.02 -0.55 6.58 -36.81 -0.24 -0.80 16 16 O -0.15 -2.99 6.15 4.88 0.03 -2.96 16 17 C -0.05 -0.85 12.08 29.64 0.36 -0.49 16 18 C -0.22 -3.49 10.83 -39.89 -0.43 -3.92 16 19 C -0.14 -2.80 6.20 -104.40 -0.65 -3.44 16 20 C -0.08 -1.43 9.76 36.01 0.35 -1.07 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.03 0.77 7.14 -51.93 -0.37 0.40 16 25 H 0.12 2.89 5.54 -51.93 -0.29 2.60 16 26 H 0.08 1.83 6.61 -51.93 -0.34 1.49 16 27 H 0.06 1.22 5.35 -51.93 -0.28 0.94 16 28 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 29 H 0.20 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.14 1.81 8.06 -52.49 -0.42 1.38 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.70 6.58 -51.93 -0.34 1.36 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 273.37 15.07 4.12 4.12 Total: -1.00 -29.32 273.37 -5.44 -34.76 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.11 Total: 3.98 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.72 Total: -6.87 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.20 Total: -31.40 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.10 Total: -19.15 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.04 Total: 14.56 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.32 -5.44 -34.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044379618.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.331 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds